Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0649 and Psyr_0650 are separated by 244 nucleotides Psyr_0650 and Psyr_0651 are separated by 606 nucleotides Psyr_0651 and Psyr_0652 are separated by 59 nucleotides
Psyr_0649: Psyr_0649 - transcriptional regulator, AraC family, at 737,097 to 737,900
_0649
Psyr_0650: Psyr_0650 - Protein of unknown function RIO1, at 738,145 to 739,041
_0650
Psyr_0651: Psyr_0651 - Helix-turn-helix, Fis-type, at 739,648 to 739,947
_0651
Psyr_0652: Psyr_0652 - Integrase, catalytic region, at 740,007 to 740,789
_0652
Position (kb) 738
739
740 Strain fitness (log2 ratio) -2
-1
0
1
2 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.182 kb on - strand, within Psyr_0649 at 737.182 kb on - strand, within Psyr_0649 at 737.182 kb on - strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.898 kb on + strand at 737.898 kb on + strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.935 kb on - strand at 737.935 kb on - strand at 737.955 kb on + strand at 737.955 kb on + strand at 737.955 kb on + strand at 737.955 kb on + strand at 737.956 kb on - strand at 737.956 kb on - strand at 737.956 kb on - strand at 737.956 kb on - strand at 737.974 kb on + strand at 737.975 kb on - strand at 738.009 kb on + strand at 738.094 kb on - strand at 738.136 kb on + strand at 738.156 kb on + strand at 738.157 kb on - strand at 738.238 kb on + strand, within Psyr_0650 at 738.238 kb on + strand, within Psyr_0650 at 738.238 kb on + strand, within Psyr_0650 at 738.238 kb on + strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.239 kb on - strand, within Psyr_0650 at 738.280 kb on + strand, within Psyr_0650 at 738.280 kb on + strand, within Psyr_0650 at 738.280 kb on + strand, within Psyr_0650 at 738.281 kb on - strand, within Psyr_0650 at 738.515 kb on + strand, within Psyr_0650 at 738.515 kb on + strand, within Psyr_0650 at 738.526 kb on + strand, within Psyr_0650 at 738.778 kb on + strand, within Psyr_0650 at 738.778 kb on + strand, within Psyr_0650 at 738.779 kb on - strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.841 kb on + strand, within Psyr_0650 at 738.841 kb on + strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.923 kb on + strand, within Psyr_0650 at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.251 kb on + strand at 739.251 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.318 kb on + strand at 739.318 kb on + strand at 739.319 kb on - strand at 739.319 kb on - strand at 739.389 kb on + strand at 739.389 kb on + strand at 739.389 kb on + strand at 739.390 kb on - strand at 739.393 kb on + strand at 739.393 kb on + strand at 739.393 kb on + strand at 739.533 kb on + strand at 739.533 kb on + strand at 739.