Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1439

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1438 and Psyr_1439 are separated by 415 nucleotidesPsyr_1439 and Psyr_1440 are separated by 138 nucleotidesPsyr_1440 and Psyr_1441 overlap by 4 nucleotides Psyr_1438: Psyr_1438 - CDS, at 1,627,181 to 1,627,849 _1438 Psyr_1439: Psyr_1439 - Beta-lactamase, at 1,628,265 to 1,629,257 _1439 Psyr_1440: Psyr_1440 - DSBA oxidoreductase, at 1,629,396 to 1,630,082 _1440 Psyr_1441: Psyr_1441 - conserved hypothetical protein, at 1,630,079 to 1,630,378 _1441 Position (kb) 1628 1629 1630Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1627.266 kb on + strand, within Psyr_1438at 1627.266 kb on + strand, within Psyr_1438at 1627.267 kb on - strand, within Psyr_1438at 1627.267 kb on - strand, within Psyr_1438at 1627.267 kb on - strand, within Psyr_1438at 1627.273 kb on - strand, within Psyr_1438at 1627.358 kb on + strand, within Psyr_1438at 1627.359 kb on - strand, within Psyr_1438at 1627.359 kb on - strand, within Psyr_1438at 1627.411 kb on + strand, within Psyr_1438at 1627.411 kb on + strand, within Psyr_1438at 1627.411 kb on + strand, within Psyr_1438at 1627.411 kb on + strand, within Psyr_1438at 1627.411 kb on + strand, within Psyr_1438at 1627.411 kb on + strand, within Psyr_1438at 1627.412 kb on - strand, within Psyr_1438at 1627.412 kb on - strand, within Psyr_1438at 1627.412 kb on - strand, within Psyr_1438at 1627.443 kb on + strand, within Psyr_1438at 1627.581 kb on - strand, within Psyr_1438at 1627.647 kb on + strand, within Psyr_1438at 1627.647 kb on + strand, within Psyr_1438at 1627.647 kb on + strand, within Psyr_1438at 1627.648 kb on - strand, within Psyr_1438at 1627.648 kb on - strand, within Psyr_1438at 1627.691 kb on + strand, within Psyr_1438at 1627.692 kb on - strand, within Psyr_1438at 1627.692 kb on - strand, within Psyr_1438at 1627.692 kb on - strand, within Psyr_1438at 1627.745 kb on + strand, within Psyr_1438at 1627.745 kb on + strand, within Psyr_1438at 1627.746 kb on - strand, within Psyr_1438at 1627.765 kb on - strand, within Psyr_1438at 1627.860 kb on + strandat 1627.861 kb on - strandat 1627.910 kb on + strandat 1627.910 kb on + strandat 1627.911 kb on - strandat 1627.911 kb on - strandat 1627.911 kb on - strandat 1627.968 kb on + strandat 1627.968 kb on + strandat 1627.968 kb on + strandat 1627.968 kb on + strandat 1627.968 kb on + strandat 1627.968 kb on + strandat 1627.968 kb on + strandat 1627.968 kb on + strandat 1627.968 kb on + strandat 1627.968 kb on + strandat 1627.969 kb on - strandat 1627.969 kb on - strandat 1627.969 kb on - strandat 1627.969 kb on - strandat 1627.969 kb on - strandat 1627.972 