Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1896

Experiment: KB with Nitrofurantoin 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 125 ug/ml
2,166,151	+				-0.4
2,166,151	+				-0.6
2,166,151	+				-0.4
2,166,151	+				-1.4
2,166,151	+				-1.0
2,166,151	+				+0.8
2,166,152	-				+0.0
2,166,152	-				-2.2
2,166,152	-				+0.2
2,166,152	-				-0.6
2,166,197	-				+0.3
2,166,280	+				-1.1
2,166,281	-				-0.7
2,166,315	+				+0.2
2,166,315	+				-0.7
2,166,428	+				+0.1
2,166,428	+				-2.4
2,166,429	-				+0.1
2,166,429	-				+0.6
2,166,432	+				-1.2
2,166,432	+				+0.1
2,166,432	+				+0.7
2,166,433	-				+0.6
2,166,433	-				+0.2
2,166,433	-				+1.1
2,166,433	-				+0.6
2,166,433	-				+0.6
2,166,487	+				-0.8
2,166,487	+				-0.8
2,166,487	+				-0.7
2,166,487	+				+0.6
2,166,488	-				-1.0
2,166,488	-				-1.6
2,166,488	-				+0.2
2,166,507	+		Psyr_1895	0.13	+0.3
2,166,731	-		Psyr_1895	0.56	-0.6
2,166,731	-		Psyr_1895	0.56	+0.0
2,166,731	-		Psyr_1895	0.56	+0.4
2,167,232	-				-1.7
2,167,338	+		Psyr_1896	0.11	-0.6
2,167,338	-		Psyr_1896	0.11	-1.0
2,167,339	-		Psyr_1896	0.11	-0.5
2,167,339	-		Psyr_1896	0.11	-2.1
2,167,371	+		Psyr_1896	0.11	+1.0
2,167,494	+		Psyr_1896	0.15	-0.4
2,167,494	+		Psyr_1896	0.15	+0.3
2,167,495	-		Psyr_1896	0.15	-2.1
2,167,613	-		Psyr_1896	0.19	+0.9
2,167,680	+		Psyr_1896	0.20	+0.2
2,167,686	+		Psyr_1896	0.21	+0.4
2,167,845	+		Psyr_1896	0.25	+0.6
2,167,977	+		Psyr_1896	0.29	-0.7
2,167,977	+		Psyr_1896	0.29	-1.0
2,167,977	+		Psyr_1896	0.29	+0.6
2,167,978	-		Psyr_1896	0.29	-0.8
2,167,978	-		Psyr_1896	0.29	-0.9
2,167,980	+		Psyr_1896	0.29	+1.9
2,167,980	+		Psyr_1896	0.29	+0.6
2,167,980	+		Psyr_1896	0.29	+0.6
2,167,981	-		Psyr_1896	0.29	-1.0
2,168,057	-		Psyr_1896	0.31	-0.4
2,168,071	+		Psyr_1896	0.32	+0.5
2,168,167	+		Psyr_1896	0.35	-0.8
2,168,421	+		Psyr_1896	0.42	+0.2
2,168,421	+		Psyr_1896	0.42	-2.0
2,168,422	-		Psyr_1896	0.42	-0.1
2,168,422	-		Psyr_1896	0.42	+0.4
2,168,422	-		Psyr_1896	0.42	-0.6
2,168,677	-		Psyr_1896	0.49	-0.6
2,168,703	+		Psyr_1896	0.50	-0.0
2,168,703	+		Psyr_1896	0.50	-0.3
2,168,703	+		Psyr_1896	0.50	+0.8
2,168,704	-		Psyr_1896	0.50	+0.6
2,168,704	-		Psyr_1896	0.50	-0.1
2,168,859	+		Psyr_1896	0.55	-0.2
2,168,859	+		Psyr_1896	0.55	-0.6
2,168,859	+		Psyr_1896	0.55	-1.5
2,168,859	+		Psyr_1896	0.55	+0.1
2,168,859	+		Psyr_1896	0.55	-0.4
2,168,859	+		Psyr_1896	0.55	+0.3
2,168,860	-		Psyr_1896	0.55	-1.0
2,168,860	-		Psyr_1896	0.55	+0.6
2,168,860	-		Psyr_1896	0.55	-0.7
2,168,860	-		Psyr_1896	0.55	+0.6
2,168,941	-		Psyr_1896	0.57	+0.0
2,169,465	-		Psyr_1896	0.72	-1.4
2,169,606	+		Psyr_1896	0.76	+0.6
2,169,648	+		Psyr_1896	0.77	-0.8
2,169,648	+		Psyr_1896	0.77	+0.0
2,169,648	+		Psyr_1896	0.77	-0.7
2,169,648	+		Psyr_1896	0.77	+0.2
2,169,648	+		Psyr_1896	0.77	-1.0
2,169,648	+		Psyr_1896	0.77	-0.6
2,169,648	+		Psyr_1896	0.77	+0.0
2,169,649	-		Psyr_1896	0.77	-1.2
2,169,649	-		Psyr_1896	0.77	-0.4
2,169,649	-		Psyr_1896	0.77	+1.6
2,169,649	-		Psyr_1896	0.77	-2.4
2,169,649	-		Psyr_1896	0.77	-0.3
2,169,649	-		Psyr_1896	0.77	+0.3
2,169,649	-		Psyr_1896	0.77	+1.0
2,169,649	-		Psyr_1896	0.77	+0.3
2,169,649	-		Psyr_1896	0.77	-1.0
2,169,651	+		Psyr_1896	0.78	+0.6
2,169,652	-		Psyr_1896	0.78	-0.1
2,169,652	-		Psyr_1896	0.78	+0.5
2,169,674	-		Psyr_1896	0.78	+1.6
2,169,674	-		Psyr_1896	0.78	+0.3
2,169,957	+		Psyr_1896	0.86	-2.0
2,169,957	+		Psyr_1896	0.86	-0.0
2,170,237	+				+0.6
2,170,237	+				+0.3
2,170,237	+				-0.2
2,170,237	+				+0.2
2,170,237	+				+0.1
2,170,238	-				-1.0
2,170,238	-				-0.4
2,170,505	+				-0.6
2,170,506	-				-0.9
2,170,508	+				+0.3
2,170,515	+				-1.0
2,170,516	-				+0.1
2,170,536	+				-0.4
2,170,536	+				-1.0
2,170,536	+				+0.3
2,170,537	-				-0.7
2,170,537	-				-0.8
2,170,537	-				-0.6
2,170,549	+				+1.1
2,170,589	+				-1.7
2,170,589	+				-0.4
2,170,589	+				+0.9
2,170,594	+				+0.2
2,170,594	+				+0.0
2,170,614	+				-1.3
2,170,614	+				+2.6
2,170,731	-				+1.2
2,170,731	-				-1.1
2,170,749	+				+2.6
2,170,750	-				+0.6
2,170,750	-				+0.3
2,170,844	-				-0.4
2,171,214	-		Psyr_1897	0.41	+1.1
2,171,274	+				+1.2