Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2810

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2808 and Psyr_2809 overlap by 4 nucleotidesPsyr_2809 and Psyr_2810 overlap by 14 nucleotidesPsyr_2810 and Psyr_2811 are separated by 33 nucleotidesPsyr_2811 and Psyr_2812 are separated by 395 nucleotides Psyr_2808: Psyr_2808 - hypothetical protein, at 3,385,197 to 3,385,478 _2808 Psyr_2809: Psyr_2809 - hypothetical protein, at 3,385,475 to 3,386,272 _2809 Psyr_2810: Psyr_2810 - hypothetical protein, at 3,386,259 to 3,387,236 _2810 Psyr_2811: Psyr_2811 - hypothetical protein, at 3,387,270 to 3,387,692 _2811 Psyr_2812: Psyr_2812 - phage repressor protein, Serine peptidase, MEROPS family S24, at 3,388,088 to 3,388,738 _2812 Position (kb) 3386 3387 3388Strain fitness (log2 ratio) -2 -1 0 1 2at 3385.301 kb on + strand, within Psyr_2808at 3385.301 kb on + strand, within Psyr_2808at 3385.302 kb on - strand, within Psyr_2808at 3385.305 kb on - strand, within Psyr_2808at 3385.734 kb on + strand, within Psyr_2809at 3385.735 kb on - strand, within Psyr_2809at 3385.735 kb on - strand, within Psyr_2809at 3385.878 kb on + strand, within Psyr_2809at 3385.879 kb on - strand, within Psyr_2809at 3385.970 kb on - strand, within Psyr_2809at 3386.142 kb on + strand, within Psyr_2809at 3386.266 kb on + strandat 3386.266 kb on + strandat 3386.266 kb on + strandat 3386.267 kb on - strandat 3386.267 kb on - strandat 3386.267 kb on - strandat 3386.407 kb on + strand, within Psyr_2810at 3386.493 kb on + strand, within Psyr_2810at 3386.493 kb on + strandat 3386.493 kb on + strand, within Psyr_2810at 3386.493 kb on + strand, within Psyr_2810at 3386.581 kb on + strand, within Psyr_2810at 3386.605 kb on + strand, within Psyr_2810at 3386.605 kb on + strand, within Psyr_2810at 3386.605 kb on + strand, within Psyr_2810at 3386.605 kb on + strand, within Psyr_2810at 3386.606 kb on + strand, within Psyr_2810at 3386.606 kb on - strand, within Psyr_2810at 3386.606 kb on - strand, within Psyr_2810at 3386.606 kb on - strand, within Psyr_2810at 3386.783 kb on + strand, within Psyr_2810at 3386.783 kb on + strand, within Psyr_2810at 3386.784 kb on - strand, within Psyr_2810at 3386.784 kb on - strand, within Psyr_2810at 3386.864 kb on + strand, within Psyr_2810at 3386.864 kb on + strand, within Psyr_2810at 3386.898 kb on + strand, within Psyr_2810at 3386.909 kb on - strand, within Psyr_2810at 3386.975 kb on + strand, within Psyr_2810at 3387.151 kb on + strandat 3387.229 kb on + strandat 3387.578 kb on + strand, within Psyr_2811at 3387.578 kb on + strand, within Psyr_2811at 3387.696 kb on + strandat 3387.792 kb on + strandat 3387.839 kb on + strandat 3387.932 kb on + strandat 3388.073 kb on + strandat 3388.075 kb on + strandat 3388.075 kb on + strandat 3388.083 kb on + strandat 3388.083 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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3,385,301 + Psyr_2808 0.37 -0.8
3,385,301 + Psyr_2808 0.37 -0.9
3,385,302 - Psyr_2808 0.37 +0.4
3,385,305 - Psyr_2808 0.38 +1.0
3,385,734 + Psyr_2809 0.32 -0.2
3,385,735 - Psyr_2809 0.33 -0.4
3,385,735 - Psyr_2809 0.33 -1.1
3,385,878 + Psyr_2809 0.51 +0.1
3,385,879 - Psyr_2809 0.51 -0.7
3,385,970 - Psyr_2809 0.62 -0.2
3,386,142 + Psyr_2809 0.84 -0.6
3,386,266 + +0.4
3,386,266 + -1.4
3,386,266 + -0.2
3,386,267 - +0.9
3,386,267 - -0.6
3,386,267 - -0.4
3,386,407 + Psyr_2810 0.15 -0.4
3,386,493 + Psyr_2810 0.24 -0.2
3,386,493 + +1.2
3,386,493 + Psyr_2810 0.24 +0.4
3,386,493 + Psyr_2810 0.24 -0.7
3,386,581 + Psyr_2810 0.33 +1.6
3,386,605 + Psyr_2810 0.35 +0.0
3,386,605 + Psyr_2810 0.35 -0.5
3,386,605 + Psyr_2810 0.35 +0.9
3,386,605 + Psyr_2810 0.35 -0.9
3,386,606 + Psyr_2810 0.35 -0.7
3,386,606 - Psyr_2810 0.35 -1.7
3,386,606 - Psyr_2810 0.35 +0.6
3,386,606 - Psyr_2810 0.35 -0.6
3,386,783 + Psyr_2810 0.54 +0.6
3,386,783 + Psyr_2810 0.54 -0.8
3,386,784 - Psyr_2810 0.54 -0.5
3,386,784 - Psyr_2810 0.54 -1.0
3,386,864 + Psyr_2810 0.62 +1.0
3,386,864 + Psyr_2810 0.62 -0.9
3,386,898 + Psyr_2810 0.65 +0.6
3,386,909 - Psyr_2810 0.66 -0.2
3,386,975 + Psyr_2810 0.73 -2.0
3,387,151 + -1.0
3,387,229 + -0.7
3,387,578 + Psyr_2811 0.73 -0.4
3,387,578 + Psyr_2811 0.73 +0.4
3,387,696 + +0.6
3,387,792 + +2.1
3,387,839 + +0.5
3,387,932 + +2.2
3,388,073 + -0.4
3,388,075 + -0.4
3,388,075 + -0.7
3,388,083 + +0.8
3,388,083 + +0.3

Or see this region's nucleotide sequence