Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3060

Experiment: KB with Nitrofurantoin 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 125 ug/ml
3,658,414	+		Psyr_3059	0.68	+0.3
3,658,415	-		Psyr_3059	0.68	-0.4
3,658,480	+		Psyr_3059	0.72	+0.4
3,658,481	-				+0.6
3,658,481	-		Psyr_3059	0.72	+1.2
3,658,632	-		Psyr_3059	0.82	-1.2
3,658,762	+		Psyr_3059	0.90	-0.1
3,658,762	+		Psyr_3059	0.90	+1.8
3,658,763	-		Psyr_3059	0.90	+0.2
3,658,763	-		Psyr_3059	0.90	-0.7
3,658,763	-		Psyr_3059	0.90	+0.9
3,658,801	+				+1.2
3,658,802	-				+1.4
3,658,802	-				-0.0
3,658,945	+				-0.8
3,658,955	-				+0.5
3,659,032	-				-1.2
3,659,131	+				-1.4
3,659,148	-				+0.9
3,659,149	+				-1.4
3,659,149	+				+0.1
3,659,175	+				+0.6
3,659,299	+				+0.1
3,659,300	-				-0.5
3,659,300	-				+0.8
3,659,300	-				+1.0
3,659,308	+				-0.3
3,659,308	+				-0.7
3,659,309	-				+0.3
3,659,309	-				-0.2
3,659,309	-				+0.8
3,659,326	-				+0.3
3,659,334	+				-0.4
3,659,335	-				+0.0
3,659,344	-				-1.4
3,659,344	-				+1.9
3,659,344	-				+2.4
3,659,344	-				+0.5
3,659,344	-				+1.4
3,659,350	+				-1.4
3,659,350	+				+0.3
3,659,350	+				+0.3
3,659,351	-				-0.1
3,659,351	-				-1.2
3,659,351	-				+1.6
3,659,351	-				-1.2
3,659,446	+				+0.8
3,659,709	+		Psyr_3060	0.25	+0.6
3,659,709	+		Psyr_3060	0.25	-0.2
3,659,710	-		Psyr_3060	0.25	-0.2
3,659,710	-		Psyr_3060	0.25	-0.2
3,659,710	-		Psyr_3060	0.25	-0.1
3,659,710	-		Psyr_3060	0.25	-0.3
3,659,710	-				+0.6
3,659,710	-		Psyr_3060	0.25	-0.4
3,659,721	+		Psyr_3060	0.26	-0.7
3,659,742	-		Psyr_3060	0.28	-0.4
3,659,784	-		Psyr_3060	0.31	+0.6
3,660,386	+		Psyr_3060	0.76	-0.8
3,660,386	+		Psyr_3060	0.76	-1.0
3,660,386	+		Psyr_3060	0.76	-1.4
3,660,387	-		Psyr_3060	0.76	-1.2
3,660,387	-		Psyr_3060	0.76	-0.1
3,660,449	-		Psyr_3060	0.81	-1.8
3,660,580	+				-0.8
3,660,642	+				+0.6
3,660,653	-				-0.0
3,660,674	+				+0.7
3,660,689	+				-0.6
3,660,692	-				-0.3
3,660,733	+				+1.1
3,660,853	+				-2.1
3,660,853	+				-0.6
3,660,890	-		Psyr_3061	0.12	-0.3
3,661,457	+				-0.6
3,661,457	+				+1.2
3,661,457	+				-0.2
3,661,457	+				+0.6
3,661,458	-				+1.2
3,661,458	-				-1.4
3,661,458	-				-1.3
3,661,458	-				-1.6
3,661,458	-				-1.2
3,661,458	-				-0.2
3,661,458	-				+0.3
3,661,458	-				-0.0
3,661,458	-				+0.9
3,661,458	-				+1.3
3,661,458	-				-0.8
3,661,461	+				-0.0
3,661,461	+				-0.0
3,661,462	-				-0.1
3,661,462	-				+0.6
3,661,508	-				-2.1
3,661,622	+		Psyr_3062	0.13	-0.2
3,661,623	-		Psyr_3062	0.13	-2.4
3,661,623	-		Psyr_3062	0.13	-0.5