Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1599

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1598 and Psyr_1599 are separated by 117 nucleotidesPsyr_1599 and Psyr_1600 are separated by 105 nucleotides Psyr_1598: Psyr_1598 - diguanylate cyclase/phosphodiesterase, at 1,795,744 to 1,797,516 _1598 Psyr_1599: Psyr_1599 - C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A, at 1,797,634 to 1,799,748 _1599 Psyr_1600: Psyr_1600 - Zinc-containing alcohol dehydrogenase superfamily, at 1,799,854 to 1,800,816 _1600 Position (kb) 1797 1798 1799 1800Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1796.817 kb on - strand, within Psyr_1598at 1796.817 kb on - strand, within Psyr_1598at 1796.833 kb on + strand, within Psyr_1598at 1796.833 kb on + strand, within Psyr_1598at 1796.833 kb on + strand, within Psyr_1598at 1796.834 kb on - strand, within Psyr_1598at 1796.997 kb on - strand, within Psyr_1598at 1796.997 kb on - strand, within Psyr_1598at 1797.083 kb on + strand, within Psyr_1598at 1797.101 kb on + strand, within Psyr_1598at 1797.102 kb on - strand, within Psyr_1598at 1797.102 kb on - strand, within Psyr_1598at 1797.508 kb on + strandat 1797.508 kb on + strandat 1797.509 kb on - strandat 1797.509 kb on - strandat 1797.610 kb on + strandat 1797.611 kb on - strandat 1797.636 kb on - strandat 1797.668 kb on + strandat 1797.701 kb on + strandat 1797.701 kb on + strandat 1797.701 kb on + strandat 1797.701 kb on + strandat 1798.100 kb on + strand, within Psyr_1599at 1798.100 kb on + strand, within Psyr_1599at 1798.114 kb on + strand, within Psyr_1599at 1798.114 kb on + strand, within Psyr_1599at 1798.117 kb on + strand, within Psyr_1599at 1798.337 kb on + strand, within Psyr_1599at 1798.337 kb on + strand, within Psyr_1599at 1798.337 kb on + strand, within Psyr_1599at 1798.337 kb on + strand, within Psyr_1599at 1798.338 kb on - strand, within Psyr_1599at 1798.338 kb on - strand, within Psyr_1599at 1798.338 kb on - strand, within Psyr_1599at 1798.338 kb on - strand, within Psyr_1599at 1798.553 kb on + strand, within Psyr_1599at 1798.554 kb on - strand, within Psyr_1599at 1798.575 kb on - strand, within Psyr_1599at 1798.592 kb on + strand, within Psyr_1599at 1798.592 kb on + strand, within Psyr_1599at 1798.592 kb on + strand, within Psyr_1599at 1798.592 kb on + strand, within Psyr_1599at 1798.592 kb on + strand, within Psyr_1599at 1798.592 kb on + strand, within Psyr_1599at 1798.593 kb on - strand, within Psyr_1599at 1798.625 kb on + strand, within Psyr_1599at 1798.626 kb on - strand, within Psyr_1599at 1798.626 kb on - strand, within Psyr_1599at 1798.765 kb on + strand, within Psyr_1599at 1799.027 kb on + strand, within Psyr_1599at 1799.027 kb on + strand, within Psyr_1599at 1799.027 kb on + strand, within Psyr_1599at 1799.027 kb on + strand, within Psyr_1599at 1799.028 kb on - strand, within Psyr_1599at 1799.028 kb on - strand, within Psyr_1599at 1799.028 kb on - strand, within Psyr_1599at 1799.028 kb on - strand, within Psyr_1599at 1799.069 kb on + strand, within Psyr_1599at 1799.069 kb on + strand, within Psyr_1599at 1799.070 kb on + strand, within Psyr_1599at 1799.070 kb on - strand, within Psyr_1599at 1799.070 kb on - strand, within Psyr_1599at 1799.070 kb on - strand, within Psyr_1599at 1799.070 kb on - strand, within Psyr_1599at 1799.082 kb on + strand, within Psyr_1599at 1799.082 