Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1717

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1716 and Psyr_1717 overlap by 4 nucleotidesPsyr_1717 and Psyr_1718 overlap by 4 nucleotides Psyr_1716: Psyr_1716 - conserved hypothetical protein, at 1,944,575 to 1,946,233 _1716 Psyr_1717: Psyr_1717 - TPR repeat:von Willebrand factor, type A, at 1,946,230 to 1,947,948 _1717 Psyr_1718: Psyr_1718 - von Willebrand factor, type A, at 1,947,945 to 1,949,003 _1718 Position (kb) 1946 1947 1948Strain fitness (log2 ratio) -2 -1 0 1at 1945.360 kb on + strand, within Psyr_1716at 1945.399 kb on + strand, within Psyr_1716at 1945.587 kb on - strand, within Psyr_1716at 1945.595 kb on + strand, within Psyr_1716at 1945.614 kb on + strand, within Psyr_1716at 1945.614 kb on + strand, within Psyr_1716at 1945.761 kb on + strand, within Psyr_1716at 1945.797 kb on + strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1945.798 kb on - strand, within Psyr_1716at 1946.213 kb on + strandat 1946.220 kb on + strandat 1946.221 kb on - strandat 1946.221 kb on - strandat 1946.727 kb on - strand, within Psyr_1717at 1946.792 kb on + strand, within Psyr_1717at 1946.793 kb on - strand, within Psyr_1717at 1947.134 kb on + strand, within Psyr_1717at 1948.093 kb on + strand, within Psyr_1718at 1948.201 kb on + strand, within Psyr_1718at 1948.202 kb on - strand, within Psyr_1718at 1948.439 kb on + strand, within Psyr_1718at 1948.547 kb on - strand, within Psyr_1718at 1948.547 kb on - strand, within Psyr_1718

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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1,945,360 + Psyr_1716 0.47 -0.1
1,945,399 + Psyr_1716 0.50 -0.2
1,945,587 - Psyr_1716 0.61 +0.1
1,945,595 + Psyr_1716 0.61 -0.5
1,945,614 + Psyr_1716 0.63 +0.4
1,945,614 + Psyr_1716 0.63 +0.7
1,945,761 + Psyr_1716 0.71 +0.7
1,945,797 + Psyr_1716 0.74 +1.1
1,945,798 - Psyr_1716 0.74 +0.3
1,945,798 - Psyr_1716 0.74 -0.3
1,945,798 - Psyr_1716 0.74 -0.1
1,945,798 - Psyr_1716 0.74 +0.3
1,945,798 - Psyr_1716 0.74 -1.1
1,945,798 - Psyr_1716 0.74 +0.2
1,945,798 - Psyr_1716 0.74 +0.4
1,946,213 + +1.3
1,946,220 + +0.2
1,946,221 - -2.7
1,946,221 - +1.7
1,946,727 - Psyr_1717 0.29 -0.9
1,946,792 + Psyr_1717 0.33 +0.7
1,946,793 - Psyr_1717 0.33 -0.9
1,947,134 + Psyr_1717 0.53 -1.2
1,948,093 + Psyr_1718 0.14 +0.2
1,948,201 + Psyr_1718 0.24 -1.3
1,948,202 - Psyr_1718 0.24 +1.5
1,948,439 + Psyr_1718 0.47 +1.1
1,948,547 - Psyr_1718 0.57 -0.9
1,948,547 - Psyr_1718 0.57 -0.9

Or see this region's nucleotide sequence