Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0730 and Psyr_0731 overlap by 4 nucleotides Psyr_0731 and Psyr_0732 are separated by 60 nucleotides Psyr_0732 and Psyr_0733 overlap by 8 nucleotides Psyr_0733 and Psyr_0734 are separated by 430 nucleotides
Psyr_0730: Psyr_0730 - CDS, at 837,051 to 837,347
_0730
Psyr_0731: Psyr_0731 - CDS, at 837,344 to 838,102
_0731
Psyr_0732: Psyr_0732 - CDS, at 838,163 to 838,300
_0732
Psyr_0733: Psyr_0733 - Relaxase, at 838,293 to 839,249
_0733
Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123
_0734
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 837.593 kb on + strand, within Psyr_0731 at 837.593 kb on + strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.594 kb on - strand, within Psyr_0731 at 837.627 kb on - strand, within Psyr_0731 at 837.627 kb on - strand, within Psyr_0731 at 837.627 kb on - strand, within Psyr_0731 at 838.003 kb on + strand, within Psyr_0731 at 838.037 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.135 kb on - strand at 838.294 kb on + strand at 838.295 kb on - strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.343 kb on + strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.344 kb on - strand at 838.360 kb on - strand at 838.360 kb on - strand at 838.360 kb on - strand at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.508 kb on + strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.509 kb on - strand, within Psyr_0733 at 838.597 kb on + strand, within Psyr_0733 at 838.689 kb on + strand, within Psyr_0733 at 838.689 kb on + strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.726 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.763 kb on - strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.964 kb on - strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.249 kb on + strand at 839.249 kb on + strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.293 kb on - strand at 839.293 kb on - strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.339 kb on + strand at 839.339 kb on + strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.347 kb on + strand at 839.348 kb on - strand at 839.348 kb on - strand at 839.433 kb on - strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.444 kb on - strand at 839.486 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.542 kb on - strand at 839.599 kb on + strand at 839.992 kb on - strand, within Psyr_0734 at 839.997 kb on + strand, within Psyr_0734 at 839.998 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 837,593 + Psyr_0731 0.33 +0.4 837,593 + Psyr_0731 0.33 -0.8 837,594 - Psyr_0731 0.33 +0.8 837,594 - Psyr_0731 0.33 -0.9 837,594 - Psyr_0731 0.33 +0.5 837,594 - Psyr_0731 0.33 +0.1 837,594 - Psyr_0731 0.33 -0.4 837,594 - Psyr_0731 0.33 +0.7 837,594 - Psyr_0731 0.33 -2.0 837,627 - Psyr_0731 0.37 +1.3 837,627 - Psyr_0731 0.37 -0.3 837,627 - Psyr_0731 0.37 +0.3 838,003 + Psyr_0731 0.87 -0.5 838,037 - -1.6 838,135 - +0.1 838,135 - +2.6 838,135 - -0.0 838,135 - +0.8 838,135 - -1.4 838,135 - -0.0 838,135 - +0.1 838,135 - +0.5 838,135 - -0.4 838,135 - -0.9 838,135 - -0.9 838,294 + +0.1 838,295 - -1.0 838,343 + -0.1 838,343 + +1.2 838,343 + -0.0 838,343 + -0.5 838,343 + -0.3 838,344 - -0.4 838,344 - +1.1 838,344 - +0.1 838,344 - -0.6 838,344 - +1.1 838,344 - +0.7 838,344 - -0.0 838,344 - +1.2 