Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2087

Experiment: KB with Nitrofurantoin 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 125 ug/ml
2,431,650	+		Psyr_2086	0.18	+0.2
2,431,650	+		Psyr_2086	0.18	-0.1
2,431,650	+		Psyr_2086	0.18	+1.0
2,431,650	+		Psyr_2086	0.18	-0.4
2,431,650	+		Psyr_2086	0.18	+0.7
2,431,650	+		Psyr_2086	0.18	-0.7
2,431,651	-		Psyr_2086	0.18	-0.2
2,431,651	-		Psyr_2086	0.18	+0.4
2,431,651	-		Psyr_2086	0.18	-0.6
2,431,651	-		Psyr_2086	0.18	+0.6
2,431,651	-		Psyr_2086	0.18	+0.3
2,431,651	-		Psyr_2086	0.18	-0.6
2,431,653	-		Psyr_2086	0.18	+0.4
2,432,065	-		Psyr_2086	0.55	-0.7
2,432,236	-		Psyr_2086	0.70	-0.4
2,432,385	+		Psyr_2086	0.83	-0.1
2,432,385	+		Psyr_2086	0.83	-0.0
2,432,386	-		Psyr_2086	0.83	-1.7
2,432,526	+				+0.6
2,432,526	+				+0.5
2,432,526	+				-1.4
2,432,527	-				+0.9
2,432,571	+				-1.1
2,432,688	-				+0.6
2,432,732	+				-1.6
2,432,747	+				+1.2
2,432,747	+				-0.7
2,432,747	+				-0.3
2,433,632	+				+0.0
2,433,633	-		Psyr_2087	0.38	-1.3
2,433,633	-		Psyr_2087	0.38	+0.6
2,433,681	-		Psyr_2087	0.40	-1.6
2,433,718	-		Psyr_2087	0.42	-0.7
2,434,172	-		Psyr_2087	0.59	-0.1
2,434,226	+		Psyr_2087	0.61	+0.0
2,434,227	-		Psyr_2087	0.61	+0.0
2,434,227	-		Psyr_2087	0.61	-1.0
2,434,382	+		Psyr_2087	0.67	-1.5
2,434,382	+		Psyr_2087	0.67	+0.4
2,434,382	+		Psyr_2087	0.67	+0.8
2,434,383	-		Psyr_2087	0.67	-0.4
2,434,383	-		Psyr_2087	0.67	-0.9
2,434,383	-		Psyr_2087	0.67	-0.9
2,434,383	-		Psyr_2087	0.67	-0.4
2,434,383	-		Psyr_2087	0.67	-2.9
2,434,383	-		Psyr_2087	0.67	-0.6
2,434,383	-		Psyr_2087	0.67	+0.0
2,434,383	-		Psyr_2087	0.67	-0.4
2,434,383	-		Psyr_2087	0.67	-3.4
2,434,383	-		Psyr_2087	0.67	-2.0
2,434,383	-		Psyr_2087	0.67	-0.6
2,434,460	+		Psyr_2087	0.70	-0.1
2,434,460	+		Psyr_2087	0.70	-0.1
2,434,461	-		Psyr_2087	0.70	-0.1
2,434,461	-		Psyr_2087	0.70	-3.4
2,434,817	+		Psyr_2087	0.84	-0.3
2,434,818	-		Psyr_2087	0.84	+0.4
2,434,818	-		Psyr_2087	0.84	-1.5
2,434,818	-		Psyr_2087	0.84	-2.0
2,434,818	-		Psyr_2087	0.84	+0.2
2,434,818	-		Psyr_2087	0.84	+0.6
2,435,164	+				-0.4
2,435,164	+				+0.0
2,435,164	+				+2.4
2,435,164	+				+0.2
2,435,165	-				-1.7
2,435,168	+				+0.9
2,435,168	+				+1.0
2,435,228	+				+0.1
2,435,228	+				+0.4
2,435,228	+				+0.2
2,435,228	+				-0.4
2,435,228	+				+0.0
2,435,229	-				-1.0
2,435,229	-				-1.0
2,435,229	-				-2.0
2,435,229	-				+1.6
2,435,232	+				+0.3
2,435,232	+				+0.6
2,435,233	-				-1.1
2,435,274	-				-0.6
2,435,403	+				-0.9
2,435,403	+				-0.2
2,435,403	+				+1.9
2,435,403	+				-0.5
2,435,403	+				+0.0
2,435,403	+				+0.2
2,435,403	+				-1.7
2,435,404	-				-0.4
2,435,404	-				-1.0
2,435,404	-				-0.6
2,435,404	-				-2.0
2,435,404	-				+0.6
2,435,404	-				-1.0
2,435,404	-				-0.6
2,435,404	-				-0.7
2,435,404	-				+0.9
2,435,404	-				+0.6
2,435,622	+		Psyr_2088	0.21	-0.4
2,435,623	-		Psyr_2088	0.21	+0.6
2,436,228	+		Psyr_2088	0.72	-0.4