Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1010

Experiment: KB with Nitrofurantoin 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 125 ug/ml
1,143,461	+				-0.5
1,143,461	+				+0.8
1,143,461	+				+0.5
1,143,462	-				+0.4
1,143,462	-				-0.2
1,143,462	-				-0.4
1,143,462	-				+0.8
1,143,462	-				-0.5
1,143,462	-				+0.4
1,143,462	-				+0.2
1,143,525	+		Psyr_1008	0.11	+1.1
1,143,525	+		Psyr_1008	0.11	+0.1
1,143,667	+		Psyr_1008	0.74	+0.0
1,143,775	+				-1.2
1,143,799	-				+0.2
1,143,799	-				-0.3
1,143,855	+				+0.5
1,143,855	+				-0.4
1,143,855	+				-0.2
1,143,855	+				-0.4
1,143,856	-				-0.3
1,143,856	-				-0.4
1,143,856	-				-0.4
1,143,856	-				-1.0
1,143,856	-				-0.2
1,143,856	-				+0.4
1,143,858	-				-1.2
1,143,919	-		Psyr_1009	0.21	-0.4
1,143,979	+		Psyr_1009	0.33	+0.4
1,143,979	+		Psyr_1009	0.33	+0.4
1,144,029	+		Psyr_1009	0.43	+0.4
1,144,315	+				+0.5
1,144,316	-				-0.6
1,144,402	+				+0.2
1,144,403	-				+1.0
1,144,403	-				+0.0
1,144,589	+		Psyr_1010	0.31	-0.9
1,144,589	+		Psyr_1010	0.31	-0.2
1,144,589	+		Psyr_1010	0.31	+0.3
1,144,611	+		Psyr_1010	0.36	+0.1
1,144,612	-		Psyr_1010	0.36	-0.7
1,144,612	-		Psyr_1010	0.36	-0.1
1,144,612	-		Psyr_1010	0.36	-1.3
1,144,692	-		Psyr_1010	0.52	-0.7
1,144,692	-		Psyr_1010	0.52	+0.1
1,144,705	+		Psyr_1010	0.55	-2.5
1,144,796	-		Psyr_1010	0.74	-0.1
1,144,796	-		Psyr_1010	0.74	-0.5
1,144,842	+		Psyr_1010	0.83	+0.3
1,144,843	-		Psyr_1010	0.83	-0.5
1,144,843	-		Psyr_1010	0.83	-2.4
1,144,843	-		Psyr_1010	0.83	-0.4
1,144,867	+		Psyr_1010	0.88	-0.6
1,144,868	-		Psyr_1010	0.88	-1.1
1,144,939	+				-0.2
1,144,946	+				+0.1
1,144,946	+				-0.3
1,144,946	+				+2.0
1,144,947	-				+0.1
1,144,947	-				+0.8
1,144,947	-				-0.1
1,145,006	+				+0.0
1,145,007	-				-1.5
1,145,009	+				-1.3
1,145,010	-				+0.8
1,145,258	+		Psyr_1011	0.16	+1.4
1,145,259	-		Psyr_1011	0.16	-0.4
1,145,643	-		Psyr_1011	0.51	-0.3
1,145,772	+		Psyr_1011	0.62	+0.6
1,145,772	+		Psyr_1011	0.62	+0.0
1,145,773	-		Psyr_1011	0.63	-1.5
1,145,847	-		Psyr_1011	0.69	-0.1