Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2137 and Pf6N2E2_2138 are separated by 323 nucleotides Pf6N2E2_2138 and Pf6N2E2_2139 are separated by 69 nucleotides Pf6N2E2_2139 and Pf6N2E2_2140 overlap by 4 nucleotides Pf6N2E2_2140 and Pf6N2E2_2141 overlap by 20 nucleotides
Pf6N2E2_2137 - DNA polymerase II (EC 2.7.7.7), at 2,542,575 to 2,544,938
_2137
Pf6N2E2_2138 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205), at 2,545,262 to 2,545,702
_2138
Pf6N2E2_2139 - Paraquat-inducible protein A, at 2,545,772 to 2,546,368
_2139
Pf6N2E2_2140 - Paraquat-inducible protein A, at 2,546,365 to 2,547,024
_2140
Pf6N2E2_2141 - Paraquat-inducible protein B, at 2,547,005 to 2,548,663
_2141
Position (kb)
2545
2546
2547 Strain fitness (log2 ratio)
-2
-1
0
1 at 2544.930 kb on + strand at 2544.930 kb on + strand at 2544.974 kb on + strand at 2544.975 kb on - strand at 2544.975 kb on - strand at 2545.218 kb on - strand at 2545.218 kb on - strand at 2545.227 kb on + strand at 2545.228 kb on - strand at 2545.228 kb on - strand at 2545.290 kb on + strand at 2545.291 kb on - strand at 2545.341 kb on + strand, within Pf6N2E2_2138 at 2545.341 kb on + strand, within Pf6N2E2_2138 at 2545.341 kb on + strand, within Pf6N2E2_2138 at 2545.342 kb on - strand, within Pf6N2E2_2138 at 2545.342 kb on - strand, within Pf6N2E2_2138 at 2545.436 kb on + strand, within Pf6N2E2_2138 at 2545.437 kb on - strand, within Pf6N2E2_2138 at 2545.685 kb on + strand at 2545.685 kb on + strand at 2545.685 kb on + strand at 2545.686 kb on - strand at 2545.686 kb on - strand at 2545.686 kb on - strand at 2545.686 kb on - strand at 2545.739 kb on + strand at 2545.739 kb on + strand at 2545.739 kb on + strand at 2545.739 kb on + strand at 2545.739 kb on + strand at 2545.739 kb on + strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.740 kb on - strand at 2545.742 kb on - strand at 2545.818 kb on + strand at 2545.819 kb on - strand at 2545.820 kb on + strand at 2545.821 kb on - strand at 2545.889 kb on + strand, within Pf6N2E2_2139 at 2545.965 kb on - strand, within Pf6N2E2_2139 at 2546.138 kb on + strand, within Pf6N2E2_2139 at 2546.139 kb on - strand, within Pf6N2E2_2139 at 2546.533 kb on + strand, within Pf6N2E2_2140 at 2546.533 kb on + strand, within Pf6N2E2_2140 at 2546.533 kb on + strand, within Pf6N2E2_2140 at 2546.534 kb on - strand, within Pf6N2E2_2140 at 2546.534 kb on - strand, within Pf6N2E2_2140 at 2546.557 kb on + strand, within Pf6N2E2_2140 at 2546.557 kb on + strand, within Pf6N2E2_2140 at 2546.558 kb on - strand, within Pf6N2E2_2140 at 2546.680 kb on - strand, within Pf6N2E2_2140 at 2547.351 kb on + strand, within Pf6N2E2_2141
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,544,930 + -0.1 2,544,930 + +1.3 2,544,974 + +1.2 2,544,975 - -0.2 2,544,975 - +1.3 2,545,218 - -0.3 2,545,218 - +0.2 2,545,227 + +0.8 2,545,228 - -0.0 2,545,228 - -2.2 2,545,290 + +0.2 2,545,291 - +0.3 2,545,341 + Pf6N2E2_2138 0.18 +1.6 2,545,341 + Pf6N2E2_2138 0.18 -0.6 2,545,341 + Pf6N2E2_2138 0.18 +0.0 2,545,342 - Pf6N2E2_2138 0.18 -1.5 2,545,342 - Pf6N2E2_2138 0.18 +1.2 2,545,436 + Pf6N2E2_2138 0.39 +0.4 2,545,437 - Pf6N2E2_2138 0.40 +0.6 2,545,685 + -1.2 2,545,685 + +0.4 2,545,685 + -0.4 2,545,686 - +1.0 2,545,686 - +0.1 2,545,686 - -0.6 2,545,686 - +0.3 2,545,739 + +0.6 2,545,739 + +0.7 2,545,739 + +0.6 2,545,739 + -1.2 2,545,739 + -1.2 2,545,739 + -0.6 2,545,740 - +1.1 2,545,740 - +0.3 2,545,740 - +0.9 2,545,740 - +0.5 2,545,740 - -0.3 2,545,740 - -0.1 2,545,740 - -0.8 2,545,740 - +0.2 2,545,740 - -0.8 2,545,740 - +0.3 2,545,740 - +0.2 2,545,740 - +0.0 2,545,742 - +0.6 2,545,818 + -0.1 2,545,819 - +0.4 2,545,820 + -0.7 2,545,821 - -0.1 2,545,889 + Pf6N2E2_2139 0.20 -0.5 2,545,965 - Pf6N2E2_2139 0.32 -1.0 2,546,138 + Pf6N2E2_2139 0.61 -0.5 2,546,139 - Pf6N2E2_2139 0.61 -0.2 2,546,533 + Pf6N2E2_2140 0.25 -0.8 2,546,533 + Pf6N2E2_2140 0.25 -0.0 2,546,533 + Pf6N2E2_2140 0.25 +0.4 2,546,534 - Pf6N2E2_2140 0.26 +0.1 2,546,534 - Pf6N2E2_2140 0.26 -0.1 2,546,557 + Pf6N2E2_2140 0.29 +0.9 2,546,557 + Pf6N2E2_2140 0.29 -0.0 2,546,558 - Pf6N2E2_2140 0.29 -0.1 2,546,680 - Pf6N2E2_2140 0.48 -0.2 2,547,351 + Pf6N2E2_2141 0.21 -0.1
Or see this region's nucleotide sequence