kb on + strandat 1627.973 kb on - strandat 1627.973 kb on - strandat 1627.973 kb on - strandat 1627.973 kb on - strandat 1627.973 kb on - strandat 1628.018 kb on - strandat 1628.077 kb on + strandat 1628.077 kb on + strandat 1628.077 kb on + strandat 1628.077 kb on + strandat 1628.078 kb on - strandat 1628.078 kb on - strandat 1628.078 kb on - strandat 1628.079 kb on + strandat 1628.079 kb on + strandat 1628.079 kb on + strandat 1628.080 kb on - strandat 1628.080 kb on - strandat 1628.120 kb on + strandat 1628.121 kb on - strandat 1628.121 kb on - strandat 1628.188 kb on + strandat 1628.188 kb on + strandat 1628.241 kb on + strandat 1628.330 kb on + strandat 1628.330 kb on + strandat 1628.331 kb on - strandat 1628.337 kb on + strandat 1628.338 kb on - strandat 1628.408 kb on - strand, within Psyr_1439at 1628.470 kb on + strand, within Psyr_1439at 1628.470 kb on + strand, within Psyr_1439at 1628.470 kb on + strand, within Psyr_1439at 1628.471 kb on - strand, within Psyr_1439at 1628.471 kb on - strand, within Psyr_1439at 1628.474 kb on + strand, within Psyr_1439at 1628.509 kb on + strand, within Psyr_1439at 1628.532 kb on - strand, within Psyr_1439at 1628.551 kb on - strand, within Psyr_1439at 1628.635 kb on + strand, within Psyr_1439at 1628.635 kb on + strand, within Psyr_1439at 1628.636 kb on - strand, within Psyr_1439at 1628.702 kb on + strand, within Psyr_1439at 1628.731 kb on + strand, within Psyr_1439at 1628.731 kb on + strand, within Psyr_1439at 1628.732 kb on - strand, within Psyr_1439at 1628.732 kb on - strand, within Psyr_1439at 1628.732 kb on - strand, within Psyr_1439at 1628.732 kb on - strand, within Psyr_1439at 1628.732 kb on - strand, within Psyr_1439at 1628.740 kb on + strand, within Psyr_1439at 1628.741 kb on - strand, within Psyr_1439at 1628.754 kb on + strand, within Psyr_1439at 1628.764 kb on - strand, within Psyr_1439at 1628.777 kb on + strand, within Psyr_1439at 1628.778 kb on - strand, within Psyr_1439at 1628.783 kb on + strand, within Psyr_1439at 1628.783 kb on + strand, within Psyr_1439at 1628.784 kb on - strand, within Psyr_1439at 1628.784 kb on - strand, within Psyr_1439at 1628.791 kb on + strand, within Psyr_1439at 1628.791 kb on + strand, within Psyr_1439at 1628.791 kb on + strand, within Psyr_1439at 1628.792 kb on - strand, within Psyr_1439at 1628.795 kb on + strand, within Psyr_1439at 1628.796 kb on - strand, within Psyr_1439at 1628.822 kb on + strand, within Psyr_1439at 1628.822 kb on + strand, within Psyr_1439at 1628.822 kb on + strand, within Psyr_1439at 1628.822 kb on + strand, within Psyr_1439at 1628.834 kb on + strand, within Psyr_1439at 1628.835 kb on - strand, within Psyr_1439at 1628.882 