Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0132

Experiment: KB with Nitrofurantoin 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 125 ug/ml
139,460	+				+0.9
139,580	+				-0.2
139,586	+				+0.1
139,586	+				+1.2
139,587	-				-0.5
139,710	-		Psyr_0131	0.18	-0.9
139,710	-		Psyr_0131	0.18	-0.1
139,827	+				+0.5
139,828	-		Psyr_0131	0.36	-0.1
140,014	-		Psyr_0131	0.63	+0.7
140,014	-		Psyr_0131	0.63	-0.5
140,059	+		Psyr_0131	0.70	-0.9
140,059	+		Psyr_0131	0.70	+0.4
140,059	+		Psyr_0131	0.70	+0.7
140,059	+		Psyr_0131	0.70	+0.5
140,059	+		Psyr_0131	0.70	+0.8
140,059	+		Psyr_0131	0.70	-0.2
140,060	-		Psyr_0131	0.70	-0.1
140,205	+				-1.0
140,205	+				-0.6
140,205	+				-0.1
140,205	+				-0.3
140,206	-				-0.8
140,206	-				+0.5
140,206	-				-1.2
140,206	-				-0.4
140,206	-				-1.9
140,206	-				-2.1
140,206	-				-0.3
140,206	-				-1.4
140,206	-				-0.4
140,206	-				+0.7
140,265	+				+0.6
140,305	+				+0.1
140,305	+				-0.4
140,306	-				+0.7
140,306	-				+0.4
140,306	-				-1.1
140,306	-				+1.3
140,306	-				-0.1
140,306	-				+0.0
140,355	+				+0.6
140,355	+				+1.1
140,355	+				-0.1
140,355	+				+0.6
140,355	+				-0.9
140,356	-				-0.4
140,356	-				+0.9
140,356	-				-0.1
140,435	+		Psyr_0132	0.29	-0.9
140,435	+		Psyr_0132	0.29	-0.1
140,436	-		Psyr_0132	0.30	-0.3
140,436	-		Psyr_0132	0.30	+1.7
140,436	-		Psyr_0132	0.30	-0.5
140,436	-		Psyr_0132	0.30	-2.1
140,436	-		Psyr_0132	0.30	-1.6
140,540	+		Psyr_0132	0.71	-1.4
140,593	+				+0.5
140,593	+				+0.3
140,593	+				-0.2
140,593	+				-0.1
140,593	+				-0.4
140,593	+				-0.4
140,593	+				+0.1
140,593	+				-0.0
140,593	+				+0.1
140,593	+				-0.9
140,593	+				-0.2
140,594	-				-0.8
140,594	-				-0.1
140,594	-				+1.1
140,594	-				+0.3
140,594	-				-0.9
140,713	+				+0.1
140,713	+				+0.1
140,714	-				-0.6
140,714	-				+0.1
140,806	+		Psyr_0133	0.24	-0.1
140,807	-		Psyr_0133	0.24	+1.4
140,807	-		Psyr_0133	0.24	-0.3
140,854	+		Psyr_0133	0.34	+0.0
140,854	+		Psyr_0133	0.34	-0.3
140,854	+		Psyr_0133	0.34	+0.5
140,854	+		Psyr_0133	0.34	-0.1
140,855	-		Psyr_0133	0.34	-0.1
140,855	-		Psyr_0133	0.34	-0.5
140,855	-		Psyr_0133	0.34	+0.3
140,855	-		Psyr_0133	0.34	-2.2
140,855	-		Psyr_0133	0.34	+0.9
140,855	-		Psyr_0133	0.34	+1.1
140,855	-		Psyr_0133	0.34	-0.2
140,907	+		Psyr_0133	0.45	+0.1
140,908	-		Psyr_0133	0.45	-0.2
141,071	+		Psyr_0133	0.80	-0.3
141,190	+				+0.9
141,190	+				+1.2
141,191	-				+0.1
141,191	-				+1.7
141,191	-				-0.5
141,191	-				+0.8
141,191	-				+1.7
141,191	-				+0.2
141,191	-				-0.5
141,191	-				+0.6
141,233	-				+0.4
141,233	-				-0.2
141,233	-				+1.9
141,233	-				+0.4
141,233	-				+0.1
141,561	-				-0.4
141,561	-				-0.3