Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1883

Experiment: KB with Nitrofurantoin 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 125 ug/ml
2,153,827	+				+0.9
2,153,827	+				+0.6
2,153,827	+				-0.1
2,153,828	-				+0.4
2,153,828	-				-0.8
2,153,828	-				-1.1
2,153,934	+				+0.4
2,153,935	-				-1.2
2,153,971	+				-1.0
2,154,013	-				-1.8
2,154,084	+		Psyr_1882	0.18	-0.5
2,154,084	+		Psyr_1882	0.18	+0.1
2,154,085	-		Psyr_1882	0.18	+1.5
2,154,144	+		Psyr_1882	0.30	-0.7
2,154,145	-		Psyr_1882	0.30	+0.8
2,154,145	-		Psyr_1882	0.30	+0.5
2,154,145	-		Psyr_1882	0.30	-1.2
2,154,166	+		Psyr_1882	0.34	+0.3
2,154,166	+		Psyr_1882	0.34	+0.9
2,154,167	-		Psyr_1882	0.35	-0.6
2,154,167	-		Psyr_1882	0.35	+1.2
2,154,173	+		Psyr_1882	0.36	+0.1
2,154,408	+		Psyr_1882	0.82	+0.2
2,154,409	-		Psyr_1882	0.83	+0.9
2,154,530	-				+0.6
2,154,530	-				+0.9
2,154,530	-				-0.1
2,154,534	+				-1.2
2,154,534	+				+0.9
2,154,567	-				+0.7
2,154,651	+				+0.2
2,154,652	-				+0.9
2,154,670	+				-1.5
2,154,782	+		Psyr_1883	0.27	+2.6
2,154,844	+		Psyr_1883	0.51	+0.9
2,154,844	+		Psyr_1883	0.51	+0.5
2,154,844	+		Psyr_1883	0.51	+2.2
2,154,845	-		Psyr_1883	0.52	+0.5
2,154,845	-		Psyr_1883	0.52	+0.4
2,154,848	+		Psyr_1883	0.53	+0.2
2,154,872	+		Psyr_1883	0.62	+0.9
2,154,982	+				-0.3
2,154,982	+				+1.4
2,155,141	+				-0.6
2,155,141	+				-0.8
2,155,142	-				+1.3
2,155,142	-				-0.0
2,155,174	+				-1.0
2,155,174	+				+0.6
2,155,174	+				-1.4
2,155,174	+				-0.4
2,155,174	+				+1.9
2,155,175	-				+1.8
2,155,175	-				-0.1
2,155,175	-				-2.2
2,155,250	+				-0.4
2,155,250	+				+1.9
2,155,250	+				+0.1
2,155,250	+				+2.2
2,155,250	+				-1.1
2,155,250	+				-0.0
2,155,250	+				+0.6
2,155,251	-				-1.8
2,155,251	-				+1.2
2,155,251	-				+0.0
2,155,251	-				+0.3
2,155,251	-				-0.5
2,155,251	-				+0.7
2,155,258	+				+0.0
2,155,266	+				-0.7
2,155,308	+				-1.0
2,155,308	+				-1.4
2,155,308	+				+0.9
2,155,309	-				+0.5
2,155,309	-				+0.4
2,155,338	-				-2.0
2,155,375	+				-0.2
2,155,427	-				+0.5
2,155,435	+				-1.2
2,155,436	-				+0.1
2,155,437	+				+0.2
2,155,437	+				+0.0
2,155,437	+				-0.6
2,155,437	+				-0.8
2,155,437	+				-0.9
2,155,437	+				+0.9
2,155,437	+				+0.4
2,155,438	-				+1.9
2,155,438	-				+1.9
2,155,438	-				-1.0
2,155,438	-				+0.6
2,155,438	-				+0.0
2,155,511	+				-1.0
2,155,529	+				-0.1
2,155,529	+				+0.9
2,155,529	+				-0.1
2,155,529	+				-0.7
2,155,533	+				+0.2
2,155,559	+		Psyr_1884	0.11	-0.4
2,155,559	+		Psyr_1884	0.11	+0.6
2,155,560	-		Psyr_1884	0.12	+0.0
2,155,560	-		Psyr_1884	0.12	+1.2
2,155,560	-		Psyr_1884	0.12	-0.8
2,155,560	-		Psyr_1884	0.12	-0.8
2,155,560	-		Psyr_1884	0.12	+0.4
2,155,560	-		Psyr_1884	0.12	+0.9
2,155,560	-		Psyr_1884	0.12	-0.4
2,155,592	-		Psyr_1884	0.29	-0.1
2,155,682	+		Psyr_1884	0.79	-0.2
2,155,682	+		Psyr_1884	0.79	+0.3
2,155,696	+		Psyr_1884	0.87	-1.4
2,155,696	+		Psyr_1884	0.87	+0.8
2,155,696	+		Psyr_1884	0.87	-0.8
2,155,696	+		Psyr_1884	0.87	-0.1
2,155,697	-		Psyr_1884	0.88	+0.4
2,155,697	-		Psyr_1884	0.88	-0.4
2,155,697	-		Psyr_1884	0.88	-0.4
2,155,697	-		Psyr_1884	0.88	+0.6
2,155,736	+				+0.6
2,155,748	+				+0.6
2,155,748	+				+0.4
2,155,748	+				-1.4
2,155,749	-				-1.2
2,155,879	+		Psyr_1885	0.53	+0.8
2,155,880	-		Psyr_1885	0.54	-0.1
2,155,880	-		Psyr_1885	0.54	-0.7
2,155,913	-		Psyr_1885	0.75	-2.0