Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3333

Experiment: KB with Nitrofurantoin 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 125 ug/ml
3,987,320	-				-0.9
3,987,377	-		Psyr_3332	0.13	+2.6
3,987,377	-		Psyr_3332	0.13	-1.6
3,987,411	+		Psyr_3332	0.16	-0.2
3,987,411	+		Psyr_3332	0.16	+0.5
3,987,411	+		Psyr_3332	0.16	+0.1
3,987,411	+		Psyr_3332	0.16	+0.9
3,987,412	-		Psyr_3332	0.16	-0.5
3,987,412	-		Psyr_3332	0.16	-0.3
3,987,412	-		Psyr_3332	0.16	+0.2
3,987,412	-		Psyr_3332	0.16	-0.3
3,987,412	-		Psyr_3332	0.16	+0.7
3,987,412	-		Psyr_3332	0.16	-1.4
3,987,682	-		Psyr_3332	0.41	-2.4
3,987,877	+		Psyr_3332	0.60	+1.6
3,987,877	+		Psyr_3332	0.60	+0.3
3,987,877	+		Psyr_3332	0.60	+0.3
3,987,878	-		Psyr_3332	0.60	-1.0
3,987,878	-		Psyr_3332	0.60	+0.5
3,987,878	-		Psyr_3332	0.60	-0.1
3,987,878	-		Psyr_3332	0.60	+0.2
3,987,878	-		Psyr_3332	0.60	+0.1
3,987,878	-		Psyr_3332	0.60	-0.3
3,987,878	-		Psyr_3332	0.60	+0.5
3,987,878	-		Psyr_3332	0.60	-1.5
3,987,878	-		Psyr_3332	0.60	+0.4
3,987,880	+		Psyr_3332	0.60	+0.6
3,987,881	-		Psyr_3332	0.60	-0.9
3,987,881	-		Psyr_3332	0.60	-1.4
3,987,881	-		Psyr_3332	0.60	-0.2
3,988,030	+		Psyr_3332	0.74	-0.7
3,988,031	-		Psyr_3332	0.74	+0.9
3,988,031	-		Psyr_3332	0.74	-0.5
3,988,131	-		Psyr_3332	0.84	+0.4
3,988,131	-		Psyr_3332	0.84	+0.0
3,988,170	+		Psyr_3332	0.88	-0.5
3,988,288	-				-0.4
3,988,318	+				-0.1
3,988,318	+				-0.8
3,988,318	+				-0.4
3,988,318	+				+1.4
3,988,318	+				+0.2
3,988,318	+				+0.0
3,988,318	+				-0.1
3,988,319	-				+0.0
3,988,319	-				+0.8
3,988,319	-				-1.0
3,988,319	-				+3.6
3,988,319	-				-0.7
3,988,319	-				-1.7
3,988,319	-				-0.6
3,988,319	-				+0.3
3,988,364	+				-0.1
3,988,364	+				+0.6
3,988,364	+				-1.0
3,988,364	+				+0.8
3,988,364	+				+0.2
3,988,365	-				-1.1
3,988,416	+				+2.3
3,988,417	-				-0.7
3,988,461	+		Psyr_3333	0.13	+0.6
3,988,461	+		Psyr_3333	0.13	+0.2
3,988,462	-		Psyr_3333	0.13	-0.4
3,988,462	-		Psyr_3333	0.13	-0.2
3,988,462	-		Psyr_3333	0.13	+1.8
3,988,462	-		Psyr_3333	0.13	+0.1
3,988,480	+		Psyr_3333	0.14	+0.2
3,988,480	+		Psyr_3333	0.14	+0.1
3,988,480	+		Psyr_3333	0.14	-0.2
3,988,481	-		Psyr_3333	0.14	-1.0
3,988,481	-		Psyr_3333	0.14	-0.2
3,988,576	-		Psyr_3333	0.22	+0.0
3,988,768	+		Psyr_3333	0.38	-0.2
3,988,944	+		Psyr_3333	0.52	-1.4
3,989,107	-		Psyr_3333	0.65	-2.7
