Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2995

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2994 and Psyr_2995 overlap by 4 nucleotidesPsyr_2995 and Psyr_2996 are separated by 17 nucleotidesPsyr_2996 and Psyr_2997 are separated by 156 nucleotides Psyr_2994: Psyr_2994 - Glycoside hydrolase, family 77, at 3,587,087 to 3,589,165 _2994 Psyr_2995: Psyr_2995 - maltooligosyl trehalose synthase, at 3,589,162 to 3,591,945 _2995 Psyr_2996: Psyr_2996 - conserved hypothetical protein, at 3,591,963 to 3,592,364 _2996 Psyr_2997: Psyr_2997 - Glycoside hydrolase, family 13, N-terminal:Alpha amylase, catalytic region, at 3,592,521 to 3,594,704 _2997 Position (kb) 3589 3590 3591 3592Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3588.509 kb on + strand, within Psyr_2994at 3588.510 kb on - strand, within Psyr_2994at 3588.855 kb on - strand, within Psyr_2994at 3588.947 kb on + strand, within Psyr_2994at 3588.948 kb on - strand, within Psyr_2994at 3588.958 kb on + strandat 3588.958 kb on + strandat 3588.959 kb on - strandat 3588.959 kb on - strandat 3588.975 kb on + strandat 3589.122 kb on + strandat 3589.123 kb on - strandat 3589.123 kb on - strandat 3589.123 kb on - strandat 3589.176 kb on - strandat 3589.176 kb on - strandat 3589.252 kb on + strandat 3589.516 kb on + strand, within Psyr_2995at 3589.562 kb on + strand, within Psyr_2995at 3589.562 kb on + strand, within Psyr_2995at 3589.563 kb on - strand, within Psyr_2995at 3589.600 kb on + strand, within Psyr_2995at 3589.663 kb on + strand, within Psyr_2995at 3589.675 kb on + strand, within Psyr_2995at 3589.708 kb on + strand, within Psyr_2995at 3589.708 kb on + strand, within Psyr_2995at 3589.709 kb on - strand, within Psyr_2995at 3589.796 kb on - strand, within Psyr_2995at 3589.796 kb on - strand, within Psyr_2995at 3589.796 kb on - strand, within Psyr_2995at 3589.796 kb on - strand, within Psyr_2995at 3590.045 kb on + strand, within Psyr_2995at 3590.045 kb on + strand, within Psyr_2995at 3590.046 kb on - strand, within Psyr_2995at 3590.046 kb on - strand, within Psyr_2995at 3590.069 kb on + strand, within Psyr_2995at 3590.297 kb on - strand, within Psyr_2995at 3590.573 kb on - strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.581 kb on + strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.582 kb on - strand, within Psyr_2995at 3590.583 kb on + strand, within Psyr_2995at 3590.584 kb on - strand, within Psyr_2995at 3590.584 kb on - strand, within Psyr_2995at 3590.620 kb on + strand, within Psyr_2995at 3590.621 kb on - strand, within Psyr_2995at 3590.621 kb on - strand, within Psyr_2995at 3590.621 kb on - strand, within Psyr_2995at 3590.686 kb on + strand, within Psyr_2995at 3590.687 kb on - strand, within Psyr_2995at 3590.687 kb on - strand, within Psyr_2995at 3590.752 kb on + strand, within Psyr_2995at 3590.753 kb on - strand, within Psyr_2995at 3590.844 kb on - strand, within Psyr_2995at 3591.044 kb on + strand, within Psyr_2995at 3591.045 kb on - strand, within Psyr_2995at 3591.121 kb on + strand, within Psyr_2995at 3591.121 kb on + strand, within Psyr_2995at 3591.122 kb on - strand, within Psyr_2995at 3591.122 kb on - strand, within Psyr_2995at 3591.181 kb on + strand, within Psyr_2995at 3591.240 kb on + strand, within Psyr_2995at 3591.240 kb on + strand, within Psyr_2995at 3591.241 kb on - strand, within Psyr_2995at 3591.433 kb on + strand, within Psyr_2995at 3591.433 kb on + strand, within Psyr_2995at 3591.433 kb on + strand, within Psyr_2995at 3591.434 kb on - strand, within Psyr_2995at 3591.434 kb on - strand, within Psyr_2995at 3591.496 kb on + strand, within Psyr_2995at 3591.497 kb on - strand, within Psyr_2995at 3591.643 kb on + strand, within Psyr_2995at 3591.729 kb on - strandat 3591.752 kb on + strandat 3591.752 kb on + strandat 3591.753 kb on - strandat 3591.887 kb on + strandat 3591.930 kb on + strandat 3591.939 kb on + strandat 3591.939 kb on + strandat 3591.939 kb on + strandat 3591.939 kb on + strandat 3591.939 kb on + strandat 3591.939 kb on + strandat 3591.939 kb on + strandat 3591.939 kb on + strandat 3591.940 kb on - strandat 3591.940 kb on - strandat 3591.940 kb on - strandat 3591.940 kb on - strandat 3591.943 kb on + strandat 3591.943 kb on + strandat 3591.943 kb on + strandat 3591.943 kb on + strandat 3591.944 kb on - strandat 3591.944 kb on - strandat 3591.944 kb on - strandat 3591.944 kb on - strandat 3591.944 kb on - strandat 3591.944 kb on - strandat 3591.946 kb on + strandat 3591.946 kb on + strandat 3591.947 kb on - strandat 3591.947 kb on - strandat 3591.947 kb on - strandat 3591.947 kb on - strandat 3592.142 kb on - strand, within Psyr_2996at 3592.393 kb on - strandat 3592.393 kb on - strandat 3592.429 kb on + strandat 3592.539 kb on - strandat 3592.539 kb on - strandat 3592.553 kb on + strandat 3592.553 kb on + strandat 3592.554 kb on - strandat 3592.685 kb on - strandat 3592.761 kb on + strand, within Psyr_2997at 3592.762 kb on - strand, within Psyr_2997at 3592.800 kb on + strand, within Psyr_2997at 3592.800 kb on + strand, within Psyr_2997at 3592.801 kb on - strand, within Psyr_2997at 3592.930 kb on - strand, within Psyr_2997

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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3,588,509 + Psyr_2994 0.68 +0.6
3,588,510 - Psyr_2994 0.68 +1.2
3,588,855 - Psyr_2994 0.85 +0.4
3,588,947 + Psyr_2994 0.89 -0.5
3,588,948 - Psyr_2994 0.90 -1.7
3,588,958 + +0.2
3,588,958 + -1.1
3,588,959 - +1.2
3,588,959 - +0.7
3,588,975 + -1.5
3,589,122 + -0.1
3,589,123 - +0.6
3,589,123 - -0.4
3,589,123 - +0.1
3,589,176 - -0.6
3,589,176 - +0.3
3,589,252 + -1.0
3,589,516 + Psyr_2995 0.13 +1.4
3,589,562 + Psyr_2995 0.14 -2.4
3,589,562 + Psyr_2995 0.14 -0.2
3,589,563 - Psyr_2995 0.14 +0.3
3,589,600 + Psyr_2995 0.16 +0.1
3,589,663 + Psyr_2995 0.18 -0.7
3,589,675 + Psyr_2995 0.18 +0.3
3,589,708 + Psyr_2995 0.20 -0.0
3,589,708 + Psyr_2995 0.20 +0.0
3,589,709 - Psyr_2995 0.20 -0.1
3,589,796 - Psyr_2995 0.23 -0.7
3,589,796 - Psyr_2995 0.23 -0.6
3,589,796 - Psyr_2995 0.23 +0.6
3,589,796 - Psyr_2995 0.23 -2.1
3,590,045 + Psyr_2995 0.32 -0.8
3,590,045 + Psyr_2995 0.32 +0.2