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 737,181 + Psyr_0649 0.10 +0.1 737,181 + Psyr_0649 0.10 -0.4 737,181 + Psyr_0649 0.10 +1.0 737,181 + Psyr_0649 0.10 +0.1 737,181 + Psyr_0649 0.10 +0.7 737,182 - Psyr_0649 0.11 -1.1 737,182 - Psyr_0649 0.11 +0.8 737,182 - Psyr_0649 0.11 +0.0 737,388 + Psyr_0649 0.36 -0.0 737,388 + Psyr_0649 0.36 +0.5 737,388 + Psyr_0649 0.36 +2.3 737,388 + Psyr_0649 0.36 +0.2 737,388 + Psyr_0649 0.36 -1.1 737,388 + Psyr_0649 0.36 +0.7 737,389 - Psyr_0649 0.36 +0.2 737,389 - Psyr_0649 0.36 +0.6 737,389 - Psyr_0649 0.36 +0.5 737,389 - Psyr_0649 0.36 -0.3 737,389 - Psyr_0649 0.36 +0.6 737,389 - Psyr_0649 0.36 -0.7 737,389 - Psyr_0649 0.36 +0.7 737,389 - Psyr_0649 0.36 -0.3 737,389 - Psyr_0649 0.36 -1.3 737,898 + -1.2 737,898 + +0.5 737,899 - +0.9 737,899 - +0.5 737,899 - +0.5 737,899 - +0.9 737,899 - -0.0 737,899 - +0.2 737,934 + +0.3 737,934 + +0.5 737,934 + -0.1 737,934 + -1.1 737,934 + -0.1 737,935 - -0.7 737,935 - -0.8 737,955 + -0.9 737,955 + -1.0 737,955 + -0.5 737,955 + +0.7 737,956 - -0.7 737,956 - +0.2 737,956 - -0.0 737,956 - -1.1 737,974 + +0.7 737,975 - +1.3 738,009 + -0.8 738,094 - +0.1 738,136 + +0.5 738,156 + +0.4 738,157 - -1.0 738,238 + Psyr_0650 0.10 -0.4 738,238 + Psyr_0650 0.10 -1.4 738,238 + Psyr_0650 0.10 -0.3 738,238 + Psyr_0650 0.10 -0.7 738,239 - Psyr_0650 0.10 +0.2 738,239 - Psyr_0650 0.10 -1.9 738,239 - Psyr_0650 0.10 -2.7 738,239 - Psyr_0650 0.10 -1.0 738,239 - Psyr_0650 0.10 -0.7 738,239 - Psyr_0650 0.10 -0.3 738,239 - Psyr_0650 0.10 -0.7 738,280 + Psyr_0650 0.15 -1.7 738,280 + Psyr_0650 0.15 -0.8 738,280 + Psyr_0650 0.15 -0.1 738,281 - Psyr_0650 0.15 +0.2 738,515 + Psyr_0650 0.41 +0.2 738,515 + Psyr_0650 0.41 +0.5 738,526 + Psyr_0650 0.42 +0.3 738,778 + Psyr_0650 0.71 -0.2 738,778 + Psyr_0650 0.71 -1.1 738,779 - Psyr_0650 0.71 -0.7 738,817 + Psyr_0650 0.75 +1.2 738,817 + Psyr_0650 0.75 +0.2 738,817 + Psyr_0650 0.75 +0.2 738,818 - Psyr_0650 0.75 -0.6 738,818 - Psyr_0650 0.75 -2.0 738,818 - Psyr_0650 0.75 +0.8 738,838 + Psyr_0650 0.77 -0.4 738,838 + Psyr_0650 0.77 -1.6 738,838 + Psyr_0650 0.77 +0.9 738,839 - Psyr_0650 0.77 +0.4 738,839 - Psyr_0650 0.77 +1.0 738,839 - Psyr_0650 0.77 +0.3 738,839 - Psyr_0650 0.77 -0.6 738,841 + Psyr_0650 0.78 -0.1 738,841 + Psyr_0650 0.78 +0.4 738,842 - Psyr_0650 0.78 -0.6 738,842 - Psyr_0650 0.78 +0.8 738,842 - Psyr_0650 0.78 +1.1 738,923 + Psyr_0650 0.87 -1.0 739,151 + +0.2 739,151 + +0.9 739,151 + -0.8 739,151 + -0.7 739,151 + -0.6 739,151 + -0.3 739,251 + +0.6 739,251 + +0.4 739,291 + -0.0 739,291 + -0.7 739,291 + +0.9 739,291 + +0.0 739,292 - -1.4 739,292 - +0.9 739,292 - -0.5 739,292 - -0.1 739,292 - +0.9 739,318 + -1.1 739,318 + +0.1 739,319 - +0.2 739,319 - +0.3 739,389 + +0.6 739,389 + -0.1 739,389 + +0.5 739,390 - -0.3 739,393 + +0.1 739,393 + +1.0 739,393 + -0.2 739,533 + -0.1 739,533 + +1.9 739,590 - -1.2
Or see this region's nucleotide sequence