Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1463

Experiment: KB with Nitrofurantoin 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 125 ug/ml
1,648,830	+		Psyr_1461	0.83	-1.2
1,648,831	-		Psyr_1461	0.83	-1.0
1,648,848	+		Psyr_1461	0.84	+0.8
1,648,931	-				+0.0
1,648,999	+				-0.5
1,649,010	-				-0.8
1,649,014	-				-0.9
1,649,025	+				+0.9
1,649,066	-				-2.7
1,649,077	+				+1.3
1,649,077	+				-1.0
1,649,092	+				+0.7
1,649,096	+				+1.2
1,649,102	+				+0.3
1,649,102	+				-0.8
1,649,102	+				+1.8
1,649,103	-				-1.8
1,649,174	-		Psyr_1462	0.19	-3.1
1,649,174	-		Psyr_1462	0.19	-2.2
1,649,199	+		Psyr_1462	0.24	-1.2
1,649,223	-		Psyr_1462	0.28	-0.1
1,649,226	-		Psyr_1462	0.29	-2.3
1,649,226	-		Psyr_1462	0.29	-2.8
1,649,226	-		Psyr_1462	0.29	-0.6
1,649,275	+		Psyr_1462	0.38	+0.0
1,649,327	+		Psyr_1462	0.48	-0.4
1,649,334	+		Psyr_1462	0.49	+0.2
1,649,361	+		Psyr_1462	0.54	+1.2
1,649,361	+		Psyr_1462	0.54	+0.9
1,649,361	+		Psyr_1462	0.54	-1.4
1,649,361	+		Psyr_1462	0.54	-3.0
1,649,372	+		Psyr_1462	0.56	+1.2
1,649,459	-		Psyr_1462	0.72	-0.2
1,649,485	-		Psyr_1462	0.77	-1.6
1,649,548	-		Psyr_1462	0.89	+1.1
1,649,549	+		Psyr_1462	0.89	-1.6
1,649,549	+		Psyr_1462	0.89	+1.1
1,649,563	+				+0.2
1,649,654	+				-0.7
1,649,654	+				+0.6
1,649,654	+				-1.0
1,649,654	+				+0.0
1,649,654	+				+1.8
1,649,661	+				+0.7
1,649,661	+				+0.6
1,649,661	+				-0.6
1,649,661	+				+0.4
1,649,662	-				-2.0
1,649,665	+				-0.9
1,649,665	+				-0.2
1,649,665	+				-1.0
1,649,665	+				+0.4
1,649,666	-				-1.4
1,649,666	-				+0.3
1,649,717	+				+0.1
1,649,717	+				-0.2
1,649,718	-				+0.0
1,649,718	-				-1.1
1,649,718	-				-2.2
1,649,718	-				-0.2
1,649,721	+				+0.0
1,649,721	+				+0.4
1,649,721	+				+0.1
1,649,721	+				+1.0
1,649,721	+				+0.6
1,649,721	+				+1.1
1,649,721	+				+0.5
1,649,721	+				-0.2
1,649,721	+				-1.0
1,649,721	+				+0.2
1,649,721	+				-1.0
1,649,721	+				+1.1
1,649,721	+				-0.2
1,649,721	+				+0.2
1,649,721	+				-0.4
1,649,721	+				-0.2
1,649,722	-				+0.1
1,649,722	-				+0.5
1,649,722	-				-0.2
1,649,722	-				-2.7
1,649,722	-				-2.3
1,649,722	-				+1.0
1,649,722	-				+0.2
1,649,722	-				-0.2
1,649,722	-				-0.8
1,649,722	-				-1.8
1,649,722	-				-2.7
1,649,722	-				-0.2
1,649,722	-				+0.9
