Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0353

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0352 and Psyr_0353 overlap by 1 nucleotidesPsyr_0353 and Psyr_0354 are separated by 25 nucleotides Psyr_0352: Psyr_0352 - monooxygenase, DszA family, at 376,391 to 377,749 _0352 Psyr_0353: Psyr_0353 - Acyl-CoA dehydrogenase, C-terminal, at 377,749 to 378,954 _0353 Psyr_0354: Psyr_0354 - Acyl-CoA dehydrogenase, C-terminal, at 378,980 to 380,302 _0354 Position (kb) 377 378 379Strain fitness (log2 ratio) -2 -1 0 1 2at 376.756 kb on - strand, within Psyr_0352at 377.130 kb on + strand, within Psyr_0352at 377.178 kb on + strand, within Psyr_0352at 377.179 kb on - strand, within Psyr_0352at 377.179 kb on - strand, within Psyr_0352at 377.241 kb on + strand, within Psyr_0352at 377.241 kb on + strand, within Psyr_0352at 377.241 kb on + strand, within Psyr_0352at 377.241 kb on + strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.409 kb on + strand, within Psyr_0352at 377.410 kb on - strand, within Psyr_0352at 377.421 kb on + strand, within Psyr_0352at 377.422 kb on - strand, within Psyr_0352at 377.422 kb on - strand, within Psyr_0352at 377.507 kb on + strand, within Psyr_0352at 377.550 kb on + strand, within Psyr_0352at 377.559 kb on + strand, within Psyr_0352at 377.559 kb on + strand, within Psyr_0352at 377.559 kb on + strand, within Psyr_0352at 377.559 kb on + strand, within Psyr_0352at 377.560 kb on - strand, within Psyr_0352at 377.560 kb on - strand, within Psyr_0352at 377.560 kb on - strand, within Psyr_0352at 377.635 kb on - strandat 377.775 kb on + strandat 377.789 kb on + strandat 377.789 kb on + strandat 377.789 kb on + strandat 377.790 kb on - strandat 377.790 kb on - strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 378.253 kb on - strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.447 kb on + strand, within Psyr_0353at 378.447 kb on + strand, within Psyr_0353at 378.448 kb on - strand, within Psyr_0353at 378.458 kb on + strand, within Psyr_0353at 378.459 kb on - strand, within Psyr_0353at 378.459 kb on - strand, within Psyr_0353at 378.583 kb on + strand, within Psyr_0353at 378.606 kb on - strand, within Psyr_0353at 378.886 kb on + strandat 378.886 kb on + strandat 378.886 kb on + strandat 378.886 kb on + strandat 378.886 kb on + strandat 378.887 kb on - strandat 379.041 kb on + strandat 379.184 kb on + strand, within Psyr_0354at 379.184 kb on + strand, within Psyr_0354at 379.184 kb on + strand, within Psyr_0354at 379.185 kb on - strand, within Psyr_0354at 379.185 kb on - strand, within Psyr_0354at 379.338 kb on + strand, within Psyr_0354at 379.338 kb on + strand, within Psyr_0354at 379.338 kb on + strand, within Psyr_0354at 379.339 kb on - strand, within Psyr_0354at 379.339 kb on - strand, within Psyr_0354at 379.339 kb on - strand, within Psyr_0354at 379.397 kb on + strand, within Psyr_0354at 379.397 kb on + strand, within Psyr_0354at 379.397 kb on + strand, within Psyr_0354at 379.397 kb on + strand, within Psyr_0354at 379.398 kb on - strand, within Psyr_0354at 379.510 kb on + strand, within Psyr_0354at 379.710 kb on + strand, within Psyr_0354at 379.711 kb on - strand, within Psyr_0354at 379.711 kb on - strand, within Psyr_0354at 379.711 kb on - strand, within Psyr_0354

