Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0567

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0566 and Psyr_0567 are separated by 63 nucleotidesPsyr_0567 and Psyr_0568 are separated by 26 nucleotidesPsyr_0568 and Psyr_0569 are separated by 14 nucleotides Psyr_0566: Psyr_0566 - 4Fe-4S cluster binding protein, at 643,077 to 644,165 _0566 Psyr_0567: Psyr_0567 - Protein of unknown function UPF0031:YjeF-related protein, N-terminal, at 644,229 to 645,719 _0567 Psyr_0568: Psyr_0568 - Protein of unknown function UPF0079, at 645,746 to 646,177 _0568 Psyr_0569: Psyr_0569 - N-acetylmuramoyl-L-alanine amidase, at 646,192 to 647,607 _0569 Position (kb) 644 645 646Strain fitness (log2 ratio) -2 -1 0 1 2 3at 643.235 kb on - strand, within Psyr_0566at 643.484 kb on + strand, within Psyr_0566at 643.484 kb on + strand, within Psyr_0566at 643.484 kb on + strand, within Psyr_0566at 643.484 kb on + strand, within Psyr_0566at 643.484 kb on + strand, within Psyr_0566at 643.485 kb on - strand, within Psyr_0566at 643.485 kb on - strand, within Psyr_0566at 643.507 kb on + strand, within Psyr_0566at 643.508 kb on - strand, within Psyr_0566at 643.553 kb on + strand, within Psyr_0566at 643.554 kb on - strand, within Psyr_0566at 643.554 kb on - strand, within Psyr_0566at 643.772 kb on + strand, within Psyr_0566at 643.772 kb on + strand, within Psyr_0566at 643.773 kb on - strand, within Psyr_0566at 643.816 kb on + strand, within Psyr_0566at 643.817 kb on - strand, within Psyr_0566at 643.846 kb on + strand, within Psyr_0566at 643.846 kb on + strand, within Psyr_0566at 643.847 kb on - strand, within Psyr_0566at 643.847 kb on - strand, within Psyr_0566at 643.847 kb on - strand, within Psyr_0566at 643.847 kb on - strand, within Psyr_0566at 643.900 kb on + strand, within Psyr_0566at 643.900 kb on + strand, within Psyr_0566at 643.900 kb on + strand, within Psyr_0566at 643.901 kb on - strand, within Psyr_0566at 643.901 kb on - strand, within Psyr_0566at 643.901 kb on - strand, within Psyr_0566at 643.901 kb on - strand, within Psyr_0566at 643.982 kb on + strand, within Psyr_0566at 643.983 kb on - strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.984 kb on + strand, within Psyr_0566at 643.985 kb on - strand, within Psyr_0566at 643.985 kb on - strand, within Psyr_0566at 643.985 kb on - strand, within Psyr_0566at 643.985 kb on - strand, within Psyr_0566at 643.985 kb on - strand, within Psyr_0566at 643.985 kb on - strand, within Psyr_0566at 644.002 kb on + strand, within Psyr_0566at 644.002 kb on + strand, within Psyr_0566at 644.145 kb on + strandat 644.145 kb on + strandat 644.145 kb on + strandat 644.145 kb on + strandat 644.145 kb on + strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.153 kb on + strandat 644.153 kb on + strandat 644.154 kb on - strandat 644.154 kb on - strandat 644.195 kb on + strandat 644.195 kb on + strandat 644.195 kb on + strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.196 kb on - strandat 644.197 kb on + strandat 644.197 kb on + strandat 644.197 kb on + strandat 644.197 kb on + strandat 644.197 kb on + strandat 644.197 kb on + strandat 644.198 kb on - strandat 644.198 kb on - strandat 644.222 kb on + strandat 644.240 kb on + strandat 644.241 kb on - strandat 644.252 kb on - strandat 644.265 kb on + strandat 644.265 kb on + strandat 644.368 kb on + strandat 644.368 kb on + strandat 644.559 kb on - strand, within Psyr_0567at 644.646 kb on + strand, within Psyr_0567at 644.646 kb on + strand, within Psyr_0567at 644.646 kb on + strand, within Psyr_0567at 644.647 kb on - strand, within