kb on + strand, within Psyr_1439at 1628.882 kb on + strand, within Psyr_1439at 1628.920 kb on + strand, within Psyr_1439at 1628.920 kb on + strand, within Psyr_1439at 1628.923 kb on + strand, within Psyr_1439at 1628.923 kb on + strand, within Psyr_1439at 1628.923 kb on + strand, within Psyr_1439at 1628.924 kb on - strand, within Psyr_1439at 1628.924 kb on - strand, within Psyr_1439at 1628.945 kb on + strand, within Psyr_1439at 1628.946 kb on - strand, within Psyr_1439at 1628.980 kb on + strand, within Psyr_1439at 1628.988 kb on + strand, within Psyr_1439at 1628.988 kb on + strand, within Psyr_1439at 1628.988 kb on + strand, within Psyr_1439at 1628.998 kb on + strand, within Psyr_1439at 1628.998 kb on + strand, within Psyr_1439at 1628.999 kb on - strand, within Psyr_1439at 1629.049 kb on + strand, within Psyr_1439at 1629.143 kb on + strand, within Psyr_1439at 1629.143 kb on + strand, within Psyr_1439at 1629.147 kb on + strand, within Psyr_1439at 1629.148 kb on - strand, within Psyr_1439at 1629.269 kb on - strandat 1629.397 kb on + strandat 1629.397 kb on + strandat 1629.398 kb on - strandat 1629.398 kb on - strandat 1629.398 kb on - strandat 1629.398 kb on - strandat 1629.398 kb on - strandat 1629.398 kb on - strandat 1629.401 kb on + strandat 1629.401 kb on + strandat 1629.497 kb on + strand, within Psyr_1440at 1629.596 kb on + strand, within Psyr_1440at 1629.671 kb on + strand, within Psyr_1440at 1629.754 kb on + strand, within Psyr_1440at 1629.754 kb on + strand, within Psyr_1440at 1629.754 kb on + strand, within Psyr_1440at 1629.754 kb on + strand, within Psyr_1440at 1629.754 kb on + strand, within Psyr_1440at 1629.754 kb on + strand, within Psyr_1440at 1629.754 kb on + strand, within Psyr_1440at 1629.755 kb on - strand, within Psyr_1440at 1629.755 kb on - strand, within Psyr_1440at 1629.755 kb on - strand, within Psyr_1440at 1629.850 kb on + strand, within Psyr_1440at 1629.851 kb on - strand, within Psyr_1440at 1629.851 kb on - strand, within Psyr_1440at 1629.851 kb on - strand, within Psyr_1440at 1629.935 kb on + strand, within Psyr_1440at 1629.935 kb on + strand, within Psyr_1440at 1629.935 kb on + strand, within Psyr_1440at 1629.935 kb on + strand, within Psyr_1440at 1629.936 kb on - strand, within Psyr_1440at 1629.936 kb on - strand, within Psyr_1440at 1629.989 kb on + strand, within Psyr_1440at 1629.990 kb on - strand, within Psyr_1440at 1630.025 kb on + strandat 1630.051 kb on + strandat 1630.232 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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1,627,266 + Psyr_1438 0.13 -1.4
1,627,266 + Psyr_1438 0.13 +0.8
1,627,267 - Psyr_1438 0.13 -1.8
1,627,267 - Psyr_1438 0.13 +0.8
