Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0043 and Psyr_0044 are separated by 171 nucleotides Psyr_0044 and Psyr_0045 are separated by 112 nucleotides Psyr_0045 and Psyr_0046 overlap by 4 nucleotides Psyr_0046 and Psyr_0047 are separated by 44 nucleotides Psyr_0047 and Psyr_0048 are separated by 93 nucleotides
Psyr_0043: Psyr_0043 - conserved hypothetical protein, at 44,004 to 45,059
_0043
Psyr_0044: Psyr_0044 - transferase hexapeptide repeat protein, at 45,231 to 45,776
_0044
Psyr_0045: Psyr_0045 - oligopeptidase A, Metallo peptidase, MEROPS family M03A, at 45,889 to 47,940
_0045
Psyr_0046: Psyr_0046 - conserved hypothetical protein, at 47,937 to 48,227
_0046
Psyr_0047: Psyr_0047 - hypothetical protein, at 48,272 to 48,574
_0047
Psyr_0048: Psyr_0048 - conserved hypothetical protein, at 48,668 to 48,898
_0048
Position (kb) 45
46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2 at 44.897 kb on + strand, within Psyr_0043 at 44.898 kb on - strand, within Psyr_0043 at 44.919 kb on + strand, within Psyr_0043 at 44.919 kb on + strand, within Psyr_0043 at 44.920 kb on - strand, within Psyr_0043 at 44.985 kb on + strand at 45.216 kb on + strand at 45.217 kb on - strand at 45.217 kb on - strand at 45.219 kb on + strand at 45.219 kb on + strand at 45.219 kb on + strand at 45.219 kb on + strand at 45.219 kb on + strand at 45.220 kb on - strand at 45.220 kb on - strand at 45.220 kb on - strand at 45.220 kb on - strand at 45.220 kb on - strand at 45.239 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.280 kb on + strand at 45.281 kb on - strand at 45.281 kb on - strand at 45.281 kb on - strand at 45.281 kb on - strand at 45.281 kb on - strand at 45.281 kb on - strand at 45.285 kb on - strand at 45.295 kb on + strand, within Psyr_0044 at 45.358 kb on + strand, within Psyr_0044 at 45.358 kb on + strand, within Psyr_0044 at 45.779 kb on + strand at 45.780 kb on - strand at 45.801 kb on + strand at 45.801 kb on + strand at 45.801 kb on + strand at 45.809 kb on + strand at 45.809 kb on + strand at 45.809 kb on + strand at 45.845 kb on + strand at 45.845 kb on + strand at 45.846 kb on - strand at 45.849 kb on + strand at 45.850 kb on - strand at 45.850 kb on - strand at 45.850 kb on - strand at 45.850 kb on - strand at 45.850 kb on - strand at 45.850 kb on - strand at 45.850 kb on - strand at 46.153 kb on + strand, within Psyr_0045 at 46.153 kb on + strand, within Psyr_0045 at 46.154 kb on - strand, within Psyr_0045 at 46.154 kb on - strand, within Psyr_0045 at 46.225 kb on + strand, within Psyr_0045 at 46.226 kb on - strand, within Psyr_0045 at 46.226 kb on - strand, within Psyr_0045 at 46.525 kb on + strand, within Psyr_0045 at 46.526 kb on - strand, within Psyr_0045 at 46.552 kb on + strand, within Psyr_0045 at 46.552 kb on + strand, within Psyr_0045 at 46.552 kb on + strand, within Psyr_0045 at 46.552 kb on + strand, within Psyr_0045 at 46.552 kb on + strand, within