Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0488 and Psyr_0489 are separated by 46 nucleotides Psyr_0489 and Psyr_0490 are separated by 14 nucleotides Psyr_0490 and Psyr_0491 are separated by 50 nucleotides
Psyr_0488: Psyr_0488 - Response regulator receiver, at 525,474 to 525,884
_0488
Psyr_0489: Psyr_0489 - Response regulator receiver, at 525,931 to 526,296
_0489
Psyr_0490: Psyr_0490 - CheW-like protein, at 526,311 to 526,850
_0490
Psyr_0491: Psyr_0491 - chemotaxis sensory transducer, at 526,901 to 528,943
_0491
Position (kb) 526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 525.360 kb on + strand at 525.360 kb on + strand at 525.360 kb on + strand at 525.637 kb on + strand, within Psyr_0488 at 525.637 kb on + strand, within Psyr_0488 at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.877 kb on + strand at 525.878 kb on - strand at 525.878 kb on - strand at 525.878 kb on - strand at 525.878 kb on - strand at 525.878 kb on - strand at 525.878 kb on - strand at 525.878 kb on - strand at 525.878 kb on - strand at 525.878 kb on - strand at 525.879 kb on - strand at 525.900 kb on + strand at 525.900 kb on + strand at 525.900 kb on + strand at 525.900 kb on + strand at 525.912 kb on - strand at 525.912 kb on - strand at 525.973 kb on + strand, within Psyr_0489 at 526.156 kb on - strand, within Psyr_0489 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.745 kb on + strand, within Psyr_0490 at 526.745 kb on + strand, within Psyr_0490 at 526.746 kb on - strand, within Psyr_0490 at 526.746 kb on - strand, within Psyr_0490 at 526.773 kb on - strand, within Psyr_0490 at 526.848 kb on + strand at 526.848 kb on + strand at 526.849 kb on - strand at 526.849 kb on - strand at 526.849 kb on - strand at 526.907 kb on - strand at 526.909 kb on + strand at 526.909 kb on + strand at 526.909 kb on + strand at 526.909 kb on + strand at 526.951 kb on + strand at 526.952 kb on - strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.043 kb on - strand at 527.230 kb on - strand, within Psyr_0491 at 527.599 kb on - strand, within Psyr_0491 at 527.709 kb on - strand, within Psyr_0491
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 525,360 + -0.5 525,360 + -0.0 525,360 + -2.2 525,637 + Psyr_0488 0.40 +1.3 525,637 + Psyr_0488 0.40 +3.0 525,877 + -0.7 525,877 + +0.2 525,877 + +0.2 525,877 + +0.1 525,877 + -0.4 525,877 + -1.4 525,877 + -0.0 525,877 + -0.7 525,877 + -1.8 525,877 + -0.1 525,877 + -0.2 525,877 + +0.3 525,878 - +1.3 525,878 - -0.9 525,878 - -1.5 525,878 - +0.8 525,878 - -0.4 525,878 - -0.6 525,878 - -0.7 525,878 - -0.4 525,878 - -0.4 525,879 - -1.9 525,900 + +0.2 525,900 + +1.0 525,900 + -1.1 525,900 + -0.3 525,912 - -0.5 525,912 - -1.0 525,973 + Psyr_0489 0.11 -1.2 526,156 - Psyr_0489 0.61 -1.6 526,651 + Psyr_0490 0.63 -0.4 526,651 + Psyr_0490 0.63 +1.0 526,651 + Psyr_0490 0.63 +0.8 526,651 + Psyr_0490 0.63 -0.4 526,651 + Psyr_0490 0.63 +0.3 526,651 + Psyr_0490 0.63 -1.4 526,651 + Psyr_0490 0.63 -0.8 526,651 + Psyr_0490 0.63 -1.3 526,652 - Psyr_0490 0.63 -0.2 526,652 - Psyr_0490 0.63 -2.8 526,652 - Psyr_0490 0.63 -0.0 526,652 - Psyr_0490 0.63 -0.7 526,652 - Psyr_0490 0.63 -2.2 526,745 + Psyr_0490 0.80 +1.0 526,745 + Psyr_0490 0.80 -0.0 526,746 - Psyr_0490 0.81 -0.0 526,746 - Psyr_0490 0.81 -3.4 526,773 - Psyr_0490 0.86 -0.6 526,848 + -1.0 526,848 + -0.2 526,849 - +0.3 526,849 - -1.5 526,849 - -0.9 526,907 - -1.5 526,909 + -0.3 526,909 + -1.4 526,909 + -0.4 526,909 + -0.1 526,951 + -0.4 526,952 - -1.0 527,042 + -0.4 527,042 + -1.0 527,042 + -2.6 527,042 + -0.7 527,042 + -0.9 527,042 + -0.2 527,043 - -1.2 527,230 - Psyr_0491 0.16 +0.2 527,599 - Psyr_0491 0.34 -1.2 527,709 - Psyr_0491 0.40 -0.8
Or see this region's nucleotide sequence