kb on + strand, within Psyr_1599at 1799.083 kb on - strand, within Psyr_1599at 1799.083 kb on - strand, within Psyr_1599at 1799.084 kb on - strand, within Psyr_1599at 1799.124 kb on + strand, within Psyr_1599at 1799.124 kb on + strand, within Psyr_1599at 1799.125 kb on - strand, within Psyr_1599at 1799.125 kb on - strand, within Psyr_1599at 1799.126 kb on + strand, within Psyr_1599at 1799.286 kb on + strand, within Psyr_1599at 1799.372 kb on + strand, within Psyr_1599at 1799.372 kb on + strand, within Psyr_1599at 1799.372 kb on + strand, within Psyr_1599at 1799.372 kb on + strand, within Psyr_1599at 1799.373 kb on - strand, within Psyr_1599at 1799.373 kb on - strand, within Psyr_1599at 1799.373 kb on - strand, within Psyr_1599at 1799.468 kb on + strand, within Psyr_1599at 1799.468 kb on + strand, within Psyr_1599at 1799.468 kb on + strand, within Psyr_1599at 1799.468 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.507 kb on + strand, within Psyr_1599at 1799.507 kb on + strand, within Psyr_1599at 1799.507 kb on + strand, within Psyr_1599at 1799.508 kb on - strand, within Psyr_1599at 1799.512 kb on - strand, within Psyr_1599at 1799.549 kb on + strandat 1799.549 kb on + strandat 1799.549 kb on + strandat 1799.550 kb on - strandat 1799.643 kb on + strandat 1799.644 kb on - strandat 1799.704 kb on + strandat 1799.705 kb on - strandat 1799.705 kb on - strandat 1799.748 kb on + strandat 1799.749 kb on - strandat 1799.749 kb on - strandat 1799.749 kb on - strandat 1799.752 kb on - strandat 1799.842 kb on + strandat 1799.842 kb on + strandat 1799.930 kb on + strandat 1799.930 kb on + strandat 1799.930 kb on + strandat 1799.931 kb on - strandat 1799.931 kb on - strandat 1799.934 kb on + strandat 1799.934 kb on + strandat 1799.935 kb on - strandat 1799.935 kb on - strandat 1799.935 kb on - strandat 1799.935 kb on - strandat 1799.976 kb on - strand, within Psyr_1600at 1799.992 kb on + strand, within Psyr_1600at 1799.992 kb on + strand, within Psyr_1600at 1800.208 kb on + strand, within Psyr_1600at 1800.208 kb on + strand, within Psyr_1600at 1800.208 kb on + strand, within Psyr_1600at 1800.373 kb on + strand, within Psyr_1600at 1800.374 kb on - strand, within Psyr_1600at 1800.481 kb on + strand, within Psyr_1600at 1800.497 kb on + strand, within Psyr_1600at 1800.498 kb on - strand, within Psyr_1600at 1800.498 kb on - strand, within Psyr_1600

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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1,796,817 - Psyr_1598 0.61 +0.8
1,796,817 - Psyr_1598 0.61 +0.5
1,796,833 + Psyr_1598 0.61 -1.2
1,796,833 + Psyr_1598 0.61 -1.6
1,796,833 + Psyr_1598 0.61 +0.5
1,796,834 - Psyr_1598 0.61 +0.3
1,796,997 - Psyr_1598 0.71 +1.3
1,796,997 - Psyr_1598 0.71 +0.8
1,797,083 + Psyr_1598 0.76 -0.5
1,797,101 + Psyr_1598 0.77 -0.8
1,797,102 - Psyr_1598 0.77 +0.0
1,797,102 - Psyr_1598 0.77 +0.3
1,797,508 + -0.8
1,797,508 + -0.9
1,797,509 - -1.4
1,797,509 - +0.1
1,797,610 + -0.7
1,797,611 - -0.8
1,797,636 - -1.6
1,797,668 + -0.9
1,797,701 + -0.8
1,797,701 + -0.2
1,797,701 + -0.8
1,797,701 + -0.1
1,798,100 + Psyr_1599 0.22 +0.2
1,798,100 + Psyr_1599 0.22 +1.3
1,798,114 + Psyr_1599 0.23 -0.9
1,798,114 + Psyr_1599 0.23 -0.2
1,798,117 + Psyr_1599 0.23 -1.7
1,798,337 + Psyr_1599 0.33 -0.1
1,798,337 + Psyr_1599 0.33 +0.4
1,798,337 + Psyr_1599 0.33 -0.8
1,798,337 + Psyr_1599 0.33 -0.8
