Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1631

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1630 and Psyr_1631 overlap by 4 nucleotidesPsyr_1631 and Psyr_1632 are separated by 136 nucleotides Psyr_1630: Psyr_1630 - ABC transporter, at 1,833,861 to 1,834,793 _1630 Psyr_1631: Psyr_1631 - ABC-2, at 1,834,790 to 1,835,578 _1631 Psyr_1632: Psyr_1632 - ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2, at 1,835,715 to 1,837,931 _1632 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1833.848 kb on + strandat 1833.848 kb on + strandat 1833.861 kb on - strandat 1833.889 kb on + strandat 1833.900 kb on + strandat 1834.174 kb on - strand, within Psyr_1630at 1834.176 kb on + strand, within Psyr_1630at 1834.176 kb on + strand, within Psyr_1630at 1834.177 kb on - strand, within Psyr_1630at 1834.218 kb on + strand, within Psyr_1630at 1834.219 kb on - strand, within Psyr_1630at 1834.372 kb on + strand, within Psyr_1630at 1834.373 kb on - strand, within Psyr_1630at 1834.444 kb on - strand, within Psyr_1630at 1834.444 kb on - strand, within Psyr_1630at 1834.444 kb on - strand, within Psyr_1630at 1834.722 kb on - strandat 1834.724 kb on + strandat 1834.725 kb on - strandat 1834.919 kb on + strand, within Psyr_1631at 1834.919 kb on + strand, within Psyr_1631at 1834.920 kb on - strand, within Psyr_1631at 1834.920 kb on - strand, within Psyr_1631at 1834.976 kb on - strand, within Psyr_1631at 1834.976 kb on - strand, within Psyr_1631at 1834.976 kb on - strand, within Psyr_1631at 1834.979 kb on + strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1835.148 kb on + strand, within Psyr_1631at 1835.148 kb on + strand, within Psyr_1631at 1835.148 kb on + strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.315 kb on - strand, within Psyr_1631at 1835.315 kb on - strand, within Psyr_1631at 1835.354 kb on + strand, within Psyr_1631at 1835.354 kb on + strand, within Psyr_1631at 1835.355 kb on - strand, within Psyr_1631at 1835.355 kb on - strand, within Psyr_1631at 1835.355 kb on - strand, within Psyr_1631at 1835.373 kb on - strand, within Psyr_1631at 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.531 kb on - strandat 1835.576 kb on + strandat 1835.576 kb on + strandat 1835.837 kb on + strandat 1835.841 kb on + strandat 1836.060 kb on + strand, within Psyr_1632at 1836.426 kb on + strand, within Psyr_1632at 1836.427 kb on - strand, within Psyr_1632