1,649,722	-				-0.0
1,649,722	-				-1.0
1,649,722	-				-0.8
1,649,722	-				-0.6
1,649,722	-				-1.8
1,649,722	-				-0.3
1,649,722	-				-0.7
1,649,722	-				-1.2
1,649,723	+				+1.8
1,649,723	+				+1.3
1,649,723	+				-0.7
1,649,723	+				+0.3
1,649,723	+				-1.8
1,649,723	+				+0.4
1,649,723	+				-0.8
1,649,723	+				+0.9
1,649,724	-				+1.0
1,649,724	-				-0.2
1,649,724	-				-0.8
1,649,724	-				-1.4
1,649,724	-				-1.1
1,649,724	-				-0.9
1,649,724	-				-1.2
1,649,724	-				-0.0
1,649,725	+				+2.3
1,649,745	-				-0.6
1,649,781	+				-0.6
1,649,988	+				+0.1
1,649,988	+				+1.1
1,650,063	+		Psyr_1463	0.10	-0.6
1,650,063	+		Psyr_1463	0.10	-0.5
1,650,064	-		Psyr_1463	0.10	-1.4
1,650,072	+		Psyr_1463	0.11	-0.8
1,650,072	+		Psyr_1463	0.11	+0.6
1,650,073	-		Psyr_1463	0.11	-2.0
1,650,073	-		Psyr_1463	0.11	-0.2
1,650,073	-		Psyr_1463	0.11	-0.2
1,650,152	+		Psyr_1463	0.14	+0.6
1,650,152	+		Psyr_1463	0.14	+0.8
1,650,153	-		Psyr_1463	0.14	+1.3
1,650,153	-		Psyr_1463	0.14	-0.8
1,650,294	+		Psyr_1463	0.21	-2.4
1,650,295	-		Psyr_1463	0.21	-0.5
1,650,344	+		Psyr_1463	0.23	+0.2
1,650,344	+		Psyr_1463	0.23	+0.1
1,650,344	+		Psyr_1463	0.23	-0.3
1,650,344	+		Psyr_1463	0.23	+0.2
1,650,344	+		Psyr_1463	0.23	-1.5
1,650,344	+		Psyr_1463	0.23	+0.1
1,650,344	+		Psyr_1463	0.23	-1.6
1,650,344	+		Psyr_1463	0.23	-0.6
1,650,344	+		Psyr_1463	0.23	+0.7
1,650,344	+		Psyr_1463	0.23	-0.1
1,650,344	+		Psyr_1463	0.23	-0.0
1,650,344	+		Psyr_1463	0.23	-2.4
1,650,344	+		Psyr_1463	0.23	+0.8
1,650,344	+		Psyr_1463	0.23	-2.0
1,650,344	+		Psyr_1463	0.23	-0.3
1,650,345	-		Psyr_1463	0.23	+2.3
1,650,345	-		Psyr_1463	0.23	-0.0
1,650,345	-		Psyr_1463	0.23	+0.6
1,650,345	-		Psyr_1463	0.23	-2.4
1,650,345	-		Psyr_1463	0.23	-0.6
1,650,345	-		Psyr_1463	0.23	+0.4
1,650,345	-		Psyr_1463	0.23	+0.3
1,650,437	+		Psyr_1463	0.27	+0.0
1,650,437	+		Psyr_1463	0.27	-3.0
1,650,438	-		Psyr_1463	0.27	-0.7
1,650,508	+		Psyr_1463	0.30	+0.0
1,650,509	-		Psyr_1463	0.30	-1.4
1,650,509	-		Psyr_1463	0.30	+0.5
1,650,509	-		Psyr_1463	0.30	+0.5
1,650,596	+		Psyr_1463	0.34	+1.0
1,650,596	+		Psyr_1463	0.34	+0.4
1,650,597	-		Psyr_1463	0.34	-1.6
1,650,627	-		Psyr_1463	0.35	-0.5
1,650,627	-		Psyr_1463	0.35	+1.9
1,650,674	+		Psyr_1463	0.37	-1.4
1,650,674	+		Psyr_1463	0.37	-0.7
1,650,675	-		Psyr_1463	0.37	-0.4
