Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1173

Experiment: KB with Nitrofurantoin 125 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1171 and Psyr_1172 are separated by 61 nucleotidesPsyr_1172 and Psyr_1173 are separated by 172 nucleotidesPsyr_1173 and Psyr_1174 are separated by 48 nucleotides Psyr_1171: Psyr_1171 - conserved hypothetical protein, at 1,325,875 to 1,326,255 _1171 Psyr_1172: Psyr_1172 - transcriptional regulator, AsnC family, at 1,326,317 to 1,326,796 _1172 Psyr_1173: Psyr_1173 - Lysine exporter protein (LYSE/YGGA), at 1,326,969 to 1,327,589 _1173 Psyr_1174: Psyr_1174 - Sugar transporter, at 1,327,638 to 1,329,059 _1174 Position (kb) 1326 1327 1328Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1325.972 kb on + strand, within Psyr_1171at 1325.973 kb on - strand, within Psyr_1171at 1326.100 kb on + strand, within Psyr_1171at 1326.100 kb on + strand, within Psyr_1171at 1326.100 kb on + strand, within Psyr_1171at 1326.100 kb on + strand, within Psyr_1171at 1326.101 kb on - strand, within Psyr_1171at 1326.101 kb on - strand, within Psyr_1171at 1326.104 kb on + strand, within Psyr_1171at 1326.104 kb on + strand, within Psyr_1171at 1326.104 kb on + strand, within Psyr_1171at 1326.104 kb on + strand, within Psyr_1171at 1326.104 kb on + strandat 1326.104 kb on + strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.260 kb on - strandat 1326.267 kb on + strandat 1326.267 kb on + strandat 1326.268 kb on - strandat 1326.268 kb on - strandat 1326.313 kb on + strandat 1326.313 kb on + strandat 1326.313 kb on + strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.318 kb on + strandat 1326.318 kb on + strandat 1326.356 kb on + strandat 1326.356 kb on + strandat 1326.456 kb on - strand, within Psyr_1172at 1326.496 kb on - strand, within Psyr_1172at 1326.496 kb on - strand, within Psyr_1172at 1326.560 kb on - strand, within Psyr_1172at 1326.577 kb on + strand, within Psyr_1172at 1326.578 kb on - strand, within Psyr_1172at 1326.623 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.646 kb on - strand, within Psyr_1172at 1326.646 kb on - strand, within Psyr_1172at 1326.731 kb on - strand, within Psyr_1172at 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.770 kb on + strandat 1326.779 kb on + strandat 1326.796 kb on + strandat 1326.797 kb on - strandat 1326.797 kb on - strandat 1326.853 kb on - strandat 1326.889 kb on + strandat 1326.992 kb on + strandat 1326.992 kb on + strandat 1326.992 kb on + strandat 1326.992 kb on + strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.996 kb on + strandat 1327.128 kb on + strand, within Psyr_1173at 1327.128 kb on + strand, within Psyr_1173at 1327.129 kb on - strand, within Psyr_1173at 1327.129 kb on - strand, within