Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_843

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_842 and Pf1N1B4_843 are separated by 100 nucleotidesPf1N1B4_843 and Pf1N1B4_844 are separated by 59 nucleotides Pf1N1B4_842 - putative membrane protein, at 970,424 to 971,191 _842 Pf1N1B4_843 - Transcriptional regulator, LysR family, at 971,292 to 972,242 _843 Pf1N1B4_844 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 972,302 to 973,708 _844 Position (kb) 971 972 973Strain fitness (log2 ratio) -2 -1 0 1 2at 970.329 kb on + strandat 970.329 kb on + strandat 970.330 kb on - strandat 970.330 kb on - strandat 970.405 kb on - strandat 970.405 kb on - strandat 970.437 kb on + strandat 970.438 kb on - strandat 970.438 kb on - strandat 970.599 kb on + strand, within Pf1N1B4_842at 970.599 kb on + strandat 970.600 kb on - strand, within Pf1N1B4_842at 970.704 kb on + strand, within Pf1N1B4_842at 970.705 kb on - strand, within Pf1N1B4_842at 970.705 kb on - strand, within Pf1N1B4_842at 970.705 kb on - strand, within Pf1N1B4_842at 970.705 kb on - strand, within Pf1N1B4_842at 970.705 kb on - strand, within Pf1N1B4_842at 970.713 kb on + strand, within Pf1N1B4_842at 970.714 kb on - strand, within Pf1N1B4_842at 970.715 kb on + strand, within Pf1N1B4_842at 970.716 kb on - strand, within Pf1N1B4_842at 970.811 kb on - strand, within Pf1N1B4_842at 970.811 kb on - strand, within Pf1N1B4_842at 970.824 kb on + strand, within Pf1N1B4_842at 971.102 kb on + strand, within Pf1N1B4_842at 971.109 kb on + strand, within Pf1N1B4_842at 971.109 kb on + strand, within Pf1N1B4_842at 971.109 kb on + strand, within Pf1N1B4_842at 971.109 kb on + strandat 971.110 kb on - strand, within Pf1N1B4_842at 971.110 kb on - strand, within Pf1N1B4_842at 971.110 kb on - strand, within Pf1N1B4_842at 971.110 kb on - strand, within Pf1N1B4_842at 971.110 kb on - strand, within Pf1N1B4_842at 971.174 kb on + strandat 971.175 kb on - strandat 971.175 kb on - strandat 971.208 kb on + strandat 971.209 kb on - strandat 971.248 kb on + strandat 971.251 kb on + strandat 971.251 kb on + strandat 971.252 kb on - strandat 971.367 kb on + strandat 971.372 kb on + strandat 971.540 kb on + strand, within Pf1N1B4_843at 971.541 kb on - strand, within Pf1N1B4_843at 971.600 kb on + strand, within Pf1N1B4_843at 971.600 kb on + strand, