Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1593

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1591 and Psyr_1592 are separated by 32 nucleotidesPsyr_1592 and Psyr_1593 are separated by 247 nucleotidesPsyr_1593 and Psyr_1594 are separated by 206 nucleotides Psyr_1591: Psyr_1591 - Glyoxalase/bleomycin resistance protein/dioxygenase, at 1,790,517 to 1,790,909 _1591 Psyr_1592: Psyr_1592 - conserved hypothetical protein, at 1,790,942 to 1,791,460 _1592 Psyr_1593: Psyr_1593 - conserved hypothetical protein, at 1,791,708 to 1,793,117 _1593 Psyr_1594: Psyr_1594 - FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type, at 1,793,324 to 1,794,094 _1594 Position (kb) 1791 1792 1793 1794Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.907 kb on + strandat 1790.908 kb on - strandat 1790.908 kb on - strandat 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.357 kb on + strand, within Psyr_1592at 1791.358 kb on - strand, within Psyr_1592at 1791.461 kb on - strandat 1791.584 kb on - strandat 1791.589 kb on + strandat 1791.590 kb on - strandat 1791.619 kb on + strandat 1791.619 kb on + strandat 1791.619 kb on + strandat 1791.624 kb on - strandat 1791.624 kb on - strandat 1791.624 kb on - strandat 1791.631 kb on + strandat 1791.631 kb on + strandat 1791.631 kb on + strandat 1791.632 kb on - strandat 1791.632 kb on - strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.807 kb on + strandat 1791.878 kb on + strand, within Psyr_1593at 1791.878 kb on + strand, within Psyr_1593at 1791.878 kb on + strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.963 kb on + strand, within Psyr_1593at 1791.963 kb on + strand, within Psyr_1593at 1792.003 kb on - strand, within Psyr_1593at 1792.003 kb on - strand, within Psyr_1593at 1792.003 kb on - strand, within Psyr_1593at 1792.065 kb on + strand, within Psyr_1593at 1792.095 kb on + strand, within Psyr_1593at 1792.095 kb on + strand, within Psyr_1593at 1792.095 kb on + strand, within Psyr_1593at 1792.095 kb on + strand, within Psyr_1593at 1792.095 kb on + strand, within Psyr_1593at 1792.096 kb on - strand, within Psyr_1593at 1792.096 kb on - strand, within Psyr_1593at 1792.096 kb on - strand, within Psyr_1593at 1792.096 kb on - strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.139 kb on - strand, within Psyr_1593at 1792.167 kb on + strand, within Psyr_1593at 1792.167 kb on + strand, within Psyr_1593at 1792.168 kb on - strand, within Psyr_1593at 1792.168 kb on - strand, within Psyr_1593at 1792.419 kb on - strand, within Psyr_1593at 1792.419 kb on - strand, within Psyr_1593at 1792.544 kb on + strand, within Psyr_1593at 1792.638 kb on + strand, within Psyr_1593at 1792.638 kb on + strand, within Psyr_1593at 1792.638 kb on + strand, within Psyr_1593at 1792.638 kb on + strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.671 kb on + strand, within Psyr_1593at 1792.671 kb on + strand, within Psyr_1593at 1792.675 kb on - strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.875 kb on + strand, within Psyr_1593at 1792.875 kb on + strand, within Psyr_1593at 1792.876 kb on - strand, within Psyr_1593at 1792.876 kb on - strand, within Psyr_1593at 1792.909 kb on - strand, within Psyr_1593at 1792.909 kb on - strand, within Psyr_1593at 1792.909 kb on - strand, within Psyr_1593at 1792.909 kb on - strand, within Psyr_1593at 1792.965 kb on + strand, within Psyr_1593at 1792.966 kb on - strand, within Psyr_1593at 1792.966 kb on - strand, within Psyr_1593at 1793.271 kb on + strandat 1793.321 kb on - strandat 1793.435 kb on + strand, within Psyr_1594at 1793.435 kb on + strand, within Psyr_1594at 1793.435 kb on + strand, within Psyr_1594at 1793.436 kb on - strand, within Psyr_1594at 1793.479 kb on + strand, within Psyr_1594at 1793.479 kb on + strand, within Psyr_1594at 1793.506 kb on - strand, within Psyr_1594at 1793.506 kb on - strand, within Psyr_1594at 1793.668 kb on + strand, within Psyr_1594at 1793.709 kb on - strand, within Psyr_1594at 1793.750 kb on - strand, within Psyr_1594at 1794.092 kb on + strandat 1794.092 kb on + strandat 1794.093 kb on - strandat 1794.093 kb on - strandat 1794.093 kb on - strandat 1794.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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1,790,844 + Psyr_1591 0.83 +1.0
1,790,844 + Psyr_1591 0.83 +1.3
1,790,844 + Psyr_1591 0.83 -0.0
1,790,844 + Psyr_1591 0.83 +0.8
1,790,844 + Psyr_1591 0.83 +1.8
1,790,844 + Psyr_1591 0.83 +0.0
1,790,845 - Psyr_1591 0.83 -0.2
1,790,845 - Psyr_1591 0.83 -0.8
1,790,845 - Psyr_1591 0.83 +0.4
1,790,845 - Psyr_1591 0.83 -0.3
1,790,845 - Psyr_1591 0.83 +0.1
1,790,845 - Psyr_1591 0.83 +0.8
1,790,845 - Psyr_1591 0.83 -0.3
1,790,907 + +0.8
1,790,908 - +0.6
1,790,908 - +0.5
1,791,012 + Psyr_1592 0.13 -1.4
1,791,012 + Psyr_1592 0.13 -0.6
1,791,012 + Psyr_1592 0.13 +1.1
1,791,012 + Psyr_1592 0.13 +0.2
1,791,012 + Psyr_1592 0.13 +0.8
1,791,012 + Psyr_1592 0.13 -1.3
1,791,012 + Psyr_1592 0.13 -0.5
1,791,012 + Psyr_1592 0.13 -1.8
1,791,012 + Psyr_1592 0.13 -0.7
1,791,012 + Psyr_1592 0.13 -0.6
1,791,012 + Psyr_1592 0.13 +0.6
1,791,012 + Psyr_1592 0.13 +0.3
1,791,012 + Psyr_1592 0.13 -1.1
1,791,012 + Psyr_1592 0.13 +0.5
1,791,013 - Psyr_1592 0.14 +0.1
1,791,013 - Psyr_1592 0.14 +0.0
1,791,013 - Psyr_1592 0.14 -0.4
1,791,013 - Psyr_1592 0.14 +0.1