1,650,675	-		Psyr_1463	0.37	+0.2
1,650,783	+		Psyr_1463	0.42	-0.6
1,650,783	+		Psyr_1463	0.42	+1.0
1,650,783	+		Psyr_1463	0.42	+0.2
1,650,783	+		Psyr_1463	0.42	+0.4
1,650,783	+		Psyr_1463	0.42	-0.8
1,650,783	+		Psyr_1463	0.42	-1.4
1,650,783	+		Psyr_1463	0.42	+0.2
1,650,783	+		Psyr_1463	0.42	+0.3
1,650,783	+		Psyr_1463	0.42	-0.1
1,650,783	+		Psyr_1463	0.42	-0.4
1,650,783	+		Psyr_1463	0.42	+1.3
1,650,784	-		Psyr_1463	0.42	+0.9
1,650,784	-		Psyr_1463	0.42	+0.8
1,650,784	-		Psyr_1463	0.42	+0.8
1,650,784	-		Psyr_1463	0.42	+0.3
1,650,784	-		Psyr_1463	0.42	-0.2
1,650,784	-		Psyr_1463	0.42	-0.5
1,650,787	+		Psyr_1463	0.42	+0.4
1,650,788	-		Psyr_1463	0.42	-1.4
1,650,788	-		Psyr_1463	0.42	+0.6
1,650,815	-		Psyr_1463	0.44	-1.3
1,650,877	+		Psyr_1463	0.46	-1.0
1,650,877	+		Psyr_1463	0.46	-0.2
1,650,877	+		Psyr_1463	0.46	+0.3
1,650,877	+		Psyr_1463	0.46	+0.8
1,650,877	+		Psyr_1463	0.46	+1.2
1,650,877	+		Psyr_1463	0.46	+0.8
1,650,877	+		Psyr_1463	0.46	-0.9
1,650,878	-		Psyr_1463	0.46	+0.0
1,650,878	-		Psyr_1463	0.46	+1.5
1,650,878	-		Psyr_1463	0.46	+0.2
1,650,878	-		Psyr_1463	0.46	+0.9
1,650,878	-		Psyr_1463	0.46	+0.2
1,650,878	-		Psyr_1463	0.46	-0.1
1,650,878	-		Psyr_1463	0.46	+1.2
1,650,878	-		Psyr_1463	0.46	-1.1
1,650,878	-		Psyr_1463	0.46	+1.6
1,650,878	-		Psyr_1463	0.46	-0.2
1,650,878	-		Psyr_1463	0.46	-0.0
1,650,878	-		Psyr_1463	0.46	-0.1
1,650,902	+		Psyr_1463	0.48	-0.2
1,650,902	+		Psyr_1463	0.48	+0.1
1,650,902	+		Psyr_1463	0.48	-0.4
1,650,902	+		Psyr_1463	0.48	-0.2
1,650,902	+		Psyr_1463	0.48	+0.5
1,650,902	+		Psyr_1463	0.48	+0.5
1,650,902	+		Psyr_1463	0.48	+0.0
1,650,902	+		Psyr_1463	0.48	+1.0
1,650,902	+		Psyr_1463	0.48	-0.1
1,650,902	+		Psyr_1463	0.48	-0.7
1,650,902	+		Psyr_1463	0.48	-0.2
1,650,903	-		Psyr_1463	0.48	-0.8
1,650,903	-		Psyr_1463	0.48	+0.2
1,650,903	-		Psyr_1463	0.48	-0.2
1,650,903	-		Psyr_1463	0.48	+0.8
1,650,906	+		Psyr_1463	0.48	+0.2
1,650,906	+		Psyr_1463	0.48	+0.6
1,650,906	+		Psyr_1463	0.48	-0.9
1,650,906	+		Psyr_1463	0.48	-0.6
1,650,906	+		Psyr_1463	0.48	-0.9
1,650,906	+		Psyr_1463	0.48	+0.4
1,650,907	-		Psyr_1463	0.48	+0.2
1,650,907	-		Psyr_1463	0.48	+0.6
1,650,907	-		Psyr_1463	0.48	+0.3
1,650,907	-		Psyr_1463	0.48	+0.2
1,650,907	-		Psyr_1463	0.48	+0.2
1,650,907	-		Psyr_1463	0.48	-0.4