1,627,267 - Psyr_1438 0.13 +0.8
1,627,273 - Psyr_1438 0.14 +0.6
1,627,358 + Psyr_1438 0.26 +0.2
1,627,359 - Psyr_1438 0.27 +1.2
1,627,359 - Psyr_1438 0.27 +0.4
1,627,411 + Psyr_1438 0.34 -0.2
1,627,411 + Psyr_1438 0.34 +1.8
1,627,411 + Psyr_1438 0.34 +0.0
1,627,411 + Psyr_1438 0.34 -0.6
1,627,411 + Psyr_1438 0.34 +0.7
1,627,411 + Psyr_1438 0.34 -0.9
1,627,412 - Psyr_1438 0.35 +0.2
1,627,412 - Psyr_1438 0.35 -0.6
1,627,412 - Psyr_1438 0.35 +0.0
1,627,443 + Psyr_1438 0.39 -0.6
1,627,581 - Psyr_1438 0.60 -0.8
1,627,647 + Psyr_1438 0.70 +0.2
1,627,647 + Psyr_1438 0.70 -0.5
1,627,647 + Psyr_1438 0.70 -0.6
1,627,648 - Psyr_1438 0.70 +0.8
1,627,648 - Psyr_1438 0.70 +0.2
1,627,691 + Psyr_1438 0.76 -0.7
1,627,692 - Psyr_1438 0.76 -1.9
1,627,692 - Psyr_1438 0.76 -1.4
1,627,692 - Psyr_1438 0.76 -0.8
1,627,745 + Psyr_1438 0.84 +0.8
1,627,745 + Psyr_1438 0.84 -0.6
1,627,746 - Psyr_1438 0.84 -0.4
1,627,765 - Psyr_1438 0.87 -0.2
1,627,860 + +0.5
1,627,861 - -0.2
1,627,910 + +2.4
1,627,910 + -0.2
1,627,911 - -0.0
1,627,911 - -1.6
1,627,911 - -0.2
1,627,968 + -0.2
1,627,968 + -1.0
1,627,968 + +0.2
1,627,968 + +0.5
1,627,968 + +0.4
1,627,968 + +0.2
1,627,968 + -0.2
1,627,968 + -0.5
1,627,968 + -0.1
1,627,968 + -0.6
1,627,969 - -0.2
1,627,969 - -0.4
1,627,969 - +0.3
1,627,969 - +0.8
1,627,969 - -0.0
1,627,972 + +0.8
1,627,973 - +1.5
1,627,973 - +0.2
1,627,973 - -0.1
1,627,973 - +0.0
1,627,973 - -1.0
1,628,018 - +0.2
1,628,077 + +0.5
1,628,077 + +1.6
1,628,077 + -0.2
1,628,077 + -0.9
1,628,078 - +0.4
1,628,078 - +0.1
1,628,078 - +0.1
1,628,079 + +1.2
1,628,079 + -1.2
1,628,079 + +0.4
1,628,080 - +2.0
1,628,080 - +0.2
1,628,120 + +1.4
1,628,121 - +1.9
1,628,121 - -1.3
1,628,188 + -0.4
1,628,188 + +0.6
1,628,241 + +0.8
1,628,330 + -2.1
1,628,330 + -3.6
1,628,331 - -0.8
1,628,337 + -1.2
1,628,338 - +1.1
1,628,408 - Psyr_1439 0.14 +0.9
1,628,470 + Psyr_1439 0.21 +0.8
1,628,470 + Psyr_1439 0.21 +0.7
1,628,470 + Psyr_1439 0.21 -0.5
1,628,471 - Psyr_1439 0.21 -0.3
1,628,471 - Psyr_1439 0.21 -0.9
1,628,474 + Psyr_1439 0.21 +1.0
1,628,509 + Psyr_1439 0.25 -0.8
1,628,532 - Psyr_1439 0.27 +0.2
1,628,551 - Psyr_1439 0.29 +0.4
1,628,635 + Psyr_1439 0.37 +0.8
1,628,635 + Psyr_1439 0.37 -1.6
1,628,636 - Psyr_1439 0.37 -0.4
1,628,702 + Psyr_1439 0.44 +0.3
1,628,731 + Psyr_1439 0.47 +0.4
1,628,731 + Psyr_1439 0.47 +0.2
1,628,732 - Psyr_1439 0.47 -1.2
1,628,732 - Psyr_1439 0.47 -2.2
1,628,732 - Psyr_1439 0.47 -0.8
1,628,732 - Psyr_1439 0.47 -0.8
1,628,732 - Psyr_1439 0.47 +0.2
1,628,740 + Psyr_1439 0.48 -0.8
1,628,741 - Psyr_1439 0.48 -0.5
1,628,754 + Psyr_1439 0.49 +0.2
1,628,764 - Psyr_1439 0.50 -0.4
1,628,777 + Psyr_1439 0.52 -0.6
1,628,778 - Psyr_1439 0.52 -1.7
