Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0627

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0625 and Psyr_0626 are separated by 3 nucleotidesPsyr_0626 and Psyr_0627 are separated by 241 nucleotidesPsyr_0627 and Psyr_0628 are separated by 11 nucleotides Psyr_0625: Psyr_0625 - Protein of unknown function DUF980, at 714,416 to 715,225 _0625 Psyr_0626: Psyr_0626 - DedA, at 715,229 to 715,876 _0626 Psyr_0627: Psyr_0627 - Ethanolamine ammonia-lyase light chain, at 716,118 to 716,966 _0627 Psyr_0628: Psyr_0628 - Ethanolamine ammonia-lyase heavy chain, at 716,978 to 718,372 _0628 Position (kb) 716 717Strain fitness (log2 ratio) -2 -1 0 1 2at 715.133 kb on - strand, within Psyr_0625at 715.160 kb on + strandat 715.160 kb on + strandat 715.160 kb on + strandat 715.268 kb on + strandat 715.268 kb on + strandat 715.527 kb on + strand, within Psyr_0626at 715.528 kb on - strand, within Psyr_0626at 715.552 kb on - strand, within Psyr_0626at 715.552 kb on - strand, within Psyr_0626at 715.552 kb on - strand, within Psyr_0626at 715.552 kb on - strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.794 kb on + strand, within Psyr_0626at 715.795 kb on - strand, within Psyr_0626at 715.804 kb on + strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.809 kb on + strand, within Psyr_0626at 715.809 kb on + strand, within Psyr_0626at 715.809 kb on + strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.852 kb on + strandat 715.852 kb on + strandat 715.853 kb on - strandat 715.853 kb on - strandat 715.939 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.974 kb on - strandat 716.003 kb on + strandat 716.003 kb on + strandat 716.004 kb on - strandat 716.004 kb on - strandat 716.035 kb on + strandat 716.035 kb on + strandat 716.036 kb on - strandat 716.036 kb on - strandat 716.049 kb on + strandat 716.102 kb on + strandat 716.102 kb on + strandat 716.103 kb on - strandat 716.269 kb on + strand, within Psyr_0627at 716.269 kb on + strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.327 kb on + strand, within Psyr_0627at 716.327 kb on + strand, within Psyr_0627at 716.327 kb on + strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.368 kb on + strand, within Psyr_0627at 716.368 kb on + strand, within Psyr_0627at 716.368 kb on + strand, within Psyr_0627at 716.368 kb on + strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.378 kb on - strand, within Psyr_0627at 716.611 kb on - strand, within Psyr_0627at 716.611 kb on - strand, within Psyr_0627at 716.648 kb on - strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.711 kb on - strand, within Psyr_0627at 716.711 kb on - strand, within Psyr_0627at 716.711 kb on - strand, within Psyr_0627at 716.955 kb on + strandat 716.955 kb on + strandat 716.955 kb on + strandat 716.955 kb on + strandat 716.956 kb on - strandat 716.956 kb on - strandat 716.956 kb on - strandat 716.956 kb on - strandat 716.956 kb on - strandat 