Psyr_1173at 1327.144 kb on + strand, within Psyr_1173at 1327.193 kb on - strand, within Psyr_1173at 1327.215 kb on + strand, within Psyr_1173at 1327.216 kb on - strand, within Psyr_1173at 1327.225 kb on - strand, within Psyr_1173at 1327.264 kb on + strand, within Psyr_1173at 1327.264 kb on + strand, within Psyr_1173at 1327.265 kb on - strand, within Psyr_1173at 1327.265 kb on - strand, within Psyr_1173at 1327.265 kb on - strand, within Psyr_1173at 1327.328 kb on + strand, within Psyr_1173at 1327.328 kb on + strand, within Psyr_1173at 1327.328 kb on + strand, within Psyr_1173at 1327.329 kb on - strand, within Psyr_1173at 1327.359 kb on + strand, within Psyr_1173at 1327.359 kb on + strand, within Psyr_1173at 1327.360 kb on - strand, within Psyr_1173at 1327.447 kb on + strand, within Psyr_1173at 1327.474 kb on + strand, within Psyr_1173at 1327.475 kb on - strand, within Psyr_1173at 1327.475 kb on - strand, within Psyr_1173at 1327.475 kb on - strand, within Psyr_1173at 1327.639 kb on + strandat 1327.957 kb on + strand, within Psyr_1174at 1327.957 kb on + strand, within Psyr_1174at 1327.957 kb on + strand, within Psyr_1174at 1327.957 kb on + strand, within Psyr_1174at 1327.957 kb on + strand, within Psyr_1174at 1327.958 kb on - strand, within Psyr_1174at 1327.958 kb on - strand, within Psyr_1174at 1328.182 kb on + strand, within Psyr_1174at 1328.182 kb on + strand, within Psyr_1174at 1328.182 kb on + strand, within Psyr_1174at 1328.183 kb on - strand, within Psyr_1174at 1328.183 kb on - strand, within Psyr_1174at 1328.185 kb on + strand, within Psyr_1174at 1328.185 kb on + strand, within Psyr_1174at 1328.185 kb on + strand, within Psyr_1174at 1328.185 kb on + strand, within Psyr_1174at 1328.185 kb on + strandat 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.232 kb on + strand, within Psyr_1174at 1328.232 kb on + strand, within Psyr_1174at 1328.233 kb on - strand, within Psyr_1174at 1328.233 kb on - strand, within Psyr_1174at 1328.433 kb on + strand, within Psyr_1174at 1328.444 kb on + strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.448 kb on + strand, within Psyr_1174at 1328.449 kb on - strand, within Psyr_1174at 1328.449 kb on - strand, within Psyr_1174at 1328.449 kb on - strand, within Psyr_1174at 1328.491 kb on + strand, within Psyr_1174at 1328.491 kb on + strand, within Psyr_1174at 1328.492 kb on - strand, within Psyr_1174at 1328.492 kb on - strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.546 kb on - strand, within Psyr_1174at 1328.546 kb on - strand, within Psyr_1174

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
remove
1,325,972 + Psyr_1171 0.25 -0.5
1,325,973 - Psyr_1171 0.26 -2.0
1,326,100 + Psyr_1171 0.59 -1.9
1,326,100 + Psyr_1171 0.59 -0.6