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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376,756 - Psyr_0352 0.27 -0.7
377,130 + Psyr_0352 0.54 -1.0
377,178 + Psyr_0352 0.58 +1.5
377,179 - Psyr_0352 0.58 -1.1
377,179 - Psyr_0352 0.58 +0.5
377,241 + Psyr_0352 0.63 -0.9
377,241 + Psyr_0352 0.63 -0.1
377,241 + Psyr_0352 0.63 -0.8
377,241 + Psyr_0352 0.63 +0.4
377,242 - Psyr_0352 0.63 -0.1
377,242 - Psyr_0352 0.63 +0.0
377,242 - Psyr_0352 0.63 -0.3
377,242 - Psyr_0352 0.63 -0.3
377,242 - Psyr_0352 0.63 +1.0
377,242 - Psyr_0352 0.63 +1.0
377,409 + Psyr_0352 0.75 +1.0
377,410 - Psyr_0352 0.75 -0.4
377,421 + Psyr_0352 0.76 -0.9
377,422 - Psyr_0352 0.76 +0.0
377,422 - Psyr_0352 0.76 -0.6
377,507 + Psyr_0352 0.82 +0.3
377,550 + Psyr_0352 0.85 -0.6
377,559 + Psyr_0352 0.86 -1.3
377,559 + Psyr_0352 0.86 -0.5
377,559 + Psyr_0352 0.86 +0.2
377,559 + Psyr_0352 0.86 -0.2
377,560 - Psyr_0352 0.86 -0.8
377,560 - Psyr_0352 0.86 +0.7
377,560 - Psyr_0352 0.86 +0.4
377,635 - -0.1
377,775 + -2.0
377,789 + +0.5
377,789 + +0.7
377,789 + -1.0
377,790 - -1.1
377,790 - -1.1
377,792 + +0.3
377,792 + -1.2
377,792 + -0.3
377,792 + +0.3
377,792 + +2.0
377,792 + -0.0
377,792 + -0.3
377,792 + +0.3
377,793 - -0.4
377,793 - -0.6
377,793 - +0.8
377,793 - +1.1
377,793 - -0.6
377,793 - -0.1
377,839 - +0.4
377,839 - -1.3
377,839 - -0.4
377,839 - -0.3
377,839 - -1.5
377,839 - -0.9
378,253 - Psyr_0353 0.42 -0.1
378,302 + Psyr_0353 0.46 -0.2
378,302 + Psyr_0353 0.46 -1.4
378,302 + Psyr_0353 0.46 +0.8
378,302 + Psyr_0353 0.46 -0.2
378,302 + Psyr_0353 0.46 -0.9
378,302 + Psyr_0353 0.46 +1.2
378,302 + Psyr_0353 0.46 +0.2
378,302 + Psyr_0353 0.46 -0.3
378,302 + Psyr_0353 0.46 -0.6
378,302 + Psyr_0353 0.46 -0.8
378,302 + Psyr_0353 0.46 +0.2
378,302 + Psyr_0353 0.46 +0.6
378,302 + Psyr_0353 0.46 -0.4
378,302 + Psyr_0353 0.46 +1.6
378,302 + Psyr_0353 0.46 -2.4
378,302 + Psyr_0353 0.46 +1.5
378,302 + Psyr_0353 0.46 -0.6
378,303 - Psyr_0353 0.46 -1.9
378,303 - Psyr_0353 0.46 +0.0
378,303 - Psyr_0353 0.46 -0.7
378,303 - Psyr_0353 0.46 +1.0
378,303 - Psyr_0353 0.46 +0.0
378,303 - Psyr_0353 0.46 -1.1
378,303 - Psyr_0353 0.46 -0.9
378,303 - Psyr_0353 0.46 -0.2
378,303 - Psyr_0353 0.46 +0.3
378,303 - Psyr_0353 0.46 -0.3
378,303 - Psyr_0353 0.46 -0.1
378,303 - Psyr_0353 0.46 -1.3
378,303 - Psyr_0353 0.46 +0.0
378,303 - Psyr_0353 0.46 -0.6
378,447 + Psyr_0353 0.58 -0.1
378,447 + Psyr_0353 0.58 +0.8
378,448 - Psyr_0353 0.58 +0.6
378,458 + Psyr_0353 0.59 +0.5
378,459 - Psyr_0353 0.59 -1.3
378,459 - Psyr_0353 0.59 -1.3
378,583 + Psyr_0353 0.69 -1.4
378,606 - Psyr_0353 0.71 +0.1
378,886 + -0.4
378,886 + +0.5
378,886 + -0.6
378,886 + -0.5
378,886 + +0.2
378,887 - +1.0
379,041 + -1.1
379,184 + Psyr_0354 0.15 -0.7
379,184 + Psyr_0354 0.15 -0.2
379,184 + Psyr_0354 0.15 +0.4
379,185 - Psyr_0354 0.15 +0.4
379,185 - Psyr_0354 0.15 -0.6
379,338 + Psyr_0354 0.27 +1.0
379,338 + Psyr_0354 0.27 -0.7
379,338 + Psyr_0354 0.27 +0.9
379,339 - Psyr_0354 0.27 +1.4
379,339 - Psyr_0354 0.27 +0.0
379,339 - Psyr_0354 0.27 +1.0
379,397 + Psyr_0354 0.32 -1.6
379,397 + Psyr_0354 0.32 +1.0
379,397 + Psyr_0354 0.32 +0.1
379,397 + Psyr_0354 0.32 -0.3
379,398 - Psyr_0354 0.32 +0.0
379,510 + Psyr_0354 0.40 -2.0
379,710 + Psyr_0354 0.55 -0.7
379,711 - Psyr_0354 0.55 +1.0
379,711 - Psyr_0354 0.55 +1.0
379,711 - Psyr_0354 0.55 -0.9

Or see this region's nucleotide sequence