1,798,338 - Psyr_1599 0.33 +0.8
1,798,338 - Psyr_1599 0.33 -0.5
1,798,338 - Psyr_1599 0.33 -1.0
1,798,338 - Psyr_1599 0.33 -1.5
1,798,553 + Psyr_1599 0.43 -0.3
1,798,554 - Psyr_1599 0.43 -0.6
1,798,575 - Psyr_1599 0.44 +0.4
1,798,592 + Psyr_1599 0.45 -0.4
1,798,592 + Psyr_1599 0.45 -1.8
1,798,592 + Psyr_1599 0.45 -1.6
1,798,592 + Psyr_1599 0.45 -1.4
1,798,592 + Psyr_1599 0.45 -1.0
1,798,592 + Psyr_1599 0.45 -1.0
1,798,593 - Psyr_1599 0.45 -0.2
1,798,625 + Psyr_1599 0.47 -0.1
1,798,626 - Psyr_1599 0.47 -1.2
1,798,626 - Psyr_1599 0.47 -0.4
1,798,765 + Psyr_1599 0.53 -2.1
1,799,027 + Psyr_1599 0.66 -1.4
1,799,027 + Psyr_1599 0.66 -0.1
1,799,027 + Psyr_1599 0.66 +0.1
1,799,027 + Psyr_1599 0.66 -0.1
1,799,028 - Psyr_1599 0.66 -1.2
1,799,028 - Psyr_1599 0.66 -1.9
1,799,028 - Psyr_1599 0.66 +0.1
1,799,028 - Psyr_1599 0.66 +0.4
1,799,069 + Psyr_1599 0.68 +0.3
1,799,069 + Psyr_1599 0.68 -1.2
1,799,070 + Psyr_1599 0.68 -1.9
1,799,070 - Psyr_1599 0.68 +0.9
1,799,070 - Psyr_1599 0.68 -1.6
1,799,070 - Psyr_1599 0.68 +0.2
1,799,070 - Psyr_1599 0.68 +0.4
1,799,082 + Psyr_1599 0.68 +0.8
1,799,082 + Psyr_1599 0.68 -0.3
1,799,083 - Psyr_1599 0.69 -1.4
1,799,083 - Psyr_1599 0.69 -0.4
1,799,084 - Psyr_1599 0.69 -0.4
1,799,124 + Psyr_1599 0.70 -0.4
1,799,124 + Psyr_1599 0.70 -0.2
1,799,125 - Psyr_1599 0.70 -0.3
1,799,125 - Psyr_1599 0.70 -0.7
1,799,126 + Psyr_1599 0.71 +0.2
1,799,286 + Psyr_1599 0.78 +0.5
1,799,372 + Psyr_1599 0.82 -0.6
1,799,372 + Psyr_1599 0.82 +0.9
1,799,372 + Psyr_1599 0.82 +0.1
1,799,372 + Psyr_1599 0.82 -0.2
1,799,373 - Psyr_1599 0.82 -0.2
1,799,373 - Psyr_1599 0.82 +0.0
1,799,373 - Psyr_1599 0.82 -1.6
1,799,468 + Psyr_1599 0.87 +0.4
1,799,468 + Psyr_1599 0.87 -0.2
1,799,468 + Psyr_1599 0.87 +1.4
1,799,468 + Psyr_1599 0.87 +1.8
1,799,498 + Psyr_1599 0.88 +1.0
1,799,498 + Psyr_1599 0.88 -2.0
1,799,498 + Psyr_1599 0.88 -0.5
1,799,498 + Psyr_1599 0.88 -0.2
1,799,498 + Psyr_1599 0.88 -0.5
1,799,498 + Psyr_1599 0.88 -0.7
1,799,498 + Psyr_1599 0.88 +1.2
1,799,498 + Psyr_1599 0.88 -0.6
1,799,498 + Psyr_1599 0.88 +0.9
1,799,499 - Psyr_1599 0.88 -1.7
1,799,499 - Psyr_1599 0.88 -1.2
1,799,499 - Psyr_1599 0.88 +0.3
1,799,499 - Psyr_1599 0.88 -0.2
1,799,499 - Psyr_1599 0.88 -1.1
1,799,499 - Psyr_1599 0.88 +0.5
1,799,499 - Psyr_1599 0.88 -0.8
1,799,499 - Psyr_1599 0.88 -0.8
1,799,507 + Psyr_1599 0.89 -2.0
1,799,507 + Psyr_1599 0.89 +0.4
1,799,507 + Psyr_1599 0.89 +0.8
1,799,508 - Psyr_1599 0.89 +0.2
1,799,512 - Psyr_1599 0.89 -0.5
1,799,549 + +0.8
1,799,549 + +0.4
1,799,549 + -0.2
1,799,550 - +0.1
1,799,643 + -1.1
1,799,644 - -1.7
1,799,704 + -0.2
1,799,705 - -0.3
1,799,705 - -0.8
1,799,748 + +1.6
1,799,749 - -0.1
1,799,749 - +0.5
1,799,749 - +0.8
1,799,752 - -2.9
1,799,842 + +0.5
1,799,842 + +0.2
1,799,930 + +1.8
1,799,930 + +0.2
1,799,930 + -0.6
1,799,931 - +1.3
1,799,931 - -0.1
1,799,934 + +0.4
1,799,934 + -1.7
1,799,935 - -0.6
1,799,935 - +0.0
1,799,935 - -0.7
1,799,935 - +0.2
1,799,976 - Psyr_1600 0.13 -0.2
1,799,992 + Psyr_1600 0.14 +1.0
1,799,992 + Psyr_1600 0.14 +1.2
1,800,208 + Psyr_1600 0.37 -2.2
1,800,208 + Psyr_1600 0.37 -0.8
1,800,208 + Psyr_1600 0.37 +1.9
1,800,373 + Psyr_1600 0.54 -1.9
1,800,374 - Psyr_1600 0.54 +0.3
1,800,481 + Psyr_1600 0.65 +1.0
1,800,497 + Psyr_1600 0.67 +1.1
1,800,498 - Psyr_1600 0.67 -1.6
1,800,498 - Psyr_1600 0.67 +0.8

Or see this region's nucleotide sequence