1,651,020	+		Psyr_1463	0.53	-0.6
1,651,021	-		Psyr_1463	0.53	-0.0
1,651,021	-		Psyr_1463	0.53	+0.5
1,651,021	-		Psyr_1463	0.53	-1.2
1,651,046	+		Psyr_1463	0.54	-2.6
1,651,047	-		Psyr_1463	0.54	+0.3
1,651,047	-		Psyr_1463	0.54	+0.2
1,651,262	+		Psyr_1463	0.63	+0.5
1,651,262	+		Psyr_1463	0.63	+0.1
1,651,262	+		Psyr_1463	0.63	+1.5
1,651,263	-		Psyr_1463	0.64	-1.2
1,651,263	-		Psyr_1463	0.64	+0.4
1,651,263	-		Psyr_1463	0.64	-0.5
1,651,263	-		Psyr_1463	0.64	-0.7
1,651,263	-		Psyr_1463	0.64	-0.6
1,651,294	+		Psyr_1463	0.65	+0.0
1,651,295	-		Psyr_1463	0.65	+0.5
1,651,295	-		Psyr_1463	0.65	-1.2
1,651,295	-		Psyr_1463	0.65	+0.1
1,651,295	-		Psyr_1463	0.65	-0.8
1,651,317	-		Psyr_1463	0.66	-0.2
1,651,328	-		Psyr_1463	0.66	+0.2
1,651,374	-		Psyr_1463	0.68	-0.7
1,651,498	+		Psyr_1463	0.74	+1.2
1,651,573	+		Psyr_1463	0.77	-2.6
1,651,574	-		Psyr_1463	0.77	-0.5
1,651,596	+		Psyr_1463	0.78	-0.7
1,651,597	-		Psyr_1463	0.78	-2.2
1,651,597	-		Psyr_1463	0.78	-0.9
1,651,597	-		Psyr_1463	0.78	+0.3
1,651,597	-		Psyr_1463	0.78	+0.4
1,651,597	-		Psyr_1463	0.78	-0.1
1,651,597	-		Psyr_1463	0.78	-2.0
1,651,600	+		Psyr_1463	0.78	-1.6
1,651,600	+		Psyr_1463	0.78	-0.0
1,651,601	-		Psyr_1463	0.78	-1.2
1,651,601	-		Psyr_1463	0.78	+0.8
1,651,710	+		Psyr_1463	0.83	-1.2
1,651,710	+		Psyr_1463	0.83	-0.9
1,651,710	+		Psyr_1463	0.83	-0.7
1,651,710	+		Psyr_1463	0.83	-1.7
1,651,710	+		Psyr_1463	0.83	-0.0
1,651,711	-		Psyr_1463	0.83	-0.7
1,651,711	-		Psyr_1463	0.83	+0.2
1,651,711	-		Psyr_1463	0.83	-1.0
1,651,711	-		Psyr_1463	0.83	-0.2
1,651,954	-				+0.0
1,652,042	+				+0.6
1,652,138	+				+0.2
1,652,138	+				+0.3
1,652,164	-				-0.1
1,652,171	+				-1.0
1,652,171	+				+0.0
1,652,172	-				-0.2
1,652,172	-				+0.9
1,652,191	+				-1.1
1,652,191	+				+1.8
1,652,192	-				-0.0
1,652,194	+				+1.3
1,652,195	-				-0.1
1,652,195	-				-0.0
1,652,197	+				+0.2
1,652,408	+		Psyr_1464	0.15	-0.2
1,652,408	+		Psyr_1464	0.15	+0.0
1,652,408	+		Psyr_1464	0.15	+0.3
1,652,409	-		Psyr_1464	0.15	-1.1
1,652,477	+		Psyr_1464	0.20	+0.3
1,652,477	+		Psyr_1464	0.20	+1.0
1,652,477	+		Psyr_1464	0.20	+0.3
1,652,478	-		Psyr_1464	0.20	+0.2
1,652,510	+		Psyr_1464	0.22	-1.3
1,652,510	+		Psyr_1464	0.22	+0.9
1,652,510	+		Psyr_1464	0.22	-1.5
1,652,510	+		Psyr_1464	0.22	+0.7