1,791,013 - Psyr_1592 0.14 -0.2
1,791,013 - Psyr_1592 0.14 -2.0
1,791,013 - Psyr_1592 0.14 -0.6
1,791,013 - Psyr_1592 0.14 +1.8
1,791,013 - Psyr_1592 0.14 +0.2
1,791,013 - Psyr_1592 0.14 -0.4
1,791,013 - Psyr_1592 0.14 +0.3
1,791,013 - Psyr_1592 0.14 +0.6
1,791,013 - Psyr_1592 0.14 -0.5
1,791,013 - Psyr_1592 0.14 +0.1
1,791,013 - Psyr_1592 0.14 +0.4
1,791,013 - Psyr_1592 0.14 +0.1
1,791,086 + Psyr_1592 0.28 -1.6
1,791,086 + Psyr_1592 0.28 +0.1
1,791,086 + Psyr_1592 0.28 +0.8
1,791,086 + Psyr_1592 0.28 -0.3
1,791,087 - Psyr_1592 0.28 -0.1
1,791,087 - Psyr_1592 0.28 +0.6
1,791,087 - Psyr_1592 0.28 +0.2
1,791,087 - Psyr_1592 0.28 -0.0
1,791,087 - Psyr_1592 0.28 -0.1
1,791,087 - Psyr_1592 0.28 +0.5
1,791,162 + Psyr_1592 0.42 -0.8
1,791,162 + Psyr_1592 0.42 -2.8
1,791,162 + Psyr_1592 0.42 -0.4
1,791,163 - Psyr_1592 0.43 -0.7
1,791,163 - Psyr_1592 0.43 -0.6
1,791,357 + Psyr_1592 0.80 +0.5
1,791,358 - Psyr_1592 0.80 +1.3
1,791,461 - +0.1
1,791,584 - +0.3
1,791,589 + +0.2
1,791,590 - -1.6
1,791,619 + +0.5
1,791,619 + +0.5
1,791,619 + -0.4
1,791,624 - -1.0
1,791,624 - -0.5
1,791,624 - -0.6
1,791,631 + +0.1
1,791,631 + -0.4
1,791,631 + +0.2
1,791,632 - +2.0
1,791,632 - +0.2
1,791,639 + +1.8
1,791,639 + -0.6
1,791,639 + -0.1
1,791,639 + +1.1
1,791,639 + +1.8
1,791,639 + +1.2
1,791,640 - -0.7
1,791,640 - +0.2
1,791,640 - +0.3
1,791,640 - -1.2
1,791,640 - -0.6
1,791,640 - -0.9
1,791,640 - +0.4
1,791,640 - +0.4
1,791,807 + -0.6
1,791,878 + Psyr_1593 0.12 +1.4
1,791,878 + Psyr_1593 0.12 -0.0
1,791,878 + Psyr_1593 0.12 +0.3
1,791,879 - Psyr_1593 0.12 +0.2
1,791,879 - Psyr_1593 0.12 +0.6
1,791,879 - Psyr_1593 0.12 -1.1
1,791,879 - Psyr_1593 0.12 -2.3
1,791,882 + Psyr_1593 0.12 +1.3
1,791,882 + Psyr_1593 0.12 -0.4
1,791,882 + Psyr_1593 0.12 -2.0
1,791,882 + Psyr_1593 0.12 -0.4
1,791,882 + Psyr_1593 0.12 -0.2
1,791,882 + Psyr_1593 0.12 +0.6
1,791,882 + Psyr_1593 0.12 -0.6
1,791,883 - Psyr_1593 0.12 -1.6
1,791,883 - Psyr_1593 0.12 +1.5
1,791,883 - Psyr_1593 0.12 +0.8
1,791,883 - Psyr_1593 0.12 -0.3
1,791,883 - Psyr_1593 0.12 +1.0
1,791,883 - Psyr_1593 0.12 +0.8
1,791,963 + Psyr_1593 0.18 -1.7
1,791,963 + Psyr_1593 0.18 -0.4
1,792,003 - Psyr_1593 0.21 -0.4
1,792,003 - Psyr_1593 0.21 -0.7
1,792,003 - Psyr_1593 0.21 +0.8
1,792,065 + Psyr_1593 0.25 -0.5
1,792,095 + Psyr_1593 0.27 -0.7
1,792,095 + Psyr_1593 0.27 -0.1
1,792,095 + Psyr_1593 0.27 -0.1
1,792,095 + Psyr_1593 0.27 +0.9
1,792,095 + Psyr_1593 0.27 -0.2
1,792,096 - Psyr_1593 0.28 -1.1
1,792,096 - Psyr_1593 0.28 -0.7
1,792,096 - Psyr_1593 0.28 +0.3
1,792,096 - Psyr_1593 0.28 -0.3
1,792,134 + Psyr_1593 0.30 -0.5
1,792,134 + Psyr_1593 0.30 +1.7