3,590,046 - Psyr_2995 0.32 +0.7
3,590,046 - Psyr_2995 0.32 +1.0
3,590,069 + Psyr_2995 0.33 +0.1
3,590,297 - Psyr_2995 0.41 -1.0
3,590,573 - Psyr_2995 0.51 -0.0
3,590,581 + Psyr_2995 0.51 -0.8
3,590,581 + Psyr_2995 0.51 +0.3
3,590,581 + Psyr_2995 0.51 +1.2
3,590,581 + Psyr_2995 0.51 +0.6
3,590,581 + Psyr_2995 0.51 -2.4
3,590,581 + Psyr_2995 0.51 +0.3
3,590,581 + Psyr_2995 0.51 -1.6
3,590,581 + Psyr_2995 0.51 -1.9
3,590,581 + Psyr_2995 0.51 +0.6
3,590,581 + Psyr_2995 0.51 -0.3
3,590,581 + Psyr_2995 0.51 +1.0
3,590,581 + Psyr_2995 0.51 +0.3
3,590,581 + Psyr_2995 0.51 +1.0
3,590,581 + Psyr_2995 0.51 +0.8
3,590,582 - Psyr_2995 0.51 +0.4
3,590,582 - Psyr_2995 0.51 +0.5
3,590,582 - Psyr_2995 0.51 +0.6
3,590,582 - Psyr_2995 0.51 +1.7
3,590,582 - Psyr_2995 0.51 +1.6
3,590,582 - Psyr_2995 0.51 +0.1
3,590,582 - Psyr_2995 0.51 +0.4
3,590,582 - Psyr_2995 0.51 +0.6
3,590,582 - Psyr_2995 0.51 +2.6
3,590,582 - Psyr_2995 0.51 +0.6
3,590,582 - Psyr_2995 0.51 -1.3
3,590,582 - Psyr_2995 0.51 +0.0
3,590,582 - Psyr_2995 0.51 +1.2
3,590,582 - Psyr_2995 0.51 +0.9
3,590,582 - Psyr_2995 0.51 +0.4
3,590,583 + Psyr_2995 0.51 +0.0
3,590,584 - Psyr_2995 0.51 -1.2
3,590,584 - Psyr_2995 0.51 -0.4
3,590,620 + Psyr_2995 0.52 +1.0
3,590,621 - Psyr_2995 0.52 -0.4
3,590,621 - Psyr_2995 0.52 +0.7
3,590,621 - Psyr_2995 0.52 +0.6
3,590,686 + Psyr_2995 0.55 -0.2
3,590,687 - Psyr_2995 0.55 +1.2
3,590,687 - Psyr_2995 0.55 +0.9
3,590,752 + Psyr_2995 0.57 -1.0
3,590,753 - Psyr_2995 0.57 -0.1
3,590,844 - Psyr_2995 0.60 +0.0
3,591,044 + Psyr_2995 0.68 -0.4
3,591,045 - Psyr_2995 0.68 -0.0
3,591,121 + Psyr_2995 0.70 +0.3
3,591,121 + Psyr_2995 0.70 +0.4
3,591,122 - Psyr_2995 0.70 -3.0
3,591,122 - Psyr_2995 0.70 -1.0
3,591,181 + Psyr_2995 0.73 +0.1
3,591,240 + Psyr_2995 0.75 +0.4
3,591,240 + Psyr_2995 0.75 -0.5
3,591,241 - Psyr_2995 0.75 +0.6
3,591,433 + Psyr_2995 0.82 +1.2
3,591,433 + Psyr_2995 0.82 -0.2
3,591,433 + Psyr_2995 0.82 +0.0
3,591,434 - Psyr_2995 0.82 +2.0
3,591,434 - Psyr_2995 0.82 -0.4
3,591,496 + Psyr_2995 0.84 +0.6
3,591,497 - Psyr_2995 0.84 +0.5
3,591,643 + Psyr_2995 0.89 -0.6
3,591,729 - +0.6
3,591,752 + +1.7
3,591,752 + +0.0
3,591,753 - -1.6
3,591,887 + +0.1
3,591,930 + -0.7
3,591,939 + -0.5
3,591,939 + +0.8
3,591,939 + -0.7
3,591,939 + +1.0
3,591,939 + +0.9
3,591,939 + +0.1
3,591,939 + +0.6
3,591,939 + -0.5
3,591,940 - -1.5
3,591,940 - +0.3
3,591,940 - -0.7
3,591,940 - +0.9
3,591,943 + -0.5
3,591,943 + -1.4
3,591,943 + +1.1
3,591,943 + +0.6
3,591,944 - -1.4
3,591,944 - +0.4
3,591,944 - -1.4
3,591,944 - -0.4
3,591,944 - +0.0
3,591,944 - -1.0
3,591,946 + -0.7
3,591,946 + +1.9
3,591,947 - -0.3
3,591,947 - +1.0
3,591,947 - +0.4
3,591,947 - -0.7
3,592,142 - Psyr_2996 0.45 +0.7
3,592,393 - +0.6
3,592,393 - -0.8
3,592,429 + +1.0
3,592,539 - -0.1
3,592,539 - -2.0
3,592,553 + +0.6
3,592,553 + -0.4
3,592,554 - +0.1
3,592,685 - -0.6
3,592,761 + Psyr_2997 0.11 -0.8
3,592,762 - Psyr_2997 0.11 +0.6
3,592,800 + Psyr_2997 0.13 +0.1
3,592,800 + Psyr_2997 0.13 -0.2
3,592,801 - Psyr_2997 0.13 +0.0
3,592,930 - Psyr_2997 0.19 -0.2

Or see this region's nucleotide sequence