Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_776 and Pf6N2E2_777 are separated by 128 nucleotides Pf6N2E2_777 and Pf6N2E2_778 are separated by 76 nucleotides Pf6N2E2_778 and Pf6N2E2_779 overlap by 7 nucleotides
Pf6N2E2_776 - Transcriptional regulator, LysR family, at 885,831 to 886,739
_776
Pf6N2E2_777 - FMN-dependent NADH-azoreductase, at 886,868 to 887,476
_777
Pf6N2E2_778 - Probable lipoprotein signal peptide, at 887,553 to 888,698
_778
Pf6N2E2_779 - transporter, putative, at 888,692 to 889,885
_779
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1 at 886.714 kb on + strand at 886.714 kb on + strand at 886.714 kb on + strand at 886.717 kb on + strand at 886.717 kb on + strand at 886.718 kb on - strand at 886.718 kb on - strand at 886.773 kb on + strand at 886.774 kb on - strand at 886.811 kb on - strand at 886.814 kb on + strand at 886.814 kb on + strand at 886.868 kb on - strand at 886.876 kb on - strand at 886.978 kb on + strand, within Pf6N2E2_777 at 886.983 kb on - strand, within Pf6N2E2_777 at 886.983 kb on - strand, within Pf6N2E2_777 at 887.045 kb on - strand, within Pf6N2E2_777 at 887.092 kb on + strand, within Pf6N2E2_777 at 887.153 kb on + strand, within Pf6N2E2_777 at 887.154 kb on - strand, within Pf6N2E2_777 at 887.333 kb on + strand, within Pf6N2E2_777 at 887.333 kb on + strand, within Pf6N2E2_777 at 887.333 kb on + strand, within Pf6N2E2_777 at 887.334 kb on - strand, within Pf6N2E2_777 at 887.359 kb on - strand, within Pf6N2E2_777 at 887.423 kb on - strand at 887.486 kb on - strand at 887.486 kb on - strand at 887.516 kb on + strand at 887.516 kb on + strand at 887.516 kb on + strand at 887.517 kb on - strand at 887.527 kb on - strand at 887.565 kb on - strand at 887.565 kb on - strand at 887.565 kb on - strand at 887.599 kb on - strand at 887.666 kb on - strand at 887.817 kb on + strand, within Pf6N2E2_778 at 887.817 kb on + strand, within Pf6N2E2_778 at 887.911 kb on + strand, within Pf6N2E2_778 at 888.063 kb on + strand, within Pf6N2E2_778 at 888.163 kb on - strand, within Pf6N2E2_778 at 888.270 kb on - strand, within Pf6N2E2_778 at 888.377 kb on + strand, within Pf6N2E2_778 at 888.378 kb on - strand, within Pf6N2E2_778 at 888.412 kb on - strand, within Pf6N2E2_778 at 888.697 kb on - strand at 888.709 kb on + strand at 888.710 kb on - strand at 888.710 kb on - strand at 888.710 kb on - strand at 888.710 kb on - strand at 888.859 kb on - strand, within Pf6N2E2_779 at 888.928 kb on - strand, within Pf6N2E2_779 at 889.086 kb on - strand, within Pf6N2E2_779 at 889.158 kb on + strand, within Pf6N2E2_779 at 889.159 kb on - strand, within Pf6N2E2_779 at 889.414 kb on - strand, within Pf6N2E2_779 at 889.414 kb on - strand, within Pf6N2E2_779
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 886,714 + +0.7 886,714 + -0.2 886,714 + -0.4 886,717 + +1.1 886,717 + -0.2 886,718 - +0.9 886,718 - +0.4 886,773 + +0.3 886,774 - +0.1 886,811 - -1.0 886,814 + -0.6 886,814 + +0.0 886,868 - -0.5 886,876 - +1.2 886,978 + Pf6N2E2_777 0.18 -0.7 886,983 - Pf6N2E2_777 0.19 +0.6 886,983 - Pf6N2E2_777 0.19 +0.6 887,045 - Pf6N2E2_777 0.29 +1.2 887,092 + Pf6N2E2_777 0.37 +1.7 887,153 + Pf6N2E2_777 0.47 +0.4 887,154 - Pf6N2E2_777 0.47 +0.3 887,333 + Pf6N2E2_777 0.76 +0.6 887,333 + Pf6N2E2_777 0.76 -0.4 887,333 + Pf6N2E2_777 0.76 +0.2 887,334 - Pf6N2E2_777 0.77 -0.8 887,359 - Pf6N2E2_777 0.81 -1.6 887,423 - -0.8 887,486 - +0.8 887,486 - +0.5 887,516 + +0.2 887,516 + +0.1 887,516 + +0.2 887,517 - +0.5 887,527 - +1.6 887,565 - +0.1 887,565 - -0.1 887,565 - -1.1 887,599 - -0.2 887,666 - +1.4 887,817 + Pf6N2E2_778 0.23 +0.7 887,817 + Pf6N2E2_778 0.23 -2.0 887,911 + Pf6N2E2_778 0.31 -2.1 888,063 + Pf6N2E2_778 0.45 -0.5 888,163 - Pf6N2E2_778 0.53 -0.9 888,270 - Pf6N2E2_778 0.63 -0.0 888,377 + Pf6N2E2_778 0.72 -0.9 888,378 - Pf6N2E2_778 0.72 -0.3 888,412 - Pf6N2E2_778 0.75 -0.7 888,697 - -0.6 888,709 + -2.6 888,710 - -0.3 888,710 - -0.5 888,710 - +0.9 888,710 - +0.9 888,859 - Pf6N2E2_779 0.14 -0.4 888,928 - Pf6N2E2_779 0.20 -0.1 889,086 - Pf6N2E2_779 0.33 -0.7 889,158 + Pf6N2E2_779 0.39 +1.1 889,159 - Pf6N2E2_779 0.39 -0.5 889,414 - Pf6N2E2_779 0.60 +0.9 889,414 - Pf6N2E2_779 0.60 +1.0
Or see this region's nucleotide sequence