1,652,511	-		Psyr_1464	0.22	-0.5
1,652,553	+		Psyr_1464	0.25	-3.5
1,652,553	+		Psyr_1464	0.25	-0.2
1,652,554	-		Psyr_1464	0.25	-1.1
1,652,554	-		Psyr_1464	0.25	-0.6
1,652,554	-		Psyr_1464	0.25	-1.6
1,652,554	-		Psyr_1464	0.25	+1.1
1,652,554	-		Psyr_1464	0.25	-1.0
1,652,557	+		Psyr_1464	0.25	-1.6
1,652,557	+		Psyr_1464	0.25	-1.2
1,652,557	+		Psyr_1464	0.25	-0.0
1,652,558	-		Psyr_1464	0.25	+0.1
1,652,558	-		Psyr_1464	0.25	-1.4
1,652,558	-		Psyr_1464	0.25	-0.2
1,652,558	-		Psyr_1464	0.25	-0.6
1,652,558	-		Psyr_1464	0.25	+0.4
1,652,558	-		Psyr_1464	0.25	+0.8
1,652,558	-		Psyr_1464	0.25	+0.8
1,652,558	-		Psyr_1464	0.25	+1.3
1,652,683	+		Psyr_1464	0.34	-0.8
1,652,683	+		Psyr_1464	0.34	+0.3
1,652,683	+		Psyr_1464	0.34	+0.5
1,652,683	+		Psyr_1464	0.34	+1.1
1,652,683	+		Psyr_1464	0.34	-1.0
1,652,683	+		Psyr_1464	0.34	-0.2
1,652,683	+		Psyr_1464	0.34	-0.5
1,652,683	+		Psyr_1464	0.34	+0.4
1,652,683	+		Psyr_1464	0.34	-0.6
1,652,683	+		Psyr_1464	0.34	+0.8
1,652,683	+		Psyr_1464	0.34	-0.4
1,652,683	+		Psyr_1464	0.34	+0.3
1,652,684	-		Psyr_1464	0.34	+0.5
1,652,684	-		Psyr_1464	0.34	-0.2
1,652,684	-		Psyr_1464	0.34	-0.8
1,652,684	-		Psyr_1464	0.34	-1.0
1,652,684	-		Psyr_1464	0.34	-0.5
1,652,684	-		Psyr_1464	0.34	+1.8
1,652,684	-		Psyr_1464	0.34	-1.4
1,652,684	-		Psyr_1464	0.34	-0.8
1,652,684	-		Psyr_1464	0.34	+0.0
1,652,684	-		Psyr_1464	0.34	+0.9
1,652,684	-		Psyr_1464	0.34	-0.5
1,652,684	-		Psyr_1464	0.34	+0.6
1,652,686	-		Psyr_1464	0.34	-0.2
1,652,730	+		Psyr_1464	0.37	-0.5
1,652,730	+		Psyr_1464	0.37	+0.2
1,652,730	+		Psyr_1464	0.37	-0.6
1,652,731	-		Psyr_1464	0.37	+0.8
1,652,731	-		Psyr_1464	0.37	-0.0
1,652,739	+		Psyr_1464	0.38	-1.2
1,652,740	-		Psyr_1464	0.38	+0.2
1,652,740	-		Psyr_1464	0.38	+0.8
1,652,847	+		Psyr_1464	0.45	-2.2
1,652,905	+		Psyr_1464	0.49	+0.2
1,652,906	-		Psyr_1464	0.49	+0.4
1,652,944	+		Psyr_1464	0.52	+1.1
1,652,944	+		Psyr_1464	0.52	-1.2
1,652,944	+		Psyr_1464	0.52	-1.2
1,652,945	-		Psyr_1464	0.52	-0.0
1,652,945	-		Psyr_1464	0.52	+0.2
1,652,945	-		Psyr_1464	0.52	-0.5
1,652,945	-		Psyr_1464	0.52	-0.2
1,653,013	+		Psyr_1464	0.56	-0.7
1,653,013	+		Psyr_1464	0.56	+1.3
1,653,013	+		Psyr_1464	0.56	-0.0
1,653,014	-		Psyr_1464	0.57	-2.5
1,653,014	-		Psyr_1464	0.57	+1.3
1,653,064	-		Psyr_1464	0.60	+2.1