Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0682

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0681 and Psyr_0682 overlap by 4 nucleotidesPsyr_0682 and Psyr_0683 are separated by 120 nucleotidesPsyr_0683 and Psyr_0684 are separated by 96 nucleotides Psyr_0681: Psyr_0681 - DNA helicase/exodeoxyribonuclease V, beta subunit, at 781,010 to 784,702 _0681 Psyr_0682: Psyr_0682 - DNA helicase/exodeoxyribonuclease V, alpha subunit, at 784,699 to 786,792 _0682 Psyr_0683: Psyr_0683 - NUDIX hydrolase, at 786,913 to 787,317 _0683 Psyr_0684: Psyr_0684 - hypothetical protein, at 787,414 to 787,830 _0684 Position (kb) 784 785 786 787Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 784.479 kb on - strandat 786.836 kb on + strandat 786.836 kb on + strandat 786.837 kb on - strandat 786.837 kb on - strandat 786.837 kb on - strandat 786.854 kb on - strandat 786.860 kb on + strandat 786.906 kb on + strandat 786.906 kb on + strandat 786.906 kb on + strandat 786.907 kb on - strandat 787.062 kb on - strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.273 kb on - strand, within Psyr_0683at 787.273 kb on - strand, within Psyr_0683at 787.273 kb on - strand, within Psyr_0683at 787.311 kb on + strandat 787.311 kb on + strandat 787.312 kb on - strandat 787.343 kb on + strandat 787.343 kb on + strandat 787.343 kb on + strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.369 kb on + strandat 787.370 kb on - strandat 787.370 kb on - strandat 787.370 kb on - strandat 787.498 kb on - strand, within Psyr_0684at 787.514 kb on + strand, within Psyr_0684at 787.514 kb on + strand, within Psyr_0684at 787.514 kb on + strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.573 kb on - strand, within Psyr_0684at 787.597 kb on - strand, within Psyr_0684at 787.620 kb on + strand, within Psyr_0684at 787.620 kb on + strand, within Psyr_0684at 787.620 kb on + strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.691 kb on - strand, within Psyr_0684at 787.691 kb on - strand, within Psyr_0684at 787.694 kb on + strand, within Psyr_0684at 787.695 kb on - strand, within Psyr_0684at 787.725 kb on - strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.750 kb on + strand, within Psyr_0684at 787.750 kb on + strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.755 kb on - strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.789 kb on - strandat 787.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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784,479 - +0.3
786,836 + +0.8
786,836 + -0.5
786,837 - +0.2
786,837 - +0.1
786,837 - +0.6
786,854 - -2.1
786,860 + +1.0
786,906 + -1.1
786,906 + +1.9
786,906 + +1.1
786,907 - +1.1
787,062 - Psyr_0683 0.37 +0.7
787,134 + Psyr_0683 0.55 +0.1
787,134 + Psyr_0683 0.55 -0.5
787,134 + Psyr_0683 0.55 -1.4
787,134 + Psyr_0683 0.55 -1.1
787,134 + Psyr_0683 0.55 +1.1
787,134 + Psyr_0683 0.55 +0.3
787,134 + Psyr_0683 0.55 +0.3
787,134 + Psyr_0683 0.55 +0.2
787,134 + Psyr_0683 0.55 +1.0
787,134 + Psyr_0683 0.55 -0.7
787,134 + Psyr_0683 0.55 -0.1
787,134 + Psyr_0683 0.55 +0.4
787,134 + Psyr_0683 0.55 +1.0
787,134 + Psyr_0683 0.55 -0.9
787,134 + Psyr_0683 0.55 -0.7
787,134 + Psyr_0683 0.55 +0.2
787,134 + Psyr_0683 0.55 -0.6
787,134 + Psyr_0683 0.55 +0.6
787,134 + Psyr_0683 0.55 -0.0
787,135 - Psyr_0683 0.55 -0.0
787,135 - Psyr_0683 0.55 +0.7
787,135 - Psyr_0683 0.55 -0.1
787,135 - Psyr_0683 0.55 +1.1
787,135 - Psyr_0683 0.55 -0.5
787,135 - Psyr_0683 0.55 +1.4
787,135 - Psyr_0683 0.55 -0.1
787,135 - Psyr_0683 0.55 -0.3
787,135 - Psyr_0683 0.55 +0.5
787,135 - Psyr_0683 0.55 -0.9
787,135 - Psyr_0683 0.55 +0.2
787,135 - Psyr_0683 0.55 +1.6
787,135 - Psyr_0683 0.55 +0.5
787,135 - Psyr_0683 0.55 +1.9
787,135 - Psyr_0683 0.55 -0.9
787,135 - Psyr_0683 0.55 +0.0
787,135 - Psyr_0683 0.55 +0.6
787,135 - Psyr_0683 0.55 +0.9
787,273 - Psyr_0683 0.89 -0.6
787,273 - Psyr_0683 0.89 +0.1
787,273 - Psyr_0683 0.89 -0.6
787,311 + +0.9
787,311 + -0.3
787,312 - -1.1
787,343 + +0.9
787,343 + -0.3
787,343 + +0.9
787,344 - +0.5
787,344 - -0.7
787,344 - +0.9
787,344 - +0.1
787,344 - +0.3
787,369 + -0.5
787,370 - +0.7
787,370 - +1.3
787,370 - -1.5
787,498 - Psyr_0684 0.20 +0.2
787,514 + Psyr_0684 0.24 -1.9
787,514 + Psyr_0684 0.24 +0.1
787,514 + Psyr_0684 0.24 -0.4
787,515 - Psyr_0684 0.24 -0.3
787,515 - Psyr_0684 0.24 +0.4
787,515 - Psyr_0684 0.24 -1.9
787,515 - Psyr_0684 0.24 -0.3
787,515 - Psyr_0684 0.24 -0.7
787,573 - Psyr_0684 0.38 +0.3
787,597 - Psyr_0684 0.44 +0.4
787,620 + Psyr_0684 0.49 -0.9
787,620 + Psyr_0684 0.49 -1.0
787,620 + Psyr_0684 0.49 +0.9
787,621 - Psyr_0684 0.50 -0.6
787,621 - Psyr_0684 0.50 +0.4
787,621 - Psyr_0684 0.50 -1.0
787,621 - Psyr_0684 0.50 +0.4
787,621 - Psyr_0684 0.50 +0.6
787,691 - Psyr_0684 0.66 +0.1
787,691 - Psyr_0684 0.66 +0.9
787,694 + Psyr_0684 0.67 -1.1
787,695 - Psyr_0684 0.67 -1.0
787,725 - Psyr_0684 0.75 +0.9
787,727 + Psyr_0684 0.75 -0.1
787,727 + Psyr_0684 0.75 -1.5
787,727 + Psyr_0684 0.75 -3.4
787,727 + Psyr_0684 0.75 +0.9
787,728 - Psyr_0684 0.75 -0.6
787,728 - Psyr_0684 0.75 -2.7
787,728 - Psyr_0684 0.75 -0.1
787,728 - Psyr_0684 0.75 +1.0
787,728 - Psyr_0684 0.75 -0.6
787,728 - Psyr_0684 0.75 -0.7
787,728 - Psyr_0684 0.75 -0.4
787,750 + Psyr_0684 0.81 +0.3
787,750 + Psyr_0684 0.81 -0.5
787,751 - Psyr_0684 0.81 +1.9
787,751 - Psyr_0684 0.81 +0.2
787,751 - Psyr_0684 0.81 -0.2
787,751 - Psyr_0684 0.81 -0.6
787,751 - Psyr_0684 0.81 +0.9
787,754 + Psyr_0684 0.82 -0.6
787,754 + Psyr_0684 0.82 -0.6
787,754 + Psyr_0684 0.82 -0.7
787,754 + Psyr_0684 0.82 -2.1
787,755 - Psyr_0684 0.82 +0.1
787,786 + Psyr_0684 0.89 +0.9
787,786 + Psyr_0684 0.89 -2.5
787,786 + Psyr_0684 0.89 +0.9
787,786 + Psyr_0684 0.89 -0.6
787,787 - Psyr_0684 0.89 +0.0
787,787 - Psyr_0684 0.89 +0.7
787,787 - Psyr_0684 0.89 +0.2
787,787 - Psyr_0684 0.89 +0.5
787,789 - -0.4
787,789 - -0.3

Or see this region's nucleotide sequence