Psyr_0567at 644.647 kb on - strand, within Psyr_0567at 644.647 kb on - strand, within Psyr_0567at 644.647 kb on - strand, within Psyr_0567at 644.771 kb on + strand, within Psyr_0567at 645.275 kb on + strand, within Psyr_0567at 645.275 kb on + strand, within Psyr_0567at 645.275 kb on + strand, within Psyr_0567at 645.413 kb on + strand, within Psyr_0567at 645.668 kb on + strandat 645.668 kb on + strandat 645.668 kb on + strandat 645.668 kb on + strandat 645.688 kb on + strandat 646.175 kb on + strandat 646.175 kb on + strandat 646.175 kb on + strandat 646.175 kb on + strandat 646.175 kb on + strandat 646.175 kb on + strandat 646.187 kb on + strandat 646.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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643,235 - Psyr_0566 0.15 +1.0
643,484 + Psyr_0566 0.37 +1.1
643,484 + Psyr_0566 0.37 +0.9
643,484 + Psyr_0566 0.37 -0.4
643,484 + Psyr_0566 0.37 -0.6
643,484 + Psyr_0566 0.37 +1.5
643,485 - Psyr_0566 0.37 -0.4
643,485 - Psyr_0566 0.37 +1.9
643,507 + Psyr_0566 0.39 +0.1
643,508 - Psyr_0566 0.40 -1.4
643,553 + Psyr_0566 0.44 -1.9
643,554 - Psyr_0566 0.44 -0.3
643,554 - Psyr_0566 0.44 +0.9
643,772 + Psyr_0566 0.64 -0.7
643,772 + Psyr_0566 0.64 -0.7
643,773 - Psyr_0566 0.64 -0.4
643,816 + Psyr_0566 0.68 +0.5
643,817 - Psyr_0566 0.68 -0.3
643,846 + Psyr_0566 0.71 +1.2
643,846 + Psyr_0566 0.71 +0.5
643,847 - Psyr_0566 0.71 -0.9
643,847 - Psyr_0566 0.71 -2.1
643,847 - Psyr_0566 0.71 +0.1
643,847 - Psyr_0566 0.71 -0.5
643,900 + Psyr_0566 0.76 -0.7
643,900 + Psyr_0566 0.76 +1.1
643,900 + Psyr_0566 0.76 +0.9
643,901 - Psyr_0566 0.76 -0.1
643,901 - Psyr_0566 0.76 +0.1
643,901 - Psyr_0566 0.76 +0.8
643,901 - Psyr_0566 0.76 -0.8
643,982 + Psyr_0566 0.83 +0.2
643,983 - Psyr_0566 0.83 -0.3
643,984 + Psyr_0566 0.83 +0.5
643,984 + Psyr_0566 0.83 +0.1
643,984 + Psyr_0566 0.83 -0.5
643,984 + Psyr_0566 0.83 +0.9
643,984 + Psyr_0566 0.83 -0.7
643,984 + Psyr_0566 0.83 +1.3
643,984 + Psyr_0566 0.83 +0.6
643,984 + Psyr_0566 0.83 +0.7
643,984 + Psyr_0566 0.83 -0.5
643,984 + Psyr_0566 0.83 -0.1
643,984 + Psyr_0566 0.83 -1.5
643,984 + Psyr_0566 0.83 -0.7
643,984 + Psyr_0566 0.83 -0.8
643,985 - Psyr_0566 0.83 +0.3
643,985 - Psyr_0566 0.83 +0.6
643,985 - Psyr_0566 0.83 +1.8
643,985 - Psyr_0566 0.83 -0.7
643,985 - Psyr_0566 0.83 -0.1
643,985 - Psyr_0566 0.83 -0.1
644,002 + Psyr_0566 0.85 -0.2
644,002 + Psyr_0566 0.85 -1.7
644,145 + -1.7
644,145 + -0.6
644,145 + -1.2
644,145 + +0.0
644,145 + +0.3
644,146 - +1.5
644,146 - +0.5
644,146 - +0.9
644,146 - +0.2
644,146 - +0.3
644,146 - -0.8
644,153 + -0.8
644,153 + -0.4
644,154 - -0.0
644,154 - +2.5
644,195 + -2.4
644,195 + -0.7
644,195 + -0.7
644,196 - -0.1
644,196 - +0.5
644,196 - -0.0
644,197 + -0.7
644,197 + -0.2
644,197 + +1.4
644,197 + -0.6
644,197 + +0.9
644,197 + -0.3
644,198 - +0.8
644,198 - -0.9
644,222 + -0.1
644,240 + -0.1
644,241 - -0.9
644,252 - -1.4
644,265 + -0.2
644,265 + -0.9
644,368 + +0.3
644,368 + -0.7
644,559 - Psyr_0567 0.22 -0.7
644,646 + Psyr_0567 0.28 -0.7
644,646 + Psyr_0567 0.28 -0.2
644,646 + Psyr_0567 0.28 +0.1
644,647 - Psyr_0567 0.28 -0.7
644,647 - Psyr_0567 0.28 -0.5
644,647 - Psyr_0567 0.28 -0.7
644,647 - Psyr_0567 0.28 -0.9
644,771 + Psyr_0567 0.36 -0.8
645,275 + Psyr_0567 0.70 -0.7
645,275 + Psyr_0567 0.70 -0.9
645,275 + Psyr_0567 0.70 -0.2
645,413 + Psyr_0567 0.79 +0.0
645,668 + +0.4
645,668 + +1.4
645,668 + -0.1
645,668 + +0.2
645,688 + -0.1
646,175 + -0.4
646,175 + -0.2
646,175 + +2.9
646,175 + -0.4
646,175 + +0.7
646,175 + +1.2
646,187 + +1.2
646,191 + -2.1

Or see this region's nucleotide sequence