Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3686

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3684 and Psyr_3685 are separated by 75 nucleotidesPsyr_3685 and Psyr_3686 are separated by 14 nucleotidesPsyr_3686 and Psyr_3687 are separated by 135 nucleotides Psyr_3684: Psyr_3684 - NLP/P60, at 4,370,634 to 4,371,362 _3684 Psyr_3685: Psyr_3685 - Silent information regulator protein Sir2, at 4,371,438 to 4,372,181 _3685 Psyr_3686: Psyr_3686 - regulatory inactivation of DnaA Hda protein, at 4,372,196 to 4,372,981 _3686 Psyr_3687: Psyr_3687 - Protein of unknown function UPF0118, at 4,373,117 to 4,374,190 _3687 Position (kb) 4372 4373Strain fitness (log2 ratio) -2 -1 0 1 2at 4371.290 kb on + strandat 4371.290 kb on + strandat 4371.291 kb on - strandat 4371.382 kb on + strandat 4371.386 kb on + strandat 4371.386 kb on + strandat 4371.386 kb on + strandat 4371.386 kb on + strandat 4371.400 kb on + strandat 4371.401 kb on - strandat 4371.410 kb on - strandat 4371.450 kb on + strandat 4371.719 kb on + strand, within Psyr_3685at 4371.720 kb on - strand, within Psyr_3685at 4371.733 kb on - strand, within Psyr_3685at 4371.733 kb on - strand, within Psyr_3685at 4371.865 kb on + strand, within Psyr_3685at 4371.931 kb on + strand, within Psyr_3685at 4371.932 kb on - strand, within Psyr_3685at 4371.985 kb on + strand, within Psyr_3685at 4371.985 kb on + strand, within Psyr_3685at 4371.985 kb on + strand, within Psyr_3685at 4371.986 kb on - strand, within Psyr_3685at 4371.986 kb on - strand, within Psyr_3685at 4371.986 kb on - strand, within Psyr_3685at 4372.072 kb on + strand, within Psyr_3685at 4372.072 kb on + strand, within Psyr_3685at 4372.073 kb on - strand, within Psyr_3685at 4372.073 kb on - strand, within Psyr_3685at 4372.073 kb on - strand, within Psyr_3685at 4372.094 kb on - strand, within Psyr_3685at 4372.197 kb on + strandat 4372.197 kb on + strandat 4372.958 kb on - strandat 4373.118 kb on + strandat 4373.119 kb on - strandat 4373.145 kb on + strandat 4373.145 kb on + strandat 4373.146 kb on - strandat 4373.163 kb on + strandat 4373.163 kb on + strandat 4373.164 kb on - strandat 4373.164 kb on - strandat 4373.164 kb on - strandat 4373.164 kb on - strandat 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.449 kb on + strand, within Psyr_3687at 4373.450 kb on - strand, within Psyr_3687at 4373.450 kb on - strand, within Psyr_3687at 4373.450 kb on - strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.451 kb on + strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.452 kb on - strand, within Psyr_3687at 4373.532 kb on + strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.533 kb on - strand, within Psyr_3687at 4373.691 kb on + strand, within Psyr_3687at 4373.758 kb on + strand, within Psyr_3687at 4373.803 kb on + strand, within Psyr_3687at 4373.804 kb on - strand, within Psyr_3687

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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4,371,290 + +0.0
4,371,290 + -0.9
4,371,291 - +1.3
4,371,382 + +0.7
4,371,386 + -1.3
4,371,386 + +0.7
4,371,386 + -0.3
4,371,386 + +1.9
4,371,400 + +0.2
4,371,401 - -0.3
4,371,410 - +0.4
4,371,450 + +0.7
4,371,719 + Psyr_3685 0.38 +1.2
4,371,720 - Psyr_3685 0.38 -0.3
4,371,733 - Psyr_3685 0.40 -0.6
4,371,733 - Psyr_3685 0.40 -0.3
4,371,865 + Psyr_3685 0.57 +0.6
4,371,931 + Psyr_3685 0.66 -2.3
4,371,932 - Psyr_3685 0.66 -0.2
4,371,985 + Psyr_3685 0.74 +0.7
4,371,985 + Psyr_3685 0.74 -0.3
4,371,985 + Psyr_3685 0.74 -0.7
4,371,986 - Psyr_3685 0.74 -0.2
4,371,986 - Psyr_3685 0.74 +0.4
4,371,986 - Psyr_3685 0.74 +0.5
4,372,072 + Psyr_3685 0.85 +0.6
4,372,072 + Psyr_3685 0.85 -0.2
4,372,073 - Psyr_3685 0.85 +1.0
4,372,073 - Psyr_3685 0.85 +0.0
4,372,073 - Psyr_3685 0.85 -0.3
4,372,094 - Psyr_3685 0.88 +0.9
4,372,197 + -2.4
4,372,197 + -2.2
4,372,958 - +0.3
4,373,118 + +1.1
4,373,119 - +0.2
4,373,145 + -0.2
4,373,145 + -1.5
4,373,146 - -1.5
4,373,163 + -0.8
4,373,163 + +0.1
4,373,164 - +0.2
4,373,164 - +0.7
4,373,164 - +0.7
4,373,164 - +0.9
4,373,449 + Psyr_3687 0.31 +0.4
4,373,449 + Psyr_3687 0.31 -0.4
4,373,449 + Psyr_3687 0.31 -0.4
4,373,449 + Psyr_3687 0.31 +0.4
4,373,449 + Psyr_3687 0.31 +0.1
4,373,449 + Psyr_3687 0.31 -0.5
4,373,450 - Psyr_3687 0.31 +1.3
4,373,450 - Psyr_3687 0.31 -0.1
4,373,450 - Psyr_3687 0.31 +0.7
4,373,451 + Psyr_3687 0.31 -0.1
4,373,451 + Psyr_3687 0.31 -0.2
4,373,451 + Psyr_3687 0.31 +0.7
4,373,451 + Psyr_3687 0.31 +2.3
4,373,451 + Psyr_3687 0.31 +0.5
4,373,451 + Psyr_3687 0.31 -0.4
4,373,451 + Psyr_3687 0.31 +0.3
4,373,452 - Psyr_3687 0.31 +0.7
4,373,452 - Psyr_3687 0.31 -0.9
4,373,452 - Psyr_3687 0.31 +1.0
4,373,452 - Psyr_3687 0.31 -1.1
4,373,452 - Psyr_3687 0.31 +1.6
4,373,452 - Psyr_3687 0.31 +0.4
4,373,452 - Psyr_3687 0.31 -0.1
4,373,452 - Psyr_3687 0.31 +0.7
4,373,452 - Psyr_3687 0.31 -0.9
4,373,452 - Psyr_3687 0.31 -1.1
4,373,452 - Psyr_3687 0.31 -0.1
4,373,452 - Psyr_3687 0.31 +1.7
4,373,452 - Psyr_3687 0.31 +0.1
4,373,532 + Psyr_3687 0.39 -0.9
4,373,533 - Psyr_3687 0.39 +1.0
4,373,533 - Psyr_3687 0.39 +1.7
4,373,533 - Psyr_3687 0.39 +0.7
4,373,533 - Psyr_3687 0.39 -0.4
4,373,533 - Psyr_3687 0.39 -0.7
4,373,691 + Psyr_3687 0.53 +0.2
4,373,758 + Psyr_3687 0.60 +0.7
4,373,803 + Psyr_3687 0.64 -0.6
4,373,804 - Psyr_3687 0.64 -0.6

Or see this region's nucleotide sequence