1,792,134 + Psyr_1593 0.30 -1.0
1,792,134 + Psyr_1593 0.30 +1.6
1,792,134 + Psyr_1593 0.30 +1.8
1,792,135 - Psyr_1593 0.30 -0.7
1,792,135 - Psyr_1593 0.30 -0.6
1,792,135 - Psyr_1593 0.30 -0.6
1,792,135 - Psyr_1593 0.30 -0.2
1,792,135 - Psyr_1593 0.30 -0.4
1,792,135 - Psyr_1593 0.30 +0.4
1,792,135 - Psyr_1593 0.30 +0.8
1,792,135 - Psyr_1593 0.30 -0.2
1,792,135 - Psyr_1593 0.30 -0.0
1,792,135 - Psyr_1593 0.30 -0.2
1,792,135 - Psyr_1593 0.30 -0.2
1,792,135 - Psyr_1593 0.30 -1.2
1,792,139 - Psyr_1593 0.31 -0.8
1,792,167 + Psyr_1593 0.33 +0.0
1,792,167 + Psyr_1593 0.33 +0.3
1,792,168 - Psyr_1593 0.33 +1.8
1,792,168 - Psyr_1593 0.33 -0.8
1,792,419 - Psyr_1593 0.50 -1.1
1,792,419 - Psyr_1593 0.50 -1.1
1,792,544 + Psyr_1593 0.59 -0.5
1,792,638 + Psyr_1593 0.66 -0.4
1,792,638 + Psyr_1593 0.66 -1.2
1,792,638 + Psyr_1593 0.66 -0.8
1,792,638 + Psyr_1593 0.66 -0.5
1,792,639 - Psyr_1593 0.66 +0.2
1,792,639 - Psyr_1593 0.66 +0.0
1,792,639 - Psyr_1593 0.66 +0.3
1,792,639 - Psyr_1593 0.66 -0.8
1,792,639 - Psyr_1593 0.66 +0.9
1,792,671 + Psyr_1593 0.68 +0.3
1,792,671 + Psyr_1593 0.68 +0.8
1,792,675 - Psyr_1593 0.69 -0.5
1,792,716 + Psyr_1593 0.71 -0.8
1,792,716 + Psyr_1593 0.71 -1.8
1,792,716 + Psyr_1593 0.71 +0.3
1,792,716 + Psyr_1593 0.71 -0.7
1,792,716 + Psyr_1593 0.71 -0.3
1,792,716 + Psyr_1593 0.71 -0.3
1,792,716 + Psyr_1593 0.71 -0.1
1,792,716 + Psyr_1593 0.71 -0.8
1,792,716 + Psyr_1593 0.71 -0.2
1,792,717 - Psyr_1593 0.72 +1.1
1,792,717 - Psyr_1593 0.72 -0.1
1,792,717 - Psyr_1593 0.72 +0.0
1,792,717 - Psyr_1593 0.72 +0.2
1,792,717 - Psyr_1593 0.72 +1.6
1,792,717 - Psyr_1593 0.72 -1.5
1,792,717 - Psyr_1593 0.72 +0.3
1,792,717 - Psyr_1593 0.72 -0.7
1,792,717 - Psyr_1593 0.72 -1.1
1,792,717 - Psyr_1593 0.72 -0.2
1,792,717 - Psyr_1593 0.72 -0.8
1,792,875 + Psyr_1593 0.83 -0.2
1,792,875 + Psyr_1593 0.83 +0.8
1,792,876 - Psyr_1593 0.83 +0.3
1,792,876 - Psyr_1593 0.83 -0.2
1,792,909 - Psyr_1593 0.85 +0.2
1,792,909 - Psyr_1593 0.85 -1.2
1,792,909 - Psyr_1593 0.85 -1.6
1,792,909 - Psyr_1593 0.85 -0.2
1,792,965 + Psyr_1593 0.89 -0.2
1,792,966 - Psyr_1593 0.89 -0.6
1,792,966 - Psyr_1593 0.89 -0.8
1,793,271 + +1.7
1,793,321 - -0.4
1,793,435 + Psyr_1594 0.14 -1.2
1,793,435 + Psyr_1594 0.14 +0.2
1,793,435 + Psyr_1594 0.14 -0.1
1,793,436 - Psyr_1594 0.15 +0.4
1,793,479 + Psyr_1594 0.20 +0.0
1,793,479 + Psyr_1594 0.20 +0.8
1,793,506 - Psyr_1594 0.24 +0.8
1,793,506 - Psyr_1594 0.24 -0.1
1,793,668 + Psyr_1594 0.45 +0.6
1,793,709 - Psyr_1594 0.50 -2.8
1,793,750 - Psyr_1594 0.55 -0.1
1,794,092 + +0.1
1,794,092 + +0.4
1,794,093 - +0.1
1,794,093 - -1.2
1,794,093 - +1.8
1,794,093 - +1.8

Or see this region's nucleotide sequence