Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0587 and Psyr_0588 are separated by 507 nucleotides Psyr_0588 and Psyr_0589 are separated by 89 nucleotides
Psyr_0587: Psyr_0587 - Radical SAM, at 670,307 to 672,616
_0587
Psyr_0588: Psyr_0588 - Transglutaminase-like protein, at 673,124 to 676,402
_0588
Psyr_0589: Psyr_0589 - protein of unknown function DUF403:Protein of unknown function DUF404:Protein of unknown function DUF407, at 676,492 to 678,987
_0589
Position (kb) 673
674
675
676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 672.134 kb on + strand, within Psyr_0587 at 672.134 kb on + strand, within Psyr_0587 at 672.134 kb on + strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.359 kb on + strand, within Psyr_0587 at 672.359 kb on + strand, within Psyr_0587 at 672.359 kb on + strand, within Psyr_0587 at 672.360 kb on - strand, within Psyr_0587 at 672.360 kb on - strand, within Psyr_0587 at 672.360 kb on - strand, within Psyr_0587 at 672.360 kb on - strand, within Psyr_0587 at 672.663 kb on + strand at 672.663 kb on + strand at 672.663 kb on + strand at 672.663 kb on + strand at 672.663 kb on + strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.805 kb on - strand at 672.906 kb on - strand at 672.906 kb on - strand at 672.906 kb on - strand at 672.965 kb on + strand at 672.966 kb on - strand at 672.969 kb on - strand at 673.076 kb on + strand at 673.076 kb on + strand at 673.076 kb on + strand at 673.076 kb on + strand at 673.076 kb on + strand at 673.077 kb on - strand at 673.077 kb on - strand at 673.077 kb on - strand at 673.096 kb on + strand at 673.135 kb on + strand at 673.135 kb on + strand at 673.135 kb on + strand at 673.136 kb on - strand at 673.160 kb on + strand at 673.167 kb on - strand at 673.244 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.307 kb on + strand at 673.308 kb on - strand at 673.308 kb on - strand at 673.439 kb on + strand at 673.439 kb on + strand at 673.440 kb on - strand at 673.440 kb on - strand at 673.511 kb on + strand, within Psyr_0588 at 673.595 kb on + strand, within Psyr_0588 at 673.595 kb on + strand, within Psyr_0588 at 673.596 kb on - strand, within Psyr_0588 at 673.734 kb on - strand, within Psyr_0588 at 673.826 kb on + strand, within Psyr_0588 at 673.826 kb on + strand, within Psyr_0588 at 673.993 kb on + strand, within Psyr_0588 at 674.025 kb on - strand, within Psyr_0588 at 674.232 kb on - strand, within Psyr_0588 at 674.480 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.484 kb on - strand, within Psyr_0588 at 674.484 kb on - strand, within Psyr_0588 at 674.484 kb on - strand, within Psyr_0588 at 674.484 kb on - strand, within Psyr_0588 at 674.663 kb on + strand, within Psyr_0588 at 674.664 kb on - strand, within Psyr_0588 at 674.664 kb on - strand, within Psyr_0588 at 674.939 kb on + strand, within Psyr_0588 at 674.940 kb on - strand, within Psyr_0588 at 674.975 kb on + strand, within Psyr_0588 at 674.976 kb on - strand, within Psyr_0588 at 674.976 kb on - strand, within Psyr_0588 at 675.044 kb on + strand, within Psyr_0588 at 675.045 kb on - strand, within Psyr_0588 at 675.167 kb on + strand, within Psyr_0588 at 675.167 kb on + strand, within Psyr_0588 at 675.291 kb on + strand, within Psyr_0588 at 675.326 kb on + strand, within Psyr_0588 at 675.327 kb on - strand, within Psyr_0588 at 675.353 kb on + strand, within Psyr_0588 at 675.354 kb on - strand, within Psyr_0588 at 675.429 kb on - strand, within Psyr_0588 at 675.570 kb on - strand, within Psyr_0588 at 675.704 kb on + strand, within Psyr_0588 at 675.881 kb on + strand, within Psyr_0588 at 675.974 kb on + strand, within Psyr_0588 at 675.975 kb on - strand, within Psyr_0588 at 676.034 kb on + strand, within Psyr_0588 at 676.035 kb on - strand, within Psyr_0588 at 676.035 kb on - strand, within Psyr_0588 at 676.223 kb on + strand at 676.224 kb on - strand at 676.249 kb on + strand at 676.250 kb on - strand at 676.254 kb on - strand at 676.254 kb on - strand at 676.254 kb on - strand at 676.400 kb on + strand at 676.457 kb on - strand at 676.470 kb on + strand at 676.470 kb on + strand at 676.470 kb on + strand at 676.470 kb on + strand at 676.471 kb on - strand at 676.471 kb on - strand at 676.471 kb on - strand at 676.471 kb on - strand at 676.530 kb on + strand at 676.530 kb on + strand at 676.530 kb on + strand at 676.530 kb on + strand at 676.531 kb on - strand at 676.531 kb on - strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.535 kb on - strand at 676.535 kb on - strand at 676.535 kb on - strand at 676.535 kb on - strand at 676.535 kb on - strand at 676.589 kb on - strand at 676.675 kb on + strand at 676.675 kb on + strand at 676.675 kb on + strand at 676.675 kb on + strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.684 kb on + strand at 676.684 kb on + strand at 676.684 kb on + strand at 676.684 kb on + strand at 676.684 kb on + strand at 676.685 kb on - strand at 676.685 kb on - strand at 676.685 kb on - strand at 676.685 kb on - strand at 676.685 kb on - strand at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 677.204 kb on - strand, within Psyr_0589 at 677.204 kb on - strand at 677.218 kb on + strand, within Psyr_0589 at 677.219 kb on - strand, within Psyr_0589 at 677.219 kb on - strand, within Psyr_0589 at 677.219 kb on - strand, within Psyr_0589 at 677.287 kb on + strand, within Psyr_0589 at 677.288 kb on - strand, within Psyr_0589
