Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2913

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2912 and Psyr_2913 are separated by 310 nucleotidesPsyr_2913 and Psyr_2914 are separated by 240 nucleotides Psyr_2912: Psyr_2912 - Zinc-containing alcohol dehydrogenase superfamily, at 3,495,306 to 3,496,328 _2912 Psyr_2913: Psyr_2913 - transcriptional regulator, LysR family, at 3,496,639 to 3,497,553 _2913 Psyr_2914: Psyr_2914 - ATP-dependent DNA helicase RecQ, at 3,497,794 to 3,502,215 _2914 Position (kb) 3496 3497 3498Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3495.704 kb on - strand, within Psyr_2912at 3495.776 kb on - strand, within Psyr_2912at 3496.404 kb on - strandat 3496.407 kb on - strandat 3496.483 kb on + strandat 3496.552 kb on + strandat 3496.586 kb on - strandat 3496.588 kb on + strandat 3496.631 kb on + strandat 3496.631 kb on + strandat 3496.631 kb on + strandat 3496.632 kb on - strandat 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.050 kb on + strand, within Psyr_2913at 3497.051 kb on - strand, within Psyr_2913at 3497.051 kb on - strand, within Psyr_2913at 3497.051 kb on - strand, within Psyr_2913at 3497.051 kb on - strand, within Psyr_2913at 3497.105 kb on - strand, within Psyr_2913at 3497.342 kb on + strand, within Psyr_2913at 3497.343 kb on - strand, within Psyr_2913at 3497.575 kb on - strandat 3497.582 kb on + strandat 3497.599 kb on - strandat 3497.616 kb on + strandat 3497.617 kb on - strandat 3497.664 kb on + strandat 3497.684 kb on - strandat 3497.684 kb on - strandat 3497.684 kb on - strandat 3497.684 kb on - strandat 3497.687 kb on + strandat 3497.688 kb on - strandat 3497.736 kb on + strandat 3497.795 kb on + strandat 3497.796 kb on - strandat 3497.796 kb on - strandat 3497.800 kb on - strandat 3497.810 kb on - strandat 3497.839 kb on + strandat 3497.839 kb on + strandat 3497.864 kb on + strandat 3497.865 kb on - strandat 3497.944 kb on + strandat 3497.979 kb on - strandat 3498.002 kb on + strandat 3498.003 kb on - strandat 3498.003 kb on - strandat 3498.006 kb on + strandat 3498.006 kb on + strandat 3498.006 kb on + strandat 3498.006 kb on + strandat 3498.006 kb on + strandat 3498.006 kb on + strandat 3498.006 kb on + strandat 3498.006 kb on + strandat 3498.006 kb on + strandat 3498.007 kb on - strandat 3498.007 kb on - strandat 3498.007 kb on - strandat 3498.058 kb on + strandat 3498.059 kb on - strandat 3498.059 kb on - strandat 3498.067 kb on + strandat 3498.067 kb on + strandat 3498.067 kb on + strandat 3498.068 kb on - strandat 3498.098 kb on + strandat 3498.098 kb on + strandat 3498.130 kb on + strandat 3498.131 kb on - strandat 3498.131 kb on - strandat 3498.131 kb on - strandat 3498.135 kb on - strandat 3498.135 kb on - strandat 3498.158 kb on + strandat 3498.159 kb on - strandat 3498.159 kb on - strandat 3498.272 kb on + strand, within Psyr_2914at 3498.272 kb on + strand, within Psyr_2914at 3498.273 kb on - strand, within Psyr_2914at 