Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1095

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1093 and Psyr_1094 are separated by 128 nucleotidesPsyr_1094 and Psyr_1095 are separated by 411 nucleotidesPsyr_1095 and Psyr_1096 are separated by 81 nucleotides Psyr_1093: Psyr_1093 - permease YjgP/YjgQ, at 1,235,580 to 1,236,641 _1093 Psyr_1094: Psyr_1094 - cold-shock DNA-binding protein family, at 1,236,770 to 1,236,982 _1094 Psyr_1095: Psyr_1095 - Glycine cleavage system T protein, at 1,237,394 to 1,238,518 _1095 Psyr_1096: Psyr_1096 - glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit, at 1,238,600 to 1,241,464 _1096 Position (kb) 1237 1238 1239Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1236.640 kb on - strandat 1236.750 kb on - strandat 1236.890 kb on + strand, within Psyr_1094at 1236.890 kb on + strand, within Psyr_1094at 1236.890 kb on + strand, within Psyr_1094at 1236.891 kb on - strand, within Psyr_1094at 1236.891 kb on - strand, within Psyr_1094at 1236.922 kb on + strand, within Psyr_1094at 1236.923 kb on - strand, within Psyr_1094at 1236.923 kb on - strand, within Psyr_1094at 1237.063 kb on + strandat 1237.072 kb on + strandat 1237.072 kb on + strandat 1237.072 kb on + strandat 1237.073 kb on - strandat 1237.084 kb on + strandat 1237.084 kb on + strandat 1237.085 kb on - strandat 1237.085 kb on - strandat 1237.100 kb on - strandat 1237.171 kb on + strandat 1237.171 kb on + strandat 1237.172 kb on - strandat 1237.172 kb on - strandat 1237.172 kb on - strandat 1237.215 kb on - strandat 1237.216 kb on + strandat 1237.217 kb on - strandat 1237.217 kb on - strandat 1237.217 kb on - strandat 1237.233 kb on + strandat 1237.234 kb on - strandat 1237.234 kb on - strandat 1237.274 kb on + strandat 1237.277 kb on - strandat 1237.293 kb on + strandat 1237.293 kb on + strandat 1237.294 kb on - strandat 1237.294 kb on - strandat 1237.294 kb on - strandat 1237.295 kb on + strandat 1237.295 kb on + strandat 1237.295 kb on + strandat 1237.296 kb on - strandat 1237.296 kb on - strandat 1237.296 kb on - strandat 1237.296 kb on - strandat 1237.296 kb on - strandat 1237.323 kb on - strandat 1237.323 kb on - strandat 1237.391 kb on + strandat 1237.407 kb on + strandat 1237.408 kb on - strandat 1237.408 kb on - strandat 1237.497 kb on + strandat 1237.498 kb on - strandat 1237.498 kb on - strandat 1237.498 kb on - strandat 1237.751 kb on + strand, within Psyr_1095at 1237.853 kb on - strand, within Psyr_1095at 1237.944 kb on + strand, within Psyr_1095at 1237.945 kb on - strand, within Psyr_1095at 1237.945 kb on - strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.962 kb on + strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1237.963 kb on - strand, within Psyr_1095at 1238.418 kb on + strandat 1238.544 kb on + strandat 1238.613 kb on + strandat 1238.614 kb on - strandat 1238.691 kb on + strandat 1238.691 kb on + strandat 1238.691 kb on + strandat 1238.691 kb on + strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.692 kb on - strandat 1238.722 kb on - strandat 1238.722 kb on - strandat 1238.742 kb on + strandat 1239.075 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.114 kb on + strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strand, within Psyr_1096at 1239.115 kb on - strandat 1239.115 kb on - strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.180 kb on + strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.181 kb on - strand, within Psyr_1096at 1239.433 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.435 kb on + strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.436 kb on - strand, within Psyr_1096at 1239.514 kb on - strand, within Psyr_1096at 1239.514 kb on - strand, within Psyr_1096

