Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2854

Experiment: KB with Nitrofurantoin 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 125 ug/ml
3,424,774	+				-1.4
3,424,774	+				+1.3
3,424,860	+				-0.1
3,424,860	+				+0.3
3,424,861	-				-0.5
3,424,861	-				+0.8
3,424,861	-				-0.6
3,424,916	-				+1.4
3,424,916	-				-0.7
3,424,943	+				-2.6
3,424,943	+				-2.7
3,424,944	-				-0.1
3,425,058	+		Psyr_2853	0.23	-3.1
3,425,058	+		Psyr_2853	0.23	-0.7
3,425,062	+		Psyr_2853	0.24	-2.2
3,425,062	+		Psyr_2853	0.24	+0.2
3,425,062	+		Psyr_2853	0.24	-1.6
3,425,063	-		Psyr_2853	0.24	+0.3
3,425,063	-		Psyr_2853	0.24	-0.1
3,425,063	-		Psyr_2853	0.24	+2.1
3,425,120	-		Psyr_2853	0.36	-0.4
3,425,133	+		Psyr_2853	0.38	-1.0
3,425,134	-		Psyr_2853	0.39	-0.0
3,425,134	-		Psyr_2853	0.39	-0.9
3,425,171	+		Psyr_2853	0.46	-1.0
3,425,171	+		Psyr_2853	0.46	-3.3
3,425,171	+		Psyr_2853	0.46	-0.7
3,425,171	+		Psyr_2853	0.46	-2.2
3,425,172	-		Psyr_2853	0.46	-0.8
3,425,172	-		Psyr_2853	0.46	+2.0
3,425,176	-		Psyr_2853	0.47	-0.7
3,425,176	-		Psyr_2853	0.47	+1.3
3,425,196	+		Psyr_2853	0.51	+0.9
3,425,197	-		Psyr_2853	0.51	+0.1
3,425,197	-		Psyr_2853	0.51	-0.0
3,425,271	-		Psyr_2853	0.66	+1.0
3,425,341	+		Psyr_2853	0.80	-0.8
3,425,341	+		Psyr_2853	0.80	+0.0
3,425,342	-		Psyr_2853	0.80	-1.2
3,425,407	+				-1.4
3,425,407	+				+0.3
3,425,407	+				-2.4
3,425,407	+				-1.6
3,425,408	-				-0.1
3,425,408	-				+0.6
3,425,456	+				-0.9
3,425,456	+				-1.5
3,425,457	-				-0.4
3,425,457	-				+0.6
3,425,458	+				-1.6
3,425,510	-				+0.8
3,425,551	+				-0.7
3,425,551	+				-1.7
3,425,552	-				+0.6
3,425,608	+				+0.1
3,425,608	+				+0.0
3,425,639	+				+0.4
3,425,693	+				+0.0
3,425,802	+				-0.9
3,425,883	-		Psyr_2854	0.13	-3.3
3,425,885	+		Psyr_2854	0.14	-1.4
3,425,954	+		Psyr_2854	0.21	-1.3
3,425,996	+		Psyr_2854	0.25	+1.4
3,426,109	-		Psyr_2854	0.36	-3.0
3,426,238	-		Psyr_2854	0.49	+0.0
3,426,297	+		Psyr_2854	0.55	-0.5
3,426,297	+		Psyr_2854	0.55	-0.6
3,426,298	-		Psyr_2854	0.56	-2.0
3,426,328	+		Psyr_2854	0.59	-0.6
3,426,373	-		Psyr_2854	0.63	-1.7
3,426,403	-		Psyr_2854	0.66	-0.4
3,426,468	+		Psyr_2854	0.73	-0.1
3,426,469	-		Psyr_2854	0.73	-0.4
3,426,486	-		Psyr_2854	0.75	-4.0
3,426,540	+		Psyr_2854	0.80	-1.0
3,426,540	+		Psyr_2854	0.80	-0.4
3,426,540	+		Psyr_2854	0.80	+1.0
3,426,541	-		Psyr_2854	0.80	-2.0
3,426,541	-		Psyr_2854	0.80	-1.7
3,426,541	-		Psyr_2854	0.80	-1.0
3,426,541	-		Psyr_2854	0.80	-0.4
3,426,618	+		Psyr_2854	0.88	-1.7
3,426,619	-		Psyr_2854	0.88	-2.0
3,426,690	+				+0.5
3,426,690	+				-1.8
3,426,740	+				+0.1
3,426,751	+				+0.0
3,426,751	+				+0.1
3,426,757	+				-0.8
3,426,970	+		Psyr_2855	0.21	-2.6
3,426,970	+		Psyr_2855	0.21	-0.7
3,426,976	+		Psyr_2855	0.21	-0.8
3,426,976	+		Psyr_2855	0.21	-1.8
3,427,021	+		Psyr_2855	0.25	+0.0
3,427,194	-		Psyr_2855	0.42	-1.8
3,427,369	+				-0.7
3,427,390	+		Psyr_2855	0.61	-2.7
3,427,390	+		Psyr_2855	0.61	-1.2
3,427,390	+		Psyr_2855	0.61	-1.4
3,427,391	-		Psyr_2855	0.61	+2.2
3,427,391	-		Psyr_2855	0.61	-3.8
3,427,461	-		Psyr_2855	0.68	-2.6