3498.273 kb on - strand, within Psyr_2914at 3498.276 kb on - strand, within Psyr_2914at 3498.338 kb on - strand, within Psyr_2914at 3498.383 kb on + strand, within Psyr_2914at 3498.384 kb on - strand, within Psyr_2914at 3498.397 kb on - strand, within Psyr_2914at 3498.397 kb on - strand, within Psyr_2914at 3498.422 kb on + strand, within Psyr_2914at 3498.422 kb on + strand, within Psyr_2914at 3498.422 kb on + strand, within Psyr_2914at 3498.423 kb on - strand, within Psyr_2914at 3498.429 kb on - strand, within Psyr_2914at 3498.515 kb on + strand, within Psyr_2914at 3498.516 kb on - strand, within Psyr_2914at 3498.516 kb on - strand, within Psyr_2914at 3498.540 kb on + strand, within Psyr_2914at 3498.541 kb on - strand, within Psyr_2914at 3498.541 kb on - strand, within Psyr_2914at 3498.544 kb on + strand, within Psyr_2914at 3498.544 kb on + strand, within Psyr_2914at 3498.544 kb on + strand, within Psyr_2914at 3498.544 kb on + strand, within Psyr_2914at 3498.544 kb on + strand, within Psyr_2914at 3498.544 kb on + strand, within Psyr_2914at 3498.544 kb on + strand, within Psyr_2914at 3498.544 kb on + strand, within Psyr_2914at 3498.544 kb on + strand, within Psyr_2914at 3498.545 kb on - strand, within Psyr_2914at 3498.545 kb on - strand, within Psyr_2914at 3498.545 kb on - strand, within Psyr_2914at 3498.545 kb on - strand, within Psyr_2914at 3498.545 kb on - strand, within Psyr_2914at 3498.548 kb on + strand, within Psyr_2914at 3498.548 kb on + strand, within Psyr_2914at 3498.548 kb on + strand, within Psyr_2914at 3498.548 kb on + strand, within Psyr_2914at 3498.548 kb on + strand, within Psyr_2914at 3498.548 kb on + strand, within Psyr_2914at 3498.548 kb on + strand, within Psyr_2914at 3498.548 kb on + strand, within Psyr_2914at 3498.548 kb on + strand, within Psyr_2914at 3498.549 kb on - strand, within Psyr_2914at 3498.549 kb on - strand, within Psyr_2914at 3498.549 kb on - strand, within Psyr_2914at 3498.549 kb on - strand, within Psyr_2914at 3498.549 kb on - strand, within Psyr_2914at 3498.549 kb on - strand, within Psyr_2914at 3498.549 kb on - strand, within Psyr_2914at 3498.549 kb on - strand, within Psyr_2914at 3498.549 kb on - strand, within Psyr_2914

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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3,495,704 - Psyr_2912 0.39 -1.0
3,495,776 - Psyr_2912 0.46 +0.2
3,496,404 - +0.5
3,496,407 - -0.5
3,496,483 + -0.7
3,496,552 + +0.6
3,496,586 - -0.1
3,496,588 + +0.3
3,496,631 + -2.0
3,496,631 + +0.1
3,496,631 + -0.6
3,496,632 - -0.4
3,497,050 + Psyr_2913 0.45 -1.6
3,497,050 + Psyr_2913 0.45 -0.4
3,497,050 + Psyr_2913 0.45 -0.3
3,497,050 + Psyr_2913 0.45 -1.4
3,497,050 + Psyr_2913 0.45 -2.0
3,497,050 + Psyr_2913 0.45 -1.2
3,497,050 + Psyr_2913 0.45 +0.1
3,497,050 + Psyr_2913 0.45 -1.7
3,497,050 + Psyr_2913 0.45 +0.2
3,497,050 + Psyr_2913 0.45 +0.4
3,497,050 + Psyr_2913 0.45 -1.2
3,497,050 + Psyr_2913 0.45 +0.6
3,497,050 + Psyr_2913 0.45 -1.0
