Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1333

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1332 and Psyr_1333 are separated by 301 nucleotidesPsyr_1333 and Psyr_1334 overlap by 10 nucleotidesPsyr_1334 and Psyr_1335 overlap by 4 nucleotides Psyr_1332: Psyr_1332 - Glycosyl transferase, family 2, at 1,509,862 to 1,512,357 _1332 Psyr_1333: Psyr_1333 - UBA/THIF-type NAD/FAD binding fold protein, at 1,512,659 to 1,513,489 _1333 Psyr_1334: Psyr_1334 - Cysteine desulfuration protein SufE, at 1,513,480 to 1,513,887 _1334 Psyr_1335: Psyr_1335 - Aminotransferase, class V, at 1,513,884 to 1,515,125 _1335 Position (kb) 1512 1513 1514Strain fitness (log2 ratio) -1 0 1 2 3at 1511.710 kb on + strand, within Psyr_1332at 1511.710 kb on + strand, within Psyr_1332at 1511.711 kb on - strand, within Psyr_1332at 1511.711 kb on - strand, within Psyr_1332at 1511.711 kb on - strand, within Psyr_1332at 1511.812 kb on - strand, within Psyr_1332at 1511.924 kb on + strand, within Psyr_1332at 1511.924 kb on + strand, within Psyr_1332at 1512.032 kb on - strand, within Psyr_1332at 1512.032 kb on - strand, within Psyr_1332at 1512.065 kb on - strand, within Psyr_1332at 1512.144 kb on - strandat 1512.151 kb on + strandat 1512.151 kb on + strandat 1512.151 kb on + strandat 1512.152 kb on - strandat 1512.152 kb on - strandat 1512.152 kb on - strandat 1512.152 kb on - strandat 1512.154 kb on - strandat 1512.154 kb on - strandat 1512.154 kb on - strandat 1512.176 kb on - strandat 1512.193 kb on + strandat 1512.194 kb on - strandat 1512.224 kb on + strandat 1512.336 kb on + strandat 1512.454 kb on + strandat 1512.454 kb on + strandat 1512.455 kb on - strandat 1512.521 kb on + strandat 1512.537 kb on + strandat 1512.627 kb on + strandat 1512.629 kb on + strandat 1512.652 kb on - strandat 1512.699 kb on + strandat 1512.699 kb on + strandat 1512.699 kb on + strandat 1512.699 kb on + strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.701 kb on + strandat 1512.702 kb on - strandat 1512.848 kb on - strand, within Psyr_1333at 1512.880 kb on + strand, within Psyr_1333at 1512.881 kb on - strand, within Psyr_1333at 1513.238 kb on + strand, within Psyr_1333at 1513.238 kb on + strand, within Psyr_1333at 1513.239 kb on - strand, within Psyr_1333at 1513.297 kb on + strand, within Psyr_1333at 1513.297 kb on + strand, within Psyr_1333at 1513.298 kb on - strand, within Psyr_1333at 1513.298 kb on - strand, within Psyr_1333at 1513.298 kb on - strand, within Psyr_1333at 1513.298 kb on - strand, within Psyr_1333at 1513.333 kb on - strand, within Psyr_1333at 1513.470 kb on + strandat 1513.646 kb on - strand, within Psyr_1334at 1513.744 kb on + strand, within Psyr_1334at 1513.744 kb on + strand, within Psyr_1334at 1513.744 kb on + strand, within Psyr_1334at 1513.744 kb on + strand, within Psyr_1334at 1513.744 kb on + strand, within Psyr_1334at 1513.745 kb on - strand, within Psyr_1334at 1513.951 kb on + strandat 1513.951 kb on + strandat 1513.952 kb on - strandat 1513.952 kb on - strandat 1514.225 kb on - strand, within Psyr_1335at 1514.317 kb on + strand, within Psyr_1335at 1514.417 kb on - strand, within Psyr_1335at 1514.440 kb on + strand, within Psyr_1335at 1514.441 kb on - strand, within Psyr_1335

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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1,511,710 + Psyr_1332 0.74 -0.7
1,511,710 + Psyr_1332 0.74 -0.8
1,511,711 - Psyr_1332 0.74 -0.1
1,511,711 - Psyr_1332 0.74 +1.6
1,511,711 - Psyr_1332 0.74 +0.3
1,511,812 - Psyr_1332 0.78 +0.0
1,511,924 + Psyr_1332 0.83 -0.1
1,511,924 + Psyr_1332 0.83 -1.2
1,512,032 - Psyr_1332 0.87 -0.7
1,512,032 - Psyr_1332 0.87 +0.3
1,512,065 - Psyr_1332 0.88 +0.3
1,512,144 - -1.1
1,512,151 + -0.0
1,512,151 + +0.8
1,512,151 + -0.6
1,512,152 - +0.2
1,512,152 - +1.3
1,512,152 - +0.8
1,512,152 - -1.6
1,512,154 - -0.2
1,512,154 - +0.8
1,512,154 - -0.0
1,512,176 - +0.1
1,512,193 + -0.5
1,512,194 - +0.3
1,512,224 + -0.2
1,512,336 + +0.8
1,512,454 + -0.2
1,512,454 + +0.2
1,512,455 - -0.6
1,512,521 + -1.4
1,512,537 + +2.1
1,512,627 + +0.6
1,512,629 + -0.0
1,512,652 - +0.4
1,512,699 + -0.2
1,512,699 + -1.2
1,512,699 + +1.5
1,512,699 + -1.2
1,512,700 - +0.1
1,512,700 - -1.6
1,512,700 - -0.2
1,512,700 - +0.2
1,512,700 - +0.2
1,512,700 - +1.8
1,512,700 - -0.8
1,512,700 - +0.8
1,512,700 - -0.2
1,512,700 - -0.4
1,512,701 + -0.8
1,512,702 - -0.2
1,512,848 - Psyr_1333 0.23 +0.2
1,512,880 + Psyr_1333 0.27 -0.1
1,512,881 - Psyr_1333 0.27 +0.8
1,513,238 + Psyr_1333 0.70 -0.0
1,513,238 + Psyr_1333 0.70 +0.6
1,513,239 - Psyr_1333 0.70 -1.2
1,513,297 + Psyr_1333 0.77 -0.1
1,513,297 + Psyr_1333 0.77 -1.3
1,513,298 - Psyr_1333 0.77 +0.5
1,513,298 - Psyr_1333 0.77 +0.8
1,513,298 - Psyr_1333 0.77 +1.3
1,513,298 - Psyr_1333 0.77 +1.0
1,513,333 - Psyr_1333 0.81 -0.0
1,513,470 + +1.0
1,513,646 - Psyr_1334 0.41 -0.2
1,513,744 + Psyr_1334 0.65 -0.4
1,513,744 + Psyr_1334 0.65 +0.8
1,513,744 + Psyr_1334 0.65 +1.3
1,513,744 + Psyr_1334 0.65 +0.0
1,513,744 + Psyr_1334 0.65 -0.2
1,513,745 - Psyr_1334 0.65 +2.3
1,513,951 + -0.7
1,513,951 + -0.8
1,513,952 - -0.2
1,513,952 - -0.6
1,514,225 - Psyr_1335 0.27 +2.1
1,514,317 + Psyr_1335 0.35 +0.3
1,514,417 - Psyr_1335 0.43 +0.2
1,514,440 + Psyr_1335 0.45 +0.9
1,514,441 - Psyr_1335 0.45 +2.9

Or see this region's nucleotide sequence