3,989,229	-		Psyr_3333	0.75	+0.4
3,989,229	-		Psyr_3333	0.75	-1.0
3,989,229	-		Psyr_3333	0.75	+0.4
3,989,284	+		Psyr_3333	0.79	-1.2
3,989,320	+		Psyr_3333	0.82	-0.3
3,989,320	+		Psyr_3333	0.82	-0.3
3,989,320	+		Psyr_3333	0.82	-2.2
3,989,320	+		Psyr_3333	0.82	+0.1
3,989,320	+		Psyr_3333	0.82	-0.7
3,989,320	+		Psyr_3333	0.82	+0.3
3,989,321	-		Psyr_3333	0.82	-1.4
3,989,321	-		Psyr_3333	0.82	-0.1
3,989,321	-		Psyr_3333	0.82	+0.1
3,989,321	-		Psyr_3333	0.82	-0.1
3,989,321	-		Psyr_3333	0.82	-0.4
3,989,321	-		Psyr_3333	0.82	-1.5
3,989,321	-		Psyr_3333	0.82	+1.1
3,989,321	-		Psyr_3333	0.82	+1.2
3,989,321	-		Psyr_3333	0.82	-0.6
3,989,321	-		Psyr_3333	0.82	-0.7
3,989,343	+		Psyr_3333	0.84	+0.0
3,989,343	+		Psyr_3333	0.84	-1.2
3,989,343	+		Psyr_3333	0.84	+0.1
3,989,343	+		Psyr_3333	0.84	+0.4
3,989,343	+		Psyr_3333	0.84	+0.6
3,989,343	+		Psyr_3333	0.84	+0.6
3,989,343	+		Psyr_3333	0.84	+0.6
3,989,344	-		Psyr_3333	0.84	-1.7
3,989,344	-		Psyr_3333	0.84	+1.8
3,989,344	-		Psyr_3333	0.84	-0.6
3,989,344	-		Psyr_3333	0.84	+1.0
3,989,344	-		Psyr_3333	0.84	+0.0
3,989,344	-		Psyr_3333	0.84	-0.7
3,989,542	+				-0.1
3,989,549	+				+0.6
3,989,737	+		Psyr_3334	0.40	+1.1
3,990,039	-				+2.2
3,990,074	+				-0.1
3,990,074	+				+0.3
3,990,074	+				-0.6
3,990,074	+				+0.6
3,990,074	+				+0.8
3,990,075	-				-1.6
3,990,075	-				-1.1
3,990,075	-				-0.4
3,990,075	-				-0.7
3,990,078	+				+0.6
3,990,078	+				+0.3
3,990,078	+				-0.5
3,990,078	+				+0.6
3,990,079	-				+0.1
3,990,079	-				+1.6
3,990,079	-				-1.5
3,990,079	-				-0.4
3,990,080	+				+0.6
3,990,080	+				-1.2
3,990,080	+				-0.8
3,990,080	+				+0.5
3,990,080	+				+1.2
3,990,080	+				+0.5
3,990,080	+				+1.0
3,990,080	+				-1.1
3,990,080	+				+1.8
3,990,080	+				-0.1
3,990,080	+				-0.1
3,990,080	+				+1.0
3,990,080	+				-0.1
3,990,080	+				-0.7
3,990,080	+				+1.2
3,990,080	+				-0.4
3,990,080	+				+1.2
3,990,080	+				+0.7
3,990,080	+				+1.2
3,990,080	+				+0.3
3,990,080	+				+1.0
3,990,080	+				+0.8
3,990,080	+				-0.4
3,990,080	+				+0.0
3,990,080	+				+0.0
3,990,080	+				-0.9
3,990,080	+				-1.8
3,990,080	+				+0.9
3,990,081	-				-1.1
3,990,081	-				-0.9
3,990,081	-				-1.4
3,990,081	-				-0.8
3,990,081	-				+2.6
3,990,081	-				+0.6
3,990,081	-				-0.0
3,990,081	-				+0.9
3,990,081	-				+0.1
3,990,081	-				+0.6