Psyr_0045 at 46.552 kb on + strand, within Psyr_0045 at 46.552 kb on + strand, within Psyr_0045 at 46.553 kb on - strand, within Psyr_0045 at 46.553 kb on - strand, within Psyr_0045 at 46.553 kb on - strand, within Psyr_0045 at 46.556 kb on - strand, within Psyr_0045 at 46.556 kb on - strand, within Psyr_0045 at 46.570 kb on + strand, within Psyr_0045 at 46.571 kb on - strand, within Psyr_0045 at 46.571 kb on - strand, within Psyr_0045 at 46.603 kb on + strand, within Psyr_0045 at 46.603 kb on + strand, within Psyr_0045 at 46.729 kb on + strand, within Psyr_0045 at 46.729 kb on + strand, within Psyr_0045 at 46.729 kb on + strand, within Psyr_0045 at 46.729 kb on + strand, within Psyr_0045 at 46.729 kb on + strand, within Psyr_0045 at 46.729 kb on + strand, within Psyr_0045 at 46.852 kb on + strand, within Psyr_0045 at 46.852 kb on + strand, within Psyr_0045 at 46.853 kb on - strand, within Psyr_0045 at 46.853 kb on - strand, within Psyr_0045 at 46.903 kb on + strand, within Psyr_0045 at 46.931 kb on - strand, within Psyr_0045 at 46.960 kb on + strand, within Psyr_0045 at 46.960 kb on + strand, within Psyr_0045 at 46.960 kb on + strand, within Psyr_0045 at 46.961 kb on - strand, within Psyr_0045 at 46.961 kb on - strand, within Psyr_0045 at 46.961 kb on - strand, within Psyr_0045 at 46.961 kb on - strand, within Psyr_0045 at 47.125 kb on + strand, within Psyr_0045 at 47.125 kb on + strand, within Psyr_0045 at 47.622 kb on + strand, within Psyr_0045 at 47.623 kb on - strand, within Psyr_0045 at 47.660 kb on - strand, within Psyr_0045 at 47.660 kb on - strand, within Psyr_0045 at 47.660 kb on - strand, within Psyr_0045 at 47.660 kb on - strand, within Psyr_0045 at 47.719 kb on + strand, within Psyr_0045 at 47.719 kb on + strand, within Psyr_0045 at 47.719 kb on + strand, within Psyr_0045 at 47.720 kb on - strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.726 kb on - strand, within Psyr_0045 at 47.726 kb on - strand, within Psyr_0045 at 47.726 kb on - strand, within Psyr_0045 at 47.945 kb on + strand at 47.953 kb on + strand at 47.953 kb on + strand at 48.099 kb on - strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.226 kb on - strand at 48.235 kb on + strand at 48.235 kb on + strand at 48.235 kb on + strand at 48.235 kb on + strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.240 kb on - strand at 48.270 kb on + strand at 48.270 kb on + strand at 48.270 kb on + strand at 48.270 kb on + strand at 48.271 kb on - strand at 48.271 kb on - strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.274 kb on - strand at 48.274 kb on - strand at 48.274 kb on - strand at 48.277 kb on + strand at 48.277 kb on + strand at 48.348 kb on + strand, within Psyr_0047 at 48.348 kb on + strand, within Psyr_0047 at 48.349 kb on - strand, within Psyr_0047 at 48.368 kb on + strand, within Psyr_0047 at 48.368 kb on + strand, within Psyr_0047 at 48.368 kb on + strand, within Psyr_0047 