1,628,783 + Psyr_1439 0.52 -0.3
1,628,783 + Psyr_1439 0.52 +0.2
1,628,784 - Psyr_1439 0.52 -0.8
1,628,784 - Psyr_1439 0.52 -0.0
1,628,791 + Psyr_1439 0.53 -0.2
1,628,791 + Psyr_1439 0.53 -1.2
1,628,791 + Psyr_1439 0.53 -0.2
1,628,792 - Psyr_1439 0.53 -0.7
1,628,795 + Psyr_1439 0.53 -0.1
1,628,796 - Psyr_1439 0.53 +0.8
1,628,822 + Psyr_1439 0.56 -0.4
1,628,822 + Psyr_1439 0.56 +1.8
1,628,822 + Psyr_1439 0.56 -1.2
1,628,822 + Psyr_1439 0.56 -2.7
1,628,834 + Psyr_1439 0.57 +1.0
1,628,835 - Psyr_1439 0.57 -0.4
1,628,882 + Psyr_1439 0.62 -1.6
1,628,882 + Psyr_1439 0.62 -1.6
1,628,920 + Psyr_1439 0.66 -2.2
1,628,920 + Psyr_1439 0.66 -1.0
1,628,923 + Psyr_1439 0.66 +1.7
1,628,923 + Psyr_1439 0.66 +0.2
1,628,923 + Psyr_1439 0.66 -0.2
1,628,924 - Psyr_1439 0.66 -1.2
1,628,924 - Psyr_1439 0.66 -2.0
1,628,945 + Psyr_1439 0.68 +1.0
1,628,946 - Psyr_1439 0.69 -0.2
1,628,980 + Psyr_1439 0.72 -1.6
1,628,988 + Psyr_1439 0.73 -2.4
1,628,988 + Psyr_1439 0.73 -0.4
1,628,988 + Psyr_1439 0.73 -1.3
1,628,998 + Psyr_1439 0.74 +0.7
1,628,998 + Psyr_1439 0.74 -0.7
1,628,999 - Psyr_1439 0.74 -0.8
1,629,049 + Psyr_1439 0.79 -2.0
1,629,143 + Psyr_1439 0.88 -0.2
1,629,143 + Psyr_1439 0.88 -0.8
1,629,147 + Psyr_1439 0.89 +1.4
1,629,148 - Psyr_1439 0.89 -0.2
1,629,269 - -1.6
1,629,397 + -0.8
1,629,397 + +0.2
1,629,398 - -0.6
1,629,398 - -0.6
1,629,398 - -0.2
1,629,398 - +0.8
1,629,398 - -1.2
1,629,398 - -1.0
1,629,401 + -1.2
1,629,401 + -0.1
1,629,497 + Psyr_1440 0.15 +0.4
1,629,596 + Psyr_1440 0.29 +0.4
1,629,671 + Psyr_1440 0.40 +0.6
1,629,754 + Psyr_1440 0.52 -0.4
1,629,754 + Psyr_1440 0.52 -2.9
1,629,754 + Psyr_1440 0.52 +0.9
1,629,754 + Psyr_1440 0.52 -0.1
1,629,754 + Psyr_1440 0.52 +0.8
1,629,754 + Psyr_1440 0.52 +1.5
1,629,754 + Psyr_1440 0.52 -0.3
1,629,755 - Psyr_1440 0.52 +0.8
1,629,755 - Psyr_1440 0.52 -1.8
1,629,755 - Psyr_1440 0.52 -0.8
1,629,850 + Psyr_1440 0.66 +0.8
1,629,851 - Psyr_1440 0.66 -1.0
1,629,851 - Psyr_1440 0.66 -1.2
1,629,851 - Psyr_1440 0.66 -1.5
1,629,935 + Psyr_1440 0.78 -0.1
1,629,935 + Psyr_1440 0.78 -0.8
1,629,935 + Psyr_1440 0.78 +0.3
1,629,935 + Psyr_1440 0.78 +0.1
1,629,936 - Psyr_1440 0.79 -0.2
1,629,936 - Psyr_1440 0.79 -0.7
1,629,989 + Psyr_1440 0.86 +0.8
1,629,990 - Psyr_1440 0.86 +0.2
1,630,025 + +0.2
1,630,051 + -1.4
1,630,232 + Psyr_1441 0.51 +0.0
1,630,256 + Psyr_1441 0.59 +2.2
1,630,256 + Psyr_1441 0.59 -0.5
1,630,256 + Psyr_1441 0.59 -1.2
1,630,256 + Psyr_1441 0.59 -0.8
1,630,256 + Psyr_1441 0.59 +0.5
1,630,256 + Psyr_1441 0.59 -0.7
1,630,256 + Psyr_1441 0.59 +0.6
1,630,257 - Psyr_1441 0.59 -1.0
1,630,257 - Psyr_1441 0.59 +1.8
1,630,257 - Psyr_1441 0.59 +0.2

Or see this region's nucleotide sequence