Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1591

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1590 and Psyr_1591 are separated by 55 nucleotidesPsyr_1591 and Psyr_1592 are separated by 32 nucleotidesPsyr_1592 and Psyr_1593 are separated by 247 nucleotides Psyr_1590: Psyr_1590 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,789,271 to 1,790,461 _1590 Psyr_1591: Psyr_1591 - Glyoxalase/bleomycin resistance protein/dioxygenase, at 1,790,517 to 1,790,909 _1591 Psyr_1592: Psyr_1592 - conserved hypothetical protein, at 1,790,942 to 1,791,460 _1592 Psyr_1593: Psyr_1593 - conserved hypothetical protein, at 1,791,708 to 1,793,117 _1593 Position (kb) 1790 1791Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.543 kb on - strand, within Psyr_1590at 1789.543 kb on - strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strandat 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.871 kb on + strand, within Psyr_1590at 1789.871 kb on + strand, within Psyr_1590at 1789.871 kb on + strand, within Psyr_1590at 1789.872 kb on - strand, within Psyr_1590at 1789.872 kb on - strand, within Psyr_1590at 1789.872 kb on - strand, within Psyr_1590at 1790.003 kb on + strand, within Psyr_1590at 1790.004 kb on - strand, within Psyr_1590at 1790.032 kb on + strand, within Psyr_1590at 1790.033 kb on - strand, within Psyr_1590at 1790.033 kb on - strand, within Psyr_1590at 1790.204 kb on - strand, within Psyr_1590at 1790.222 kb on + strand, within Psyr_1590at 1790.255 kb on + strand, within Psyr_1590at 1790.320 kb on + strand, within Psyr_1590at 1790.320 kb on + strand, within Psyr_1590at 1790.356 kb on - strandat 1790.356 kb on - strandat 1790.455 kb on + strandat 1790.496 kb on - strandat 1790.542 kb on + strandat 1790.542 kb on + strandat 1790.580 kb on + strand, within Psyr_1591at 1790.580 kb on + strand, within Psyr_1591at 1790.584 kb on + strand, within Psyr_1591at 1790.584 kb on + strand, within Psyr_1591at 1790.585 kb on - strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.907 kb on + strandat 1790.908 kb on - strandat 1790.908 kb on - strandat 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.357 kb on + strand, within Psyr_1592at 1791.358 kb on - strand, within Psyr_1592at 1791.461 kb on - strandat 1791.584 kb on - strandat 1791.589 kb on + strandat 1791.590 kb on - strandat 1791.619 kb on + strandat 1791.619 kb on + strandat 1791.619 kb on + strandat 1791.624 kb on - strandat 1791.624 kb on - strandat 1791.624 kb on - strandat 1791.631 kb on + strandat 1791.631 kb on + strandat 1791.631 kb on + strandat 1791.632 kb on - strandat 1791.632 kb on - strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.807 kb on + strandat 1791.878 kb on + strand, within Psyr_1593at 1791.878 kb on + strand, within Psyr_1593at 1791.878 kb on + strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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1,789,542 + Psyr_1590 0.23 +1.0