716.956 kb on - strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.985 kb on - strandat 716.985 kb on - strandat 716.985 kb on - strandat 716.985 kb on - strandat 717.088 kb on - strandat 717.156 kb on + strand, within Psyr_0628at 717.156 kb on + strand, within Psyr_0628at 717.156 kb on + strand, within Psyr_0628at 717.157 kb on - strand, within Psyr_0628at 717.157 kb on - strand, within Psyr_0628at 717.274 kb on - strand, within Psyr_0628at 717.360 kb on + strand, within Psyr_0628at 717.360 kb on + strand, within Psyr_0628at 717.360 kb on + strand, within Psyr_0628at 717.361 kb on - strand, within Psyr_0628at 717.361 kb on - strand, within Psyr_0628at 717.361 kb on - strand, within Psyr_0628at 717.361 kb on - strand, within Psyr_0628at 717.433 kb on - strand, within Psyr_0628at 717.513 kb on + strand, within Psyr_0628at 717.513 kb on + strand, within Psyr_0628at 717.513 kb on + strand, within Psyr_0628at 717.514 kb on - strand, within Psyr_0628at 717.514 kb on - strand, within Psyr_0628at 717.565 kb on - strand, within Psyr_0628at 717.716 kb on + strand, within Psyr_0628at 717.716 kb on + strand, within Psyr_0628at 717.717 kb on - strand, within Psyr_0628at 717.823 kb on - strand, within Psyr_0628

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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715,133 - Psyr_0625 0.89 -0.2
715,160 + +0.5
715,160 + +0.4
715,160 + -0.8
715,268 + -0.1
715,268 + +1.1
715,527 + Psyr_0626 0.46 +0.7
715,528 - Psyr_0626 0.46 +0.9
715,552 - Psyr_0626 0.50 +0.0
715,552 - Psyr_0626 0.50 +2.0
715,552 - Psyr_0626 0.50 +0.3
715,552 - Psyr_0626 0.50 +0.3
715,620 + Psyr_0626 0.60 -2.0
715,620 + Psyr_0626 0.60 +2.5
715,620 + Psyr_0626 0.60 -0.7
715,620 + Psyr_0626 0.60 -1.1
715,620 + Psyr_0626 0.60 -0.5
715,620 + Psyr_0626 0.60 +0.2
715,620 + Psyr_0626 0.60 +0.1
715,620 + Psyr_0626 0.60 +0.6
715,620 + Psyr_0626 0.60 +0.8
715,621 - Psyr_0626 0.60 +1.6
715,621 - Psyr_0626 0.60 +0.9
715,621 - Psyr_0626 0.60 +0.6
715,621 - Psyr_0626 0.60 +1.4
715,621 - Psyr_0626 0.60 +0.7
715,621 - Psyr_0626 0.60 -2.5
715,621 - Psyr_0626 0.60 +0.4
715,621 - Psyr_0626 0.60 +0.3
715,621 - Psyr_0626 0.60 +0.4
715,621 - Psyr_0626 0.60 -0.1
715,621 - Psyr_0626 0.60 -1.6
715,794 + Psyr_0626 0.87 -0.7
715,795 - Psyr_0626 0.87 +0.4
715,804 + Psyr_0626 0.89 +0.2
715,805 - Psyr_0626 0.89 -0.2
715,805 - Psyr_0626 0.89 +0.7
715,805 - Psyr_0626 0.89 +2.1
715,805 - Psyr_0626 0.89 +2.1
715,805 - Psyr_0626 0.89 +0.9
715,805 - Psyr_0626 0.89 -0.8
715,805 - Psyr_0626 0.89 +1.5
715,809 + Psyr_0626 0.90 +0.5
715,809 + Psyr_0626 0.90 +0.1
715,809 + Psyr_0626 0.90 +0.1
715,810 - Psyr_0626 0.90 +0.9
715,810 - Psyr_0626 0.90 +0.5
715,810 - Psyr_0626 0.90 +1.8
715,810 - Psyr_0626 0.90 +0.7
715,852 + +0.1
715,852 + +0.8
715,853 - +2.7
715,853 - +0.8
715,939 + -2.1
715,941 + -0.1
715,941 + -0.6
715,941 + -1.2
715,941 + -1.0
715,941 + +0.9
715,941 + -0.1
715,941 + +0.2
715,941 + +0.7