at 48.369 kb on - strand, within Psyr_0047 at 48.369 kb on - strand, within Psyr_0047 at 48.447 kb on + strand, within Psyr_0047 at 48.447 kb on + strand, within Psyr_0047 at 48.447 kb on + strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.451 kb on + strand, within Psyr_0047 at 48.464 kb on + strand, within Psyr_0047 at 48.465 kb on - strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.512 kb on + strand, within Psyr_0047 at 48.523 kb on + strand, within Psyr_0047 at 48.568 kb on + strand at 48.568 kb on + strand at 48.569 kb on - strand at 48.592 kb on - strand at 48.635 kb on + strand at 48.635 kb on + strand at 48.635 kb on + strand at 48.636 kb on - strand at 48.636 kb on - strand at 48.636 kb on - strand at 48.636 kb on - strand at 48.669 kb on + strand at 48.834 kb on - strand, within Psyr_0048 at 48.885 kb on + strand at 48.885 kb on + strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 44,897 + Psyr_0043 0.85 -0.2 44,898 - Psyr_0043 0.85 +0.2 44,919 + Psyr_0043 0.87 -0.0 44,919 + Psyr_0043 0.87 -0.7 44,920 - Psyr_0043 0.87 +0.1 44,985 + -0.0 45,216 + +0.7 45,217 - -0.4 45,217 - +1.1 45,219 + -0.5 45,219 + -1.9 45,219 + +0.2 45,219 + -0.6 45,219 + +0.7 45,220 - +0.0 45,220 - -0.7 45,220 - -0.1 45,220 - -1.1 45,220 - -0.3 45,239 + +0.6 45,280 + +1.0 45,280 + -0.0 45,280 + +1.0 45,280 + -0.4 45,280 + -0.8 45,280 + +0.8 45,280 + +1.6 45,280 + +0.3 45,280 + +0.1 45,280 + +0.9 45,280 + +0.5 45,280 + -0.2 45,280 + +0.4 45,281 - +0.3 45,281 - -1.5 45,281 - +1.4 45,281 - -0.3 45,281 - -0.6 45,281 - +0.7 45,285 - +0.7 45,295 + Psyr_0044 0.12 -0.6 45,358 + Psyr_0044 0.23 -0.5 45,358 + Psyr_0044 0.23 -1.5 45,779 + +0.5 45,780 - -0.0 45,801 + +0.4 45,801 + -0.3 45,801 + +0.4 45,809 + +0.4 45,809 + +0.1 45,809 + +1.1 45,845 + -1.5 45,845 + -0.0 45,846 - -0.4 45,849 + -0.5 45,850 - -0.5 45,850 - +0.2 45,850 - -0.3 45,850 - +1.3 45,850 - -0.4 45,850 - +2.0 45,850 - -0.5 46,153 + Psyr_0045 0.13 -1.7 46,153 + Psyr_0045 0.13 -1.5 46,154 - Psyr_0045 0.13 -0.9 46,154 - Psyr_0045 0.13 -0.5 46,225 + Psyr_0045 0.16 -0.2 46,226 - Psyr_0045 0.16 +0.5 46,226 - Psyr_0045 0.16 -1.9 46,525 + Psyr_0045 0.31 -1.9 46,526 - Psyr_0045 0.31 -0.3 46,552 + Psyr_0045 0.32 -0.5 46,552 + Psyr_0045 0.32 -1.4 46,552 + Psyr_0045 0.32 -1.0 46,552 + Psyr_0045 0.32 -0.1 46,552 + Psyr_0045 0.32 +1.2 46,552 + Psyr_0045 0.32 -0.6 46,552 + Psyr_0045 0.32 -1.2 46,553 - Psyr_0045 0.32 -1.8 46,553 - Psyr_0045 0.32 +1.1 46,553 - Psyr_0045 0.32 -0.8 46,556 - Psyr_0045 0.33 -1.4 46,556 - Psyr_0045 0.33 -0.5 46,570 + Psyr_0045 0.33 +1.1 46,571 - Psyr_0045 0.33 +0.1 46,571 - Psyr_0045 0.33 -2.0 46,603 + Psyr_0045 0.35 -0.1 46,603 + Psyr_0045 0.35 -0.3 46,729 + Psyr_0045 0.41 +0.3 46,729 + Psyr_0045 0.41 +0.7 46,729 + Psyr_0045 0.41 -0.6 46,729 + Psyr_0045 0.41 +1.7 46,729 + Psyr_0045 0.41 -0.5 46,729 + Psyr_0045 0.41 -2.7 46,852 + Psyr_0045 0.47 +0.4 46,852 + Psyr_0045 0.47 -0.7 46,853 - Psyr_0045 0.47 -0.1 