1,789,542 + Psyr_1590 0.23 +0.5
1,789,542 + Psyr_1590 0.23 -0.7
1,789,542 + Psyr_1590 0.23 -0.7
1,789,542 + Psyr_1590 0.23 -0.2
1,789,542 + Psyr_1590 0.23 -0.8
1,789,542 + Psyr_1590 0.23 -0.1
1,789,542 + Psyr_1590 0.23 +0.3
1,789,543 - Psyr_1590 0.23 +0.1
1,789,543 - Psyr_1590 0.23 +0.1
1,789,857 + Psyr_1590 0.49 +0.1
1,789,857 + Psyr_1590 0.49 -0.7
1,789,857 + +0.2
1,789,857 + Psyr_1590 0.49 -1.8
1,789,857 + Psyr_1590 0.49 -1.3
1,789,857 + Psyr_1590 0.49 -0.5
1,789,857 + Psyr_1590 0.49 -1.6
1,789,857 + Psyr_1590 0.49 -0.0
1,789,857 + Psyr_1590 0.49 -0.5
1,789,857 + Psyr_1590 0.49 -1.0
1,789,857 + Psyr_1590 0.49 +0.0
1,789,857 + Psyr_1590 0.49 +0.4
1,789,858 - Psyr_1590 0.49 -0.0
1,789,858 - Psyr_1590 0.49 -1.0
1,789,858 - Psyr_1590 0.49 +0.2
1,789,858 - Psyr_1590 0.49 -0.2
1,789,858 - Psyr_1590 0.49 +0.0
1,789,858 - Psyr_1590 0.49 -0.5
1,789,858 - Psyr_1590 0.49 -2.8
1,789,858 - Psyr_1590 0.49 +1.0
1,789,871 + Psyr_1590 0.50 -0.2
1,789,871 + Psyr_1590 0.50 -0.2
1,789,871 + Psyr_1590 0.50 +0.0
1,789,872 - Psyr_1590 0.50 +0.2
1,789,872 - Psyr_1590 0.50 -1.2
1,789,872 - Psyr_1590 0.50 -0.8
1,790,003 + Psyr_1590 0.61 +2.9
1,790,004 - Psyr_1590 0.62 -0.9
1,790,032 + Psyr_1590 0.64 +0.0
1,790,033 - Psyr_1590 0.64 +0.9
1,790,033 - Psyr_1590 0.64 -1.8
1,790,204 - Psyr_1590 0.78 +0.8
1,790,222 + Psyr_1590 0.80 +1.1
1,790,255 + Psyr_1590 0.83 -0.2
1,790,320 + Psyr_1590 0.88 +0.8
1,790,320 + Psyr_1590 0.88 -0.4
1,790,356 - +1.0
1,790,356 - -2.9
1,790,455 + +1.2
1,790,496 - +1.8
1,790,542 + +0.6
1,790,542 + +1.0
1,790,580 + Psyr_1591 0.16 -0.5
1,790,580 + Psyr_1591 0.16 -1.2
1,790,584 + Psyr_1591 0.17 +0.2
1,790,584 + Psyr_1591 0.17 -0.4
1,790,585 - Psyr_1591 0.17 -0.1
1,790,844 + Psyr_1591 0.83 +1.0
1,790,844 + Psyr_1591 0.83 +1.3
1,790,844 + Psyr_1591 0.83 -0.0
1,790,844 + Psyr_1591 0.83 +0.8
1,790,844 + Psyr_1591 0.83 +1.8
1,790,844 + Psyr_1591 0.83 +0.0
1,790,845 - Psyr_1591 0.83 -0.2
1,790,845 - Psyr_1591 0.83 -0.8
1,790,845 - Psyr_1591 0.83 +0.4
1,790,845 - Psyr_1591 0.83 -0.3
1,790,845 - Psyr_1591 0.83 +0.1
1,790,845 - Psyr_1591 0.83 +0.8
1,790,845 - Psyr_1591 0.83 -0.3
1,790,907 + +0.8
1,790,908 - +0.6
1,790,908 - +0.5
1,791,012 + Psyr_1592 0.13 -1.4
1,791,012 + Psyr_1592 0.13 -0.6
1,791,012 + Psyr_1592 0.13 +1.1