715,941 + +0.5
715,941 + -1.6
715,941 + +0.4
715,941 + +0.6
715,941 + +1.1
715,941 + +0.2
715,941 + +1.3
715,942 - -1.5
715,942 - -1.0
715,942 - +0.2
715,942 - +0.5
715,942 - +0.4
715,942 - +0.6
715,942 - -0.1
715,942 - +0.0
715,942 - +0.0
715,942 - +0.9
715,942 - +0.4
715,942 - +0.4
715,942 - -0.4
715,974 - -1.2
716,003 + -0.5
716,003 + -0.3
716,004 - -0.1
716,004 - -0.9
716,035 + -0.4
716,035 + -2.3
716,036 - -2.3
716,036 - -1.9
716,049 + -0.4
716,102 + +1.6
716,102 + +0.9
716,103 - +1.6
716,269 + Psyr_0627 0.18 +0.1
716,269 + Psyr_0627 0.18 -0.2
716,270 - Psyr_0627 0.18 -0.6
716,270 - Psyr_0627 0.18 +0.1
716,270 - Psyr_0627 0.18 +0.3
716,270 - Psyr_0627 0.18 -0.2
716,270 - Psyr_0627 0.18 +0.8
716,327 + Psyr_0627 0.25 -0.2
716,327 + Psyr_0627 0.25 +0.3
716,327 + Psyr_0627 0.25 +1.1
716,328 - Psyr_0627 0.25 +2.5
716,328 - Psyr_0627 0.25 +0.1
716,328 - Psyr_0627 0.25 -0.4
716,328 - Psyr_0627 0.25 +1.6
716,328 - Psyr_0627 0.25 +0.5
716,328 - Psyr_0627 0.25 -0.0
716,368 + Psyr_0627 0.29 +0.6
716,368 + Psyr_0627 0.29 +0.7
716,368 + Psyr_0627 0.29 -0.4
716,368 + Psyr_0627 0.29 +1.6
716,369 - Psyr_0627 0.30 +2.1
716,369 - Psyr_0627 0.30 +1.5
716,369 - Psyr_0627 0.30 +1.1
716,369 - Psyr_0627 0.30 +1.0
716,369 - Psyr_0627 0.30 +1.4
716,377 + Psyr_0627 0.31 +0.4
716,377 + Psyr_0627 0.31 -1.4
716,377 + Psyr_0627 0.31 +0.4
716,377 + Psyr_0627 0.31 +0.6
716,378 - Psyr_0627 0.31 -1.8
716,611 - Psyr_0627 0.58 -0.1
716,611 - Psyr_0627 0.58 +1.0
716,648 - Psyr_0627 0.62 -0.4
716,710 + Psyr_0627 0.70 +1.5
716,710 + Psyr_0627 0.70 +0.3
716,710 + Psyr_0627 0.70 -1.7
716,710 + Psyr_0627 0.70 -0.5
716,710 + Psyr_0627 0.70 -0.0
716,710 + Psyr_0627 0.70 -0.8
716,710 + Psyr_0627 0.70 -0.8
716,710 + Psyr_0627 0.70 -0.0
716,711 - Psyr_0627 0.70 +0.5
716,711 - Psyr_0627 0.70 -0.4
716,711 - Psyr_0627 0.70 -0.5
716,955 + -1.1
716,955 + +0.2
716,955 + -1.0
716,955 + +0.2
716,956 - -0.4
716,956 - -0.1
716,956 - -0.6
716,956 - +0.0
716,956 - -0.7
716,956 - -0.2
716,984 + -1.3
716,984 + +1.6
716,984 + +0.6
716,984 + +0.4
716,984 + +0.2
716,984 + +0.1
716,984 + +0.3
716,984 + -0.7
716,985 - -0.3
716,985 - +0.3
716,985 - +0.3
716,985 - +0.5
717,088 - -0.1
717,156 + Psyr_0628 0.13 +0.2
717,156 + Psyr_0628 0.13 +1.4
717,156 + Psyr_0628 0.13 +0.2
717,157 - Psyr_0628 0.13 -0.4
717,157 - Psyr_0628 0.13 -0.3
717,274 - Psyr_0628 0.21 +1.1
717,360 + Psyr_0628 0.27 -0.3
717,360 + Psyr_0628 0.27 +0.3
717,360 + Psyr_0628 0.27 +0.6
717,361 - Psyr_0628 0.27 +0.2
717,361 - Psyr_0628 0.27 -0.3
717,361 - Psyr_0628 0.27 +0.0
717,361 - Psyr_0628 0.27 +0.6
717,433 - Psyr_0628 0.33 +0.9
717,513 + Psyr_0628 0.38 +1.1
717,513 + Psyr_0628 0.38 -1.1
717,513 + Psyr_0628 0.38 +0.9
717,514 - Psyr_0628 0.38 +1.2
717,514 - Psyr_0628 0.38 +1.2
717,565 - Psyr_0628 0.42 +0.5
717,716 + Psyr_0628 0.53 -0.2
717,716 + Psyr_0628 0.53 +1.1
717,717 - Psyr_0628 0.53 -1.2
717,823 - Psyr_0628 0.61 -0.3

Or see this region's nucleotide sequence