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 672,134 + Psyr_0587 0.79 -0.1 672,134 + Psyr_0587 0.79 -1.4 672,134 + Psyr_0587 0.79 +1.1 672,135 - Psyr_0587 0.79 +1.2 672,135 - Psyr_0587 0.79 -0.2 672,135 - Psyr_0587 0.79 +1.5 672,135 - Psyr_0587 0.79 +0.8 672,135 - Psyr_0587 0.79 +0.2 672,135 - Psyr_0587 0.79 -0.1 672,135 - Psyr_0587 0.79 +0.2 672,135 - Psyr_0587 0.79 +0.1 672,135 - Psyr_0587 0.79 -1.9 672,170 + Psyr_0587 0.81 +1.9 672,170 + Psyr_0587 0.81 +0.2 672,170 + Psyr_0587 0.81 -0.7 672,170 + Psyr_0587 0.81 -0.2 672,170 + Psyr_0587 0.81 -0.4 672,170 + Psyr_0587 0.81 -0.4 672,170 + Psyr_0587 0.81 -2.2 672,170 + Psyr_0587 0.81 +0.4 672,170 + Psyr_0587 0.81 -1.1 672,171 - Psyr_0587 0.81 -1.8 672,171 - Psyr_0587 0.81 +0.8 672,171 - Psyr_0587 0.81 +0.7 672,171 - Psyr_0587 0.81 +0.5 672,171 - Psyr_0587 0.81 -0.5 672,359 + Psyr_0587 0.89 -1.9 672,359 + Psyr_0587 0.89 +0.5 672,359 + Psyr_0587 0.89 +0.4 672,360 - Psyr_0587 0.89 +0.1 672,360 - Psyr_0587 0.89 -0.5 672,360 - Psyr_0587 0.89 -0.5 672,360 - Psyr_0587 0.89 -0.6 672,663 + +0.1 672,663 + -0.7 672,663 + +0.8 672,663 + +1.0 672,663 + +1.8 672,664 - +0.9 672,664 - -0.0 672,664 - +0.6 672,664 - +1.2 672,664 - -1.1 672,664 - -1.1 672,664 - +0.3 672,664 - -0.3 672,664 - +0.0 672,664 - +0.8 672,667 + +0.6 672,667 + +0.5 672,667 + -0.7 672,667 + +1.1 672,667 + +0.7 672,667 + +1.1 672,667 + +0.2 672,667 + -1.0 672,667 + +0.2 672,667 + +2.9 672,667 + +0.2 672,667 + -0.7 672,667 + -0.7 672,667 + -1.7 672,667 + -0.8 672,667 + -0.4 672,667 + -0.4 672,667 + -0.1 672,667 + +1.3 672,667 + -2.1 672,667 + +0.2 672,667 + +1.3 672,667 + -2.0 672,668 - -0.9 672,668 - -0.7 672,668 - -0.8 672,668 - +0.8 672,668 - -0.4 672,668 - +0.0 672,668 - +0.5 672,668 - +0.4 672,668 - +0.5 672,668 - -2.5 672,668 - +0.6 672,668 - +0.9 672,805 - +0.2 672,906 - +0.0 672,906 - -0.2 672,906 - -0.1 672,965 + +1.2 672,966 - -0.5 672,969 - -0.3 673,076 + -1.5 673,076 + +0.0 673,076 + +0.0 673,076 + -0.7 673,076 + +0.6 673,077 - +0.2 673,077 - -0.1 673,077 - +0.6 673,096 + -1.3 673,135 + -0.3 673,135 + -0.3 673,135 + -2.4 673,136 - -0.6 673,160 + +0.2 673,167 - -1.9 673,244 + +0.0 673,303 + -2.2 673,303 + -0.3 673,303 + -2.8 673,303 + -0.2 673,303 + +0.8 673,303 + +0.1 673,304 - +0.4 673,304 - -1.5 673,304 - -1.2 673,304 - -0.7 673,304 - -0.1 673,304 - -0.7 673,304 - +0.6 673,304 - +0.0 673,304 - -0.1 673,307 + +0.5 673,308 - -2.0 673,308 - -0.2 673,439 + +0.0 673,439 + -0.4 673,440 - +0.1 673,440 - -0.2 673,511 + Psyr_0588 0.12 -1.9 673,595 + Psyr_0588 0.14 -0.1 673,595 + Psyr_0588 0.14 +0.9 673,596 - Psyr_0588 0.14 -0.1 673,734 - Psyr_0588 0.19 -1.5 673,826 + Psyr_0588 0.21 +0.2 673,826 + Psyr_0588 0.21 +0.1 673,993 + Psyr_0588 0.27 -0.7 674,025 - Psyr_0588 0.27 -0.1 674,232 - Psyr_0588 0.34 -0.2 674,480 + Psyr_0588 0.41 +0.9 674,483 + Psyr_0588 0.41 +1.4 674,483 + Psyr_0588 0.41 -1.4 674,483 + Psyr_0588 0.41 -0.7 674,483 + Psyr_0588 0.41 +0.1 674,483 + Psyr_0588 0.41 +0.7 674,483 + Psyr_0588 0.41 -1.7 674,483 + Psyr_0588 0.41 -0.2 674,484 - Psyr_0588 0.41 +0.3 674,484 - Psyr_0588 0.41 -0.7 674,484 - Psyr_0588 0.41 +0.2 674,484 - Psyr_0588 0.41 +0.7 674,663 + Psyr_0588 0.47 -0.1 674,664 - Psyr_0588 0.47 -0.1 674,664 - Psyr_0588 0.47 -0.8 674,939 + Psyr_0588 0.55 +0.5 674,940 - Psyr_0588 0.55 -0.5 674,975 + Psyr_0588 0.56 -0.2 674,976 - Psyr_0588 0.56 -0.7 674,976 - Psyr_0588 0.56 +1.4 675,044 + Psyr_0588 0.59 +0.9 675,045 - Psyr_0588 0.59 -0.2 675,167 + Psyr_0588 0.62 +1.7 675,167 + Psyr_0588 0.62 +0.2 675,291 + Psyr_0588 0.66 +0.1 675,326 + Psyr_0588 0.67 -0.7 675,327 - Psyr_0588 0.67 -0.2 675,353 + Psyr_0588 0.68 +0.1 675,354 - Psyr_0588 0.68 -2.1 675,429 - Psyr_0588 0.70 +0.0 675,570 - Psyr_0588 0.75 +0.2 675,704 + Psyr_0588 0.79 +0.2 675,881 + Psyr_0588 0.84 +1.5 675,974 + Psyr_0588 0.87 +0.1 675,975 - Psyr_0588 0.87 -0.1 676,034 + Psyr_0588 0.89 -0.3 676,035 - Psyr_0588 0.89 -0.6 676,035 - Psyr_0588 0.89 +0.5 676,223 + -0.3 676,224 - +0.3 676,249 + +0.5 676,250 - +0.4 676,254 - -0.5 676,254 - +0.5 676,254 - -1.2 676,400 + -0.5 676,457 - +0.3 676,470 + -0.9 676,470 + -1.1 676,470 + +0.4 676,470 + +0.6 676,471 - -2.1 676,471 - +0.1 676,471 - +2.2 676,471 - +0.3 676,530 + -0.5 676,530 + +0.5 676,530 + +0.6 676,530 + +0.6 676,531 - -1.4 676,531 - -0.2 676,534 + +0.6 676,534 + +0.2 676,534 + -1.0 676,534 + +0.9 676,534 + +0.6 676,534 + +0.7 676,534 + -0.5 676,535 - -1.9 676,535 - +0.5 676,535 - -0.8 676,535 - -0.4 676,535 - -0.4 676,589 - +0.5 676,675 + -0.2 676,675 + +0.0 676,675 + -0.3 676,675 + -0.7 676,676 - -0.2 676,676 - +0.9 676,676 - +1.0 676,676 - -0.1 676,676 - -0.4 676,676 - +0.5 676,676 - -0.8 676,676 - +0.5 676,684 + -0.7 676,684 + +0.2 676,684 + +0.1 676,684 + +1.7 676,684 + +0.0 676,685 - -0.4 676,685 - -0.7 676,685 - -0.3 676,685 - +0.7 676,685 - -0.4 676,942 + Psyr_0589 0.18 +2.9 676,942 + Psyr_0589 0.18 -0.4 676,942 + Psyr_0589 0.18 -0.5 676,942 + Psyr_0589 0.18 +0.9 676,942 + Psyr_0589 0.18 +1.5 676,942 + Psyr_0589 0.18 -0.2 676,942 + Psyr_0589 0.18 +0.8 676,942 + Psyr_0589 0.18 +0.1 676,942 + Psyr_0589 0.18 +0.2 676,942 + Psyr_0589 0.18 +0.6 676,942 + Psyr_0589 0.18 +0.7 676,943 - Psyr_0589 0.18 +0.1 676,943 - Psyr_0589 0.18 -0.5 676,943 - Psyr_0589 0.18 +1.7 676,943 - Psyr_0589 0.18 +0.1 676,943 - Psyr_0589 0.18 +1.4 677,204 - Psyr_0589 0.29 -1.7 677,204 - -1.1 677,218 + Psyr_0589 0.29 +1.7 677,219 - Psyr_0589 0.29 -0.4 677,219 - Psyr_0589 0.29 +0.7 677,219 - Psyr_0589 0.29 +0.2 677,287 + Psyr_0589 0.32 -1.4 677,288 - Psyr_0589 0.32 -0.4
Or see this region's nucleotide sequence