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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1,236,640 - -0.3
1,236,750 - -0.4
1,236,890 + Psyr_1094 0.56 -0.5
1,236,890 + Psyr_1094 0.56 -0.9
1,236,890 + Psyr_1094 0.56 -1.2
1,236,891 - Psyr_1094 0.57 -0.3
1,236,891 - Psyr_1094 0.57 +0.4
1,236,922 + Psyr_1094 0.71 -1.4
1,236,923 - Psyr_1094 0.72 -0.8
1,236,923 - Psyr_1094 0.72 -0.2
1,237,063 + -3.3
1,237,072 + -0.2
1,237,072 + -0.8
1,237,072 + -0.2
1,237,073 - -0.2
1,237,084 + +0.8
1,237,084 + -0.5
1,237,085 - +0.5
1,237,085 - +0.2
1,237,100 - -1.3
1,237,171 + -0.3
1,237,171 + +1.9
1,237,172 - -1.2
1,237,172 - +0.2
1,237,172 - +0.3
1,237,215 - -0.5
1,237,216 + +0.1
1,237,217 - +0.2
1,237,217 - +0.4
1,237,217 - -1.0
1,237,233 + -1.1
1,237,234 - +0.9
1,237,234 - -1.8
1,237,274 + +2.8
1,237,277 - -0.4
1,237,293 + -1.3
1,237,293 + +0.0
1,237,294 - +0.3
1,237,294 - -0.6
1,237,294 - +0.1
1,237,295 + -1.0
1,237,295 + +1.4
1,237,295 + +0.1
1,237,296 - +0.8
1,237,296 - -0.0
1,237,296 - -0.3
1,237,296 - -0.7
1,237,296 - -0.2
1,237,323 - -0.3
1,237,323 - +0.8
1,237,391 + +0.3
1,237,407 + -0.8
1,237,408 - +0.3
1,237,408 - +0.2
1,237,497 + +1.2
1,237,498 - +0.8
1,237,498 - +0.1
1,237,498 - +1.8
1,237,751 + Psyr_1095 0.32 +0.4
1,237,853 - Psyr_1095 0.41 +1.4
1,237,944 + Psyr_1095 0.49 +0.1
1,237,945 - Psyr_1095 0.49 +0.8
1,237,945 - Psyr_1095 0.49 +0.8
1,237,962 + Psyr_1095 0.50 +0.5
1,237,962 + Psyr_1095 0.50 +1.9
1,237,962 + Psyr_1095 0.50 +0.5
1,237,962 + Psyr_1095 0.50 -0.2
1,237,963 - Psyr_1095 0.51 +0.6
1,237,963 - Psyr_1095 0.51 +0.1
1,238,418 + -0.1
1,238,544 + -0.0
1,238,613 + -0.2
1,238,614 - -2.8
1,238,691 + -0.2
1,238,691 + -1.1
1,238,691 + -1.0
1,238,691 + +0.4
1,238,692 - +1.4
1,238,692 - +1.0
1,238,692 - -0.3
1,238,692 - +0.5
1,238,692 - -0.1
1,238,692 - -0.8
1,238,722 - -0.3
1,238,722 - +0.1
1,238,742 + -2.0
1,239,075 + Psyr_1096 0.17 -0.2
1,239,114 + Psyr_1096 0.18 -1.6
1,239,114 + Psyr_1096 0.18 -0.2
1,239,114 + Psyr_1096 0.18 +0.8
1,239,114 + Psyr_1096 0.18 -1.6
1,239,114 + Psyr_1096 0.18 +1.4
1,239,114 + Psyr_1096 0.18 -0.6
1,239,114 + Psyr_1096 0.18 +0.5
1,239,115 - Psyr_1096 0.18 -0.8
1,239,115 - Psyr_1096 0.18 +0.0
1,239,115 - Psyr_1096 0.18 -0.5
1,239,115 - Psyr_1096 0.18 -0.6
1,239,115 - Psyr_1096 0.18 +0.8
1,239,115 - Psyr_1096 0.18 -0.3
1,239,115 - Psyr_1096 0.18 +0.6
1,239,115 - Psyr_1096 0.18 -1.1
1,239,115 - +0.2
1,239,115 - Psyr_1096 0.18 -0.0
1,239,180 + Psyr_1096 0.20 -1.8
1,239,180 + Psyr_1096 0.20 +0.0
1,239,180 + Psyr_1096 0.20 -0.8
1,239,180 + Psyr_1096 0.20 +0.2
1,239,180 + Psyr_1096 0.20 +0.3
1,239,180 + Psyr_1096 0.20 +0.3
1,239,180 + Psyr_1096 0.20 -0.5
1,239,180 + Psyr_1096 0.20 +0.0
1,239,180 + Psyr_1096 0.20 -3.2
1,239,180 + Psyr_1096 0.20 -0.8
1,239,180 + Psyr_1096 0.20 +1.0
1,239,180 + Psyr_1096 0.20 +1.8
1,239,180 + Psyr_1096 0.20 -1.2
1,239,180 + Psyr_1096 0.20 +0.2
1,239,181 - Psyr_1096 0.20 +2.1
1,239,181 - Psyr_1096 0.20 -0.6
1,239,181 - Psyr_1096 0.20 -0.6
1,239,181 - Psyr_1096 0.20 +0.8
1,239,181 - Psyr_1096 0.20 -0.0
1,239,181 - Psyr_1096 0.20 -0.9
1,239,181 - Psyr_1096 0.20 -0.6
1,239,181 - Psyr_1096 0.20 +1.8
1,239,181 - Psyr_1096 0.20 -0.9
1,239,181 - Psyr_1096 0.20 +0.5
1,239,181 - Psyr_1096 0.20 -0.6
1,239,433 + Psyr_1096 0.29 -0.3
1,239,435 + Psyr_1096 0.29 -1.5
1,239,435 + Psyr_1096 0.29 -1.8
1,239,435 + Psyr_1096 0.29 +1.8
1,239,435 + Psyr_1096 0.29 -0.4
1,239,435 + Psyr_1096 0.29 +0.3
1,239,436 - Psyr_1096 0.29 +0.4
1,239,436 - Psyr_1096 0.29 +0.0
1,239,436 - Psyr_1096 0.29 -0.0
1,239,436 - Psyr_1096 0.29 +1.0
1,239,436 - Psyr_1096 0.29 -0.6
1,239,436 - Psyr_1096 0.29 +0.1
1,239,436 - Psyr_1096 0.29 -0.6
1,239,436 - Psyr_1096 0.29 -1.4
1,239,436 - Psyr_1096 0.29 -0.1
1,239,436 - Psyr_1096 0.29 -2.2
1,239,514 - Psyr_1096 0.32 -1.2
1,239,514 - Psyr_1096 0.32 +0.4

Or see this region's nucleotide sequence