838,360 - +0.3 838,360 - -1.1 838,360 - -0.1 838,508 + Psyr_0733 0.22 -0.8 838,508 + Psyr_0733 0.22 +1.2 838,508 + Psyr_0733 0.22 -0.4 838,508 + Psyr_0733 0.22 +1.0 838,508 + Psyr_0733 0.22 +0.0 838,508 + Psyr_0733 0.22 +1.8 838,509 - Psyr_0733 0.23 -0.4 838,509 - Psyr_0733 0.23 -0.5 838,509 - Psyr_0733 0.23 +1.7 838,509 - Psyr_0733 0.23 -0.8 838,509 - Psyr_0733 0.23 +0.3 838,509 - Psyr_0733 0.23 -0.8 838,597 + Psyr_0733 0.32 +0.1 838,689 + Psyr_0733 0.41 -0.5 838,689 + Psyr_0733 0.41 +0.4 838,690 - Psyr_0733 0.41 -0.2 838,690 - Psyr_0733 0.41 -0.8 838,690 - Psyr_0733 0.41 -0.8 838,690 - Psyr_0733 0.41 +1.2 838,690 - Psyr_0733 0.41 +0.4 838,690 - Psyr_0733 0.41 +1.6 838,690 - Psyr_0733 0.41 +0.8 838,699 + Psyr_0733 0.42 -1.9 838,699 + Psyr_0733 0.42 -0.4 838,699 + -0.2 838,699 + Psyr_0733 0.42 +0.2 838,699 + Psyr_0733 0.42 -0.8 838,699 + Psyr_0733 0.42 +0.5 838,700 - Psyr_0733 0.43 -0.2 838,700 - Psyr_0733 0.43 +1.3 838,700 - Psyr_0733 0.43 -1.5 838,700 - Psyr_0733 0.43 +0.7 838,726 - Psyr_0733 0.45 +1.6 838,751 - Psyr_0733 0.48 -2.5 838,751 - Psyr_0733 0.48 -0.7 838,751 - Psyr_0733 0.48 -1.5 838,763 - Psyr_0733 0.49 +1.4 838,830 + Psyr_0733 0.56 -0.8 838,830 + Psyr_0733 0.56 -1.0 838,939 + Psyr_0733 0.68 +0.8 838,939 + Psyr_0733 0.68 -0.2 838,940 - Psyr_0733 0.68 -0.2 838,940 - Psyr_0733 0.68 +0.8 838,940 - Psyr_0733 0.68 -0.8 838,940 - Psyr_0733 0.68 -0.5 838,964 - Psyr_0733 0.70 -0.7 839,005 + Psyr_0733 0.74 +0.4 839,005 + Psyr_0733 0.74 +1.5 839,005 + Psyr_0733 0.74 +0.1 839,005 + Psyr_0733 0.74 +0.1 839,006 - Psyr_0733 0.75 -1.5 839,006 - Psyr_0733 0.75 +0.7 839,077 + Psyr_0733 0.82 -0.3 839,077 + Psyr_0733 0.82 +0.2 839,077 + Psyr_0733 0.82 -1.8 839,077 + Psyr_0733 0.82 +0.6 839,077 + Psyr_0733 0.82 +0.8 839,077 + Psyr_0733 0.82 -0.4 839,077 + Psyr_0733 0.82 +0.8 839,077 + Psyr_0733 0.82 -2.2 839,249 + -2.2 839,249 + +1.4 839,250 - -1.8 839,250 - -2.2 839,250 - +0.3 839,250 - -0.2 839,250 - -0.8 839,250 - -1.0 839,252 - -0.5 839,252 - +0.8 839,252 - +0.1 839,252 - -2.2 839,252 - -1.8 839,252 - -0.9 839,252 - +1.2 839,252 - +0.8 839,252 - -0.0 839,252 - -0.3 839,252 - +0.8 839,252 - -1.0 839,252 - -0.8 839,252 - -1.1 839,252 - -0.1 839,291 - +0.8 839,291 - -0.1 839,291 - -0.6 839,291 - -0.2 839,291 - +0.1 839,291 - -1.6 839,291 - -0.6 839,291 - +0.5 839,291 - -1.2 839,291 - -0.1 839,293 - -0.6 839,293 - -0.2 839,319 + -0.9 839,319 + -2.3 839,319 + +0.0 839,319 + -0.2 839,319 + -1.7 839,319 + -0.9 839,319 + -0.0 839,319 + -1.0 839,319 + -0.2 839,319 + -0.3 839,319 + -1.2 839,319 + -0.7 839,319 + -1.0 839,339 + -0.2 839,339 + +1.6 839,340 - +0.5 839,340 - -2.2 839,340 - -0.0 839,341 + -0.8 839,341 + -3.0 839,341 + -0.6 839,341 + +0.5 839,341 + +1.2 839,341 + +1.1 839,341 + +0.3 839,341 + +0.3 839,341 + +0.1 839,342 - -0.3 839,342 - -0.1 839,342 - +0.5 839,342 - +0.8 839,347 + -1.8 839,348 - -0.8 839,348 - -1.5 839,433 - -1.0 839,439 + -0.9 839,439 + -1.4 839,439 + -0.9 839,439 + -0.2 839,444 - -0.9 839,486 + -1.5 839,541 + -2.5 839,541 + -1.3 839,541 + -1.5 839,542 - +0.4 839,599 + +0.1 839,992 - Psyr_0734 0.70 -0.0 839,997 + Psyr_0734 0.71 -0.0 839,998 - Psyr_0734 0.72 -0.8 840,012 - Psyr_0734 0.75 -1.2 840,012 - Psyr_0734 0.75 +0.2 840,012 - Psyr_0734 0.75 -1.4 840,012 - Psyr_0734 0.75 +0.4 840,012 - Psyr_0734 0.75 -0.3
Or see this region's nucleotide sequence