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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1,833,848 + -0.9
1,833,848 + -1.9
1,833,861 - -0.0
1,833,889 + -0.1
1,833,900 + +0.1
1,834,174 - Psyr_1630 0.34 -1.0
1,834,176 + Psyr_1630 0.34 +0.4
1,834,176 + Psyr_1630 0.34 +0.7
1,834,177 - Psyr_1630 0.34 +0.9
1,834,218 + Psyr_1630 0.38 +1.0
1,834,219 - Psyr_1630 0.38 -0.9
1,834,372 + Psyr_1630 0.55 -3.0
1,834,373 - Psyr_1630 0.55 +0.0
1,834,444 - Psyr_1630 0.62 -0.7
1,834,444 - Psyr_1630 0.62 -1.1
1,834,444 - Psyr_1630 0.62 +0.3
1,834,722 - +0.7
1,834,724 + -1.3
1,834,725 - -0.6
1,834,919 + Psyr_1631 0.16 -1.1
1,834,919 + Psyr_1631 0.16 +0.2
1,834,920 - Psyr_1631 0.16 -2.3
1,834,920 - Psyr_1631 0.16 +0.3
1,834,976 - Psyr_1631 0.24 +1.5
1,834,976 - Psyr_1631 0.24 +0.1
1,834,976 - Psyr_1631 0.24 -1.6
1,834,979 + Psyr_1631 0.24 -0.2
1,834,980 - Psyr_1631 0.24 -0.1
1,834,980 - Psyr_1631 0.24 +0.9
1,834,980 - Psyr_1631 0.24 +0.3
1,834,980 - Psyr_1631 0.24 -0.3
1,834,980 - Psyr_1631 0.24 +0.5
1,834,980 - Psyr_1631 0.24 +0.6
1,834,988 + Psyr_1631 0.25 +0.2
1,834,988 + Psyr_1631 0.25 +1.3
1,834,988 + Psyr_1631 0.25 +0.1
1,834,988 + Psyr_1631 0.25 -0.4
1,834,988 + Psyr_1631 0.25 +2.7
1,834,988 + Psyr_1631 0.25 +0.3
1,834,988 + Psyr_1631 0.25 -0.2
1,834,988 + Psyr_1631 0.25 +0.6
1,834,989 - Psyr_1631 0.25 +0.8
1,834,989 - Psyr_1631 0.25 -0.1
1,834,989 - Psyr_1631 0.25 +0.4
1,834,989 - Psyr_1631 0.25 -0.3
1,834,989 - Psyr_1631 0.25 +1.1
1,834,989 - Psyr_1631 0.25 +0.8
1,834,989 - Psyr_1631 0.25 +0.4
1,835,148 + Psyr_1631 0.45 -0.3
1,835,148 + Psyr_1631 0.45 +0.4
1,835,148 + Psyr_1631 0.45 -0.2
1,835,149 - Psyr_1631 0.46 +1.3
1,835,149 - Psyr_1631 0.46 +1.4
1,835,149 - Psyr_1631 0.46 -1.1
1,835,149 - Psyr_1631 0.46 -0.0
1,835,149 - Psyr_1631 0.46 +1.0
1,835,214 + Psyr_1631 0.54 +0.7
1,835,214 + Psyr_1631 0.54 -0.9
1,835,214 + Psyr_1631 0.54 +0.2
1,835,214 + Psyr_1631 0.54 -0.5
1,835,215 - Psyr_1631 0.54 +2.3
1,835,215 - Psyr_1631 0.54 +1.2
1,835,215 - Psyr_1631 0.54 -0.2
1,835,215 - Psyr_1631 0.54 +0.7
1,835,215 - Psyr_1631 0.54 -0.0
1,835,215 - Psyr_1631 0.54 -0.1
1,835,215 - Psyr_1631 0.54 +0.7
1,835,215 - Psyr_1631 0.54 -0.5
1,835,315 - Psyr_1631 0.67 +0.3
1,835,315 - Psyr_1631 0.67 +0.2
1,835,354 + Psyr_1631 0.71 -1.3
1,835,354 + Psyr_1631 0.71 +0.3
1,835,355 - Psyr_1631 0.72 +0.1
1,835,355 - Psyr_1631 0.72 -1.7
1,835,355 - Psyr_1631 0.72 -0.9
1,835,373 - Psyr_1631 0.74 +1.5
1,835,528 + +1.5
1,835,528 + -0.5
1,835,528 + +1.0
1,835,528 + -0.6
1,835,528 + -1.6
1,835,529 - +0.4
1,835,529 - +0.9
1,835,529 - +0.7
1,835,529 - +0.1
1,835,529 - -0.3
1,835,529 - -3.3
1,835,529 - -0.9
1,835,529 - +1.0
1,835,529 - -1.6
1,835,531 - +0.3
1,835,576 + +0.3
1,835,576 + +1.7
1,835,837 + +0.6
1,835,841 + +0.6
1,836,060 + Psyr_1632 0.16 +2.0
1,836,426 + Psyr_1632 0.32 -0.9
1,836,427 - Psyr_1632 0.32 +0.4

Or see this region's nucleotide sequence