46,853 - Psyr_0045 0.47 -0.5 46,903 + Psyr_0045 0.49 +0.1 46,931 - Psyr_0045 0.51 -0.8 46,960 + Psyr_0045 0.52 +0.4 46,960 + Psyr_0045 0.52 +1.7 46,960 + Psyr_0045 0.52 +0.0 46,961 - Psyr_0045 0.52 +0.0 46,961 - Psyr_0045 0.52 -0.1 46,961 - Psyr_0045 0.52 -0.7 46,961 - Psyr_0045 0.52 -0.2 47,125 + Psyr_0045 0.60 +0.7 47,125 + Psyr_0045 0.60 -0.2 47,622 + Psyr_0045 0.84 -1.1 47,623 - Psyr_0045 0.85 -1.1 47,660 - Psyr_0045 0.86 -1.4 47,660 - Psyr_0045 0.86 -0.3 47,660 - Psyr_0045 0.86 -0.5 47,660 - Psyr_0045 0.86 +0.4 47,719 + Psyr_0045 0.89 -0.7 47,719 + Psyr_0045 0.89 -0.0 47,719 + Psyr_0045 0.89 +1.2 47,720 - Psyr_0045 0.89 +2.1 47,725 + Psyr_0045 0.89 -0.3 47,725 + Psyr_0045 0.89 -0.2 47,725 + Psyr_0045 0.89 -2.4 47,725 + Psyr_0045 0.89 -0.3 47,725 + Psyr_0045 0.89 +0.0 47,725 + Psyr_0045 0.89 +0.1 47,725 + Psyr_0045 0.89 +1.5 47,726 - Psyr_0045 0.90 -0.5 47,726 - Psyr_0045 0.90 -1.1 47,726 - Psyr_0045 0.90 -0.3 47,945 + +1.1 47,953 + +0.3 47,953 + +0.5 48,099 - Psyr_0046 0.56 -0.1 48,175 + Psyr_0046 0.82 +0.3 48,175 + Psyr_0046 0.82 +1.8 48,175 + Psyr_0046 0.82 +0.5 48,175 + Psyr_0046 0.82 -0.5 48,176 - Psyr_0046 0.82 +0.0 48,176 - Psyr_0046 0.82 -1.9 48,176 - Psyr_0046 0.82 -1.4 48,176 - Psyr_0046 0.82 +0.3 48,226 - +2.1 48,235 + -0.5 48,235 + +0.3 48,235 + -1.4 48,235 + -0.9 48,236 - +0.8 48,236 - -0.6 48,236 - -1.0 48,236 - +1.6 48,236 - +0.8 48,236 - +0.1 48,240 - +0.2 48,270 + -0.4 48,270 + -0.3 48,270 + +0.5 48,270 + -1.8 48,271 - -0.1 48,271 - -0.5 48,273 + -0.6 48,273 + -0.4 48,273 + +0.4 48,273 + +0.1 48,273 + +0.8 48,273 + +0.9 48,273 + -1.0 48,274 - +0.7 48,274 - -1.5 48,274 - +0.4 48,277 + -1.5 48,277 + +1.0 48,348 + Psyr_0047 0.25 +1.2 48,348 + Psyr_0047 0.25 -1.9 48,349 - Psyr_0047 0.25 +0.5 48,368 + Psyr_0047 0.32 -0.0 48,368 + Psyr_0047 0.32 +0.1 48,368 + Psyr_0047 0.32 +1.8 48,369 - Psyr_0047 0.32 +0.2 48,369 - Psyr_0047 0.32 +0.4 48,447 + Psyr_0047 0.58 -0.2 48,447 + Psyr_0047 0.58 -1.5 48,447 + Psyr_0047 0.58 -0.7 48,448 - Psyr_0047 0.58 -0.1 48,448 - Psyr_0047 0.58 +1.1 48,448 - Psyr_0047 0.58 +0.2 48,448 - Psyr_0047 0.58 -0.6 48,448 - Psyr_0047 0.58 +0.4 48,448 - Psyr_0047 0.58 -0.1 48,448 - Psyr_0047 0.58 +0.8 48,451 + Psyr_0047 0.59 -1.4 48,464 + Psyr_0047 0.63 +0.6 48,465 - Psyr_0047 0.64 +0.9 48,468 + Psyr_0047 0.65 +0.7 48,468 + Psyr_0047 0.65 -0.8 48,468 + Psyr_0047 0.65 +1.3 48,468 + Psyr_0047 0.65 +0.0 48,468 + Psyr_0047 0.65 -1.2 48,469 - Psyr_0047 0.65 +0.7 48,469 - Psyr_0047 0.65 -0.1 48,469 - Psyr_0047 0.65 +0.2 48,469 - Psyr_0047 0.65 -1.1 48,512 + Psyr_0047 0.79 -0.6 48,523 + Psyr_0047 0.83 -0.7 48,568 + -1.2 48,568 + +1.1 48,569 - -0.6 48,592 - +0.7 48,635 + -1.0 48,635 + +1.4 48,635 + +0.9 48,636 - -1.1 48,636 - +1.1 48,636 - -0.2 48,636 - -0.1 48,669 + +1.4 48,834 - Psyr_0048 0.72 -1.4 48,885 + -0.3 48,885 + +0.6 48,886 - -0.2 48,886 - +0.0 48,886 - +0.7 48,886 - +0.1 48,886 - +2.7 48,886 - +0.3
Or see this region's nucleotide sequence