1,326,100 + Psyr_1171 0.59 +0.3
1,326,100 + Psyr_1171 0.59 -0.2
1,326,101 - Psyr_1171 0.59 -0.7
1,326,101 - Psyr_1171 0.59 -0.4
1,326,104 + Psyr_1171 0.60 +1.2
1,326,104 + Psyr_1171 0.60 +0.6
1,326,104 + Psyr_1171 0.60 -0.7
1,326,104 + Psyr_1171 0.60 -0.8
1,326,104 + -1.6
1,326,104 + Psyr_1171 0.60 +1.2
1,326,105 - Psyr_1171 0.60 -0.8
1,326,105 - Psyr_1171 0.60 -0.6
1,326,105 - Psyr_1171 0.60 +0.2
1,326,105 - Psyr_1171 0.60 +0.8
1,326,105 - Psyr_1171 0.60 -0.8
1,326,105 - Psyr_1171 0.60 +0.1
1,326,105 - Psyr_1171 0.60 +0.5
1,326,105 - Psyr_1171 0.60 +0.5
1,326,105 - Psyr_1171 0.60 +0.1
1,326,167 + Psyr_1171 0.77 +0.8
1,326,167 + Psyr_1171 0.77 -2.0
1,326,167 + Psyr_1171 0.77 -1.9
1,326,167 + Psyr_1171 0.77 +1.0
1,326,167 + Psyr_1171 0.77 -0.0
1,326,167 + Psyr_1171 0.77 -0.6
1,326,167 + Psyr_1171 0.77 -0.8
1,326,167 + Psyr_1171 0.77 -2.0
1,326,167 + Psyr_1171 0.77 -0.2
1,326,167 + Psyr_1171 0.77 +1.5
1,326,167 + Psyr_1171 0.77 -0.8
1,326,168 - Psyr_1171 0.77 -0.8
1,326,168 - Psyr_1171 0.77 +1.1
1,326,168 - Psyr_1171 0.77 -2.0
1,326,168 - Psyr_1171 0.77 +0.2
1,326,168 - Psyr_1171 0.77 +1.2
1,326,168 - Psyr_1171 0.77 -0.6
1,326,168 - Psyr_1171 0.77 -1.6
1,326,168 - Psyr_1171 0.77 -0.8
1,326,168 - Psyr_1171 0.77 +0.4
1,326,260 - +0.4
1,326,267 + -0.1
1,326,267 + -1.2
1,326,268 - -0.2
1,326,268 - -1.5
1,326,313 + -0.1
1,326,313 + -0.4
1,326,313 + -1.2
1,326,314 - +2.3
1,326,314 - +0.5
1,326,314 - -0.7
1,326,314 - -0.7
1,326,314 - -0.2
1,326,314 - -2.4
1,326,318 + -1.2
1,326,318 + +0.8
1,326,356 + -0.3
1,326,356 + -1.8
1,326,456 - Psyr_1172 0.29 -1.0
1,326,496 - Psyr_1172 0.37 +0.2
1,326,496 - Psyr_1172 0.37 -0.3
1,326,560 - Psyr_1172 0.51 -1.0
1,326,577 + Psyr_1172 0.54 +0.2
1,326,578 - Psyr_1172 0.54 -1.6
1,326,623 + Psyr_1172 0.64 +1.5
1,326,645 + Psyr_1172 0.68 +1.6
1,326,645 + Psyr_1172 0.68 +0.9
1,326,645 + Psyr_1172 0.68 -0.1
1,326,645 + Psyr_1172 0.68 -0.5
1,326,646 - Psyr_1172 0.69 -0.8
1,326,646 - Psyr_1172 0.69 +0.7
1,326,731 - Psyr_1172 0.86 +0.6
1,326,764 + +0.2
1,326,764 + -0.5
1,326,764 + -0.1
1,326,764 + -0.4
1,326,764 + -1.0
1,326,764 + -1.0
1,326,764 + +0.8
1,326,765 - -0.3
1,326,765 - +0.4
1,326,765 - +0.6
1,326,765 - -0.2
1,326,765 - +0.3
1,326,765 - +1.3
1,326,765 - -0.7
1,326,765 - -0.8
1,326,765 - +0.5
1,326,765 - -0.7
1,326,765 - +0.1
1,326,770 + -0.2
1,326,779 + +0.6
1,326,796 + +0.2
1,326,797 - -0.1
1,326,797 - -0.1
1,326,853 - -0.5
1,326,889 + -0.3
1,326,992 + +1.8
1,326,992 + -0.2
1,326,992 + -0.3
1,326,992 + -2.8
1,326,993 - +2.1
1,326,993 - +0.2
1,326,993 - -0.7
1,326,993 - +0.3
1,326,993 - -0.6
1,326,993 - +0.0
1,326,996 + -0.2
1,327,128 + Psyr_1173 0.26 -0.4
1,327,128 + Psyr_1173 0.26 +0.0
1,327,129 - Psyr_1173 0.26 -1.3
1,327,129 - Psyr_1173 0.26 -1.0
1,327,144 + Psyr_1173 0.28 -0.6