1,791,012 + Psyr_1592 0.13 +0.2
1,791,012 + Psyr_1592 0.13 +0.8
1,791,012 + Psyr_1592 0.13 -1.3
1,791,012 + Psyr_1592 0.13 -0.5
1,791,012 + Psyr_1592 0.13 -1.8
1,791,012 + Psyr_1592 0.13 -0.7
1,791,012 + Psyr_1592 0.13 -0.6
1,791,012 + Psyr_1592 0.13 +0.6
1,791,012 + Psyr_1592 0.13 +0.3
1,791,012 + Psyr_1592 0.13 -1.1
1,791,012 + Psyr_1592 0.13 +0.5
1,791,013 - Psyr_1592 0.14 +0.1
1,791,013 - Psyr_1592 0.14 +0.0
1,791,013 - Psyr_1592 0.14 -0.4
1,791,013 - Psyr_1592 0.14 +0.1
1,791,013 - Psyr_1592 0.14 -0.2
1,791,013 - Psyr_1592 0.14 -2.0
1,791,013 - Psyr_1592 0.14 -0.6
1,791,013 - Psyr_1592 0.14 +1.8
1,791,013 - Psyr_1592 0.14 +0.2
1,791,013 - Psyr_1592 0.14 -0.4
1,791,013 - Psyr_1592 0.14 +0.3
1,791,013 - Psyr_1592 0.14 +0.6
1,791,013 - Psyr_1592 0.14 -0.5
1,791,013 - Psyr_1592 0.14 +0.1
1,791,013 - Psyr_1592 0.14 +0.4
1,791,013 - Psyr_1592 0.14 +0.1
1,791,086 + Psyr_1592 0.28 -1.6
1,791,086 + Psyr_1592 0.28 +0.1
1,791,086 + Psyr_1592 0.28 +0.8
1,791,086 + Psyr_1592 0.28 -0.3
1,791,087 - Psyr_1592 0.28 -0.1
1,791,087 - Psyr_1592 0.28 +0.6
1,791,087 - Psyr_1592 0.28 +0.2
1,791,087 - Psyr_1592 0.28 -0.0
1,791,087 - Psyr_1592 0.28 -0.1
1,791,087 - Psyr_1592 0.28 +0.5
1,791,162 + Psyr_1592 0.42 -0.8
1,791,162 + Psyr_1592 0.42 -2.8
1,791,162 + Psyr_1592 0.42 -0.4
1,791,163 - Psyr_1592 0.43 -0.7
1,791,163 - Psyr_1592 0.43 -0.6
1,791,357 + Psyr_1592 0.80 +0.5
1,791,358 - Psyr_1592 0.80 +1.3
1,791,461 - +0.1
1,791,584 - +0.3
1,791,589 + +0.2
1,791,590 - -1.6
1,791,619 + +0.5
1,791,619 + +0.5
1,791,619 + -0.4
1,791,624 - -1.0
1,791,624 - -0.5
1,791,624 - -0.6
1,791,631 + +0.1
1,791,631 + -0.4
1,791,631 + +0.2
1,791,632 - +2.0
1,791,632 - +0.2
1,791,639 + +1.8
1,791,639 + -0.6
1,791,639 + -0.1
1,791,639 + +1.1
1,791,639 + +1.8
1,791,639 + +1.2
1,791,640 - -0.7
1,791,640 - +0.2
1,791,640 - +0.3
1,791,640 - -1.2
1,791,640 - -0.6
1,791,640 - -0.9
1,791,640 - +0.4
1,791,640 - +0.4
1,791,807 + -0.6
1,791,878 + Psyr_1593 0.12 +1.4
1,791,878 + Psyr_1593 0.12 -0.0
1,791,878 + Psyr_1593 0.12 +0.3
1,791,879 - Psyr_1593 0.12 +0.2
1,791,879 - Psyr_1593 0.12 +0.6
1,791,879 - Psyr_1593 0.12 -1.1
1,791,879 - Psyr_1593 0.12 -2.3
1,791,882 + Psyr_1593 0.12 +1.3
1,791,882 + Psyr_1593 0.12 -0.4
1,791,882 + Psyr_1593 0.12 -2.0
1,791,882 + Psyr_1593 0.12 -0.4
1,791,882 + Psyr_1593 0.12 -0.2
1,791,882 + Psyr_1593 0.12 +0.6
1,791,882 + Psyr_1593 0.12 -0.6
1,791,883 - Psyr_1593 0.12 -1.6
1,791,883 - Psyr_1593 0.12 +1.5
1,791,883 - Psyr_1593 0.12 +0.8
1,791,883 - Psyr_1593 0.12 -0.3
1,791,883 - Psyr_1593 0.12 +1.0
1,791,883 - Psyr_1593 0.12 +0.8

Or see this region's nucleotide sequence