3,990,081	-				+0.7
3,990,081	-				+0.3
3,990,081	-				+0.4
3,990,081	-				-0.6
3,990,081	-				+0.9
3,990,081	-				+0.4
3,990,081	-				-1.3
3,990,081	-				-0.5
3,990,081	-				-0.8
3,990,081	-				-1.2
3,990,081	-				-0.6
3,990,081	-				+0.0
3,990,081	-				+0.2
3,990,081	-				+1.2
3,990,081	-				-0.5
3,990,081	-				-1.0
3,990,112	+				-0.1
3,990,112	+				+1.1
3,990,112	+				-0.5
3,990,112	+				+0.6
3,990,112	+				+2.2
3,990,112	+				+0.1
3,990,112	+				+1.2
3,990,125	+				-0.1
3,990,176	+		Psyr_3335	0.15	-1.0
3,990,176	+		Psyr_3335	0.15	-0.6
3,990,177	-		Psyr_3335	0.15	-1.4
3,990,177	-		Psyr_3335	0.15	+0.2
3,990,180	+		Psyr_3335	0.16	-1.1
3,990,181	-		Psyr_3335	0.16	-1.0
3,990,181	-		Psyr_3335	0.16	-0.2
3,990,186	+		Psyr_3335	0.16	+0.7
3,990,186	+		Psyr_3335	0.16	+0.6
3,990,186	+		Psyr_3335	0.16	+0.2
3,990,187	-		Psyr_3335	0.16	+0.3
3,990,187	-		Psyr_3335	0.16	-0.1
3,990,188	+		Psyr_3335	0.16	-1.5
3,990,188	+		Psyr_3335	0.16	+2.2
3,990,188	+		Psyr_3335	0.16	-1.5
3,990,188	+		Psyr_3335	0.16	+1.4
3,990,188	+		Psyr_3335	0.16	-0.4
3,990,188	+		Psyr_3335	0.16	+1.0
3,990,188	+		Psyr_3335	0.16	-1.9
3,990,189	-		Psyr_3335	0.17	-0.4
3,990,189	-		Psyr_3335	0.17	+0.4
3,990,189	-		Psyr_3335	0.17	+0.6
3,990,189	-		Psyr_3335	0.17	+2.2
3,990,189	-		Psyr_3335	0.17	+1.0
3,990,189	-		Psyr_3335	0.17	+0.2
3,990,189	-		Psyr_3335	0.17	-1.7
3,990,189	-		Psyr_3335	0.17	-0.9
3,990,189	-		Psyr_3335	0.17	-0.3
3,990,197	+		Psyr_3335	0.17	+1.0
3,990,203	+		Psyr_3335	0.18	-0.1
3,990,203	+		Psyr_3335	0.18	+0.4
3,990,204	-		Psyr_3335	0.18	+1.4
3,990,204	-		Psyr_3335	0.18	-0.1
3,990,204	-		Psyr_3335	0.18	-3.6
3,990,204	-		Psyr_3335	0.18	-0.3
3,990,302	+		Psyr_3335	0.28	-1.4
3,990,302	+		Psyr_3335	0.28	-0.4
3,990,302	+		Psyr_3335	0.28	+0.8
3,990,303	-		Psyr_3335	0.28	+0.0
3,990,303	-		Psyr_3335	0.28	+1.6
3,990,303	-		Psyr_3335	0.28	-0.1
3,990,303	-		Psyr_3335	0.28	+1.0
3,990,326	+		Psyr_3335	0.31	+0.3
3,990,326	+		Psyr_3335	0.31	-1.0
3,990,326	+		Psyr_3335	0.31	-1.1
3,990,326	+		Psyr_3335	0.31	+0.3
3,990,326	+		Psyr_3335	0.31	+0.6
3,990,326	+		Psyr_3335	0.31	-0.9
3,990,327	-		Psyr_3335	0.31	+1.2
3,990,327	-		Psyr_3335	0.31	+0.1
3,990,327	-		Psyr_3335	0.31	-1.0
3,990,327	-		Psyr_3335	0.31	-0.4
3,990,327	-		Psyr_3335	0.31	+2.2
3,990,327	-		Psyr_3335	0.31	+0.6
3,990,399	-		Psyr_3335	0.38	-0.3