1,327,193 - Psyr_1173 0.36 +2.3
1,327,215 + Psyr_1173 0.40 -0.4
1,327,216 - Psyr_1173 0.40 +0.3
1,327,225 - Psyr_1173 0.41 +0.3
1,327,264 + Psyr_1173 0.48 -0.6
1,327,264 + Psyr_1173 0.48 -0.1
1,327,265 - Psyr_1173 0.48 +0.4
1,327,265 - Psyr_1173 0.48 -0.8
1,327,265 - Psyr_1173 0.48 -1.2
1,327,328 + Psyr_1173 0.58 +0.8
1,327,328 + Psyr_1173 0.58 -0.6
1,327,328 + Psyr_1173 0.58 +0.9
1,327,329 - Psyr_1173 0.58 -1.7
1,327,359 + Psyr_1173 0.63 -0.2
1,327,359 + Psyr_1173 0.63 -0.2
1,327,360 - Psyr_1173 0.63 +0.1
1,327,447 + Psyr_1173 0.77 -0.1
1,327,474 + Psyr_1173 0.81 -0.2
1,327,475 - Psyr_1173 0.81 -1.4
1,327,475 - Psyr_1173 0.81 -0.8
1,327,475 - Psyr_1173 0.81 -2.4
1,327,639 + -2.2
1,327,957 + Psyr_1174 0.22 -0.9
1,327,957 + Psyr_1174 0.22 +0.2
1,327,957 + Psyr_1174 0.22 -2.0
1,327,957 + Psyr_1174 0.22 -0.0
1,327,957 + Psyr_1174 0.22 +0.0
1,327,958 - Psyr_1174 0.23 -1.9
1,327,958 - Psyr_1174 0.23 +0.8
1,328,182 + Psyr_1174 0.38 +0.8
1,328,182 + Psyr_1174 0.38 -0.0
1,328,182 + Psyr_1174 0.38 +0.1
1,328,183 - Psyr_1174 0.38 +0.9
1,328,183 - Psyr_1174 0.38 -0.5
1,328,185 + Psyr_1174 0.38 -2.0
1,328,185 + Psyr_1174 0.38 -0.1
1,328,185 + Psyr_1174 0.38 +0.5
1,328,185 + Psyr_1174 0.38 -1.1
1,328,185 + -1.6
1,328,186 - Psyr_1174 0.39 +0.3
1,328,186 - Psyr_1174 0.39 +0.6
1,328,186 - Psyr_1174 0.39 +0.5
1,328,186 - Psyr_1174 0.39 +0.6
1,328,186 - Psyr_1174 0.39 -0.8
1,328,186 - Psyr_1174 0.39 -0.2
1,328,186 - Psyr_1174 0.39 +2.8
1,328,186 - Psyr_1174 0.39 +0.3
1,328,232 + Psyr_1174 0.42 -1.2
1,328,232 + Psyr_1174 0.42 -0.8
1,328,233 - Psyr_1174 0.42 +1.3
1,328,233 - Psyr_1174 0.42 -0.0
1,328,433 + Psyr_1174 0.56 -1.0
1,328,444 + Psyr_1174 0.57 -0.7
1,328,445 - Psyr_1174 0.57 +0.0
1,328,445 - Psyr_1174 0.57 +0.1
1,328,445 - Psyr_1174 0.57 -0.5
1,328,445 - Psyr_1174 0.57 -0.2
1,328,445 - Psyr_1174 0.57 +0.9
1,328,448 + Psyr_1174 0.57 -1.0
1,328,449 - Psyr_1174 0.57 +1.8
1,328,449 - Psyr_1174 0.57 +0.5
1,328,449 - Psyr_1174 0.57 +0.2
1,328,491 + Psyr_1174 0.60 -1.7
1,328,491 + Psyr_1174 0.60 -1.0
1,328,492 - Psyr_1174 0.60 +0.4
1,328,492 - Psyr_1174 0.60 +1.3
1,328,510 + Psyr_1174 0.61 -1.0
1,328,510 + Psyr_1174 0.61 +0.6
1,328,510 + Psyr_1174 0.61 +0.2
1,328,510 + Psyr_1174 0.61 +0.0
1,328,510 + Psyr_1174 0.61 +0.2
1,328,510 + Psyr_1174 0.61 -0.1
1,328,510 + Psyr_1174 0.61 +1.0
1,328,511 - Psyr_1174 0.61 +0.1
1,328,511 - Psyr_1174 0.61 +0.0
1,328,511 - Psyr_1174 0.61 +0.2
1,328,511 - Psyr_1174 0.61 -0.2
1,328,545 + Psyr_1174 0.64 +0.3
1,328,545 + Psyr_1174 0.64 -2.2
1,328,545 + Psyr_1174 0.64 -1.9
1,328,545 + Psyr_1174 0.64 +0.8
1,328,545 + Psyr_1174 0.64 +1.2
1,328,545 + Psyr_1174 0.64 -0.3
1,328,546 - Psyr_1174 0.64 -0.0
1,328,546 - Psyr_1174 0.64 +0.1

Or see this region's nucleotide sequence