3,497,050 + Psyr_2913 0.45 -2.0
3,497,051 - Psyr_2913 0.45 -2.3
3,497,051 - Psyr_2913 0.45 +0.2
3,497,051 - Psyr_2913 0.45 +0.7
3,497,051 - Psyr_2913 0.45 -0.5
3,497,105 - Psyr_2913 0.51 -0.8
3,497,342 + Psyr_2913 0.77 -1.0
3,497,343 - Psyr_2913 0.77 +0.6
3,497,575 - -2.2
3,497,582 + +0.3
3,497,599 - -1.7
3,497,616 + -1.0
3,497,617 - -1.0
3,497,664 + +1.1
3,497,684 - +0.0
3,497,684 - +0.9
3,497,684 - +0.6
3,497,684 - +0.4
3,497,687 + -2.2
3,497,688 - -1.4
3,497,736 + -1.6
3,497,795 + -1.2
3,497,796 - -1.4
3,497,796 - +0.4
3,497,800 - -0.7
3,497,810 - -2.0
3,497,839 + +1.2
3,497,839 + -1.6
3,497,864 + -3.2
3,497,865 - -0.2
3,497,944 + -0.1
3,497,979 - +0.6
3,498,002 + -1.0
3,498,003 - -0.5
3,498,003 - -0.4
3,498,006 + -1.4
3,498,006 + -1.8
3,498,006 + -0.1
3,498,006 + +0.1
3,498,006 + -0.2
3,498,006 + +1.0
3,498,006 + +0.1
3,498,006 + -2.1
3,498,006 + -0.4
3,498,007 - +0.7
3,498,007 - -0.2
3,498,007 - +0.6
3,498,058 + -1.7
3,498,059 - -0.6
3,498,059 - +0.3
3,498,067 + -1.8
3,498,067 + -1.0
3,498,067 + +0.6
3,498,068 - +0.8
3,498,098 + -0.1
3,498,098 + -0.4
3,498,130 + -0.8
3,498,131 - -0.7
3,498,131 - +0.2
3,498,131 - -0.8
3,498,135 - +1.9
3,498,135 - +0.6
3,498,158 + +0.8
3,498,159 - -0.1
3,498,159 - -1.6
3,498,272 + Psyr_2914 0.11 +0.4
3,498,272 + Psyr_2914 0.11 +0.6
3,498,273 - Psyr_2914 0.11 +0.8
3,498,273 - Psyr_2914 0.11 +0.1
3,498,276 - Psyr_2914 0.11 -0.7
3,498,338 - Psyr_2914 0.12 -0.9
3,498,383 + Psyr_2914 0.13 +0.1
3,498,384 - Psyr_2914 0.13 -0.1
3,498,397 - Psyr_2914 0.14 +1.6
3,498,397 - Psyr_2914 0.14 -0.3
3,498,422 + Psyr_2914 0.14 +1.3
3,498,422 + Psyr_2914 0.14 +0.9
3,498,422 + Psyr_2914 0.14 -0.2
3,498,423 - Psyr_2914 0.14 +2.2
3,498,429 - Psyr_2914 0.14 +1.1
3,498,515 + Psyr_2914 0.16 +1.2
3,498,516 - Psyr_2914 0.16 +0.0
3,498,516 - Psyr_2914 0.16 +1.0
3,498,540 + Psyr_2914 0.17 -0.1
3,498,541 - Psyr_2914 0.17 +2.2
3,498,541 - Psyr_2914 0.17 +0.8
3,498,544 + Psyr_2914 0.17 -0.2
3,498,544 + Psyr_2914 0.17 -1.5
3,498,544 + Psyr_2914 0.17 +0.5
3,498,544 + Psyr_2914 0.17 -0.3
3,498,544 + Psyr_2914 0.17 -1.0
3,498,544 + Psyr_2914 0.17 -0.6
3,498,544 + Psyr_2914 0.17 -0.7
3,498,544 + Psyr_2914 0.17 -1.2
3,498,544 + Psyr_2914 0.17 -2.9
3,498,545 - Psyr_2914 0.17 +0.6
3,498,545 - Psyr_2914 0.17 +0.6
3,498,545 - Psyr_2914 0.17 -1.7
3,498,545 - Psyr_2914 0.17 -0.1
3,498,545 - Psyr_2914 0.17 -0.7
3,498,548 + Psyr_2914 0.17 -0.9
3,498,548 + Psyr_2914 0.17 +0.3
3,498,548 + Psyr_2914 0.17 -0.4
3,498,548 + Psyr_2914 0.17 +0.2
3,498,548 + Psyr_2914 0.17 +0.3
3,498,548 + Psyr_2914 0.17 -0.5
3,498,548 + Psyr_2914 0.17 -1.4
3,498,548 + Psyr_2914 0.17 -1.0
3,498,548 + Psyr_2914 0.17 +0.0
3,498,549 - Psyr_2914 0.17 +1.2
3,498,549 - Psyr_2914 0.17 +0.0
3,498,549 - Psyr_2914 0.17 -2.7
3,498,549 - Psyr_2914 0.17 -1.9
3,498,549 - Psyr_2914 0.17 +1.6
3,498,549 - Psyr_2914 0.17 +0.0
3,498,549 - Psyr_2914 0.17 -0.9
3,498,549 - Psyr_2914 0.17 -1.0
3,498,549 - Psyr_2914 0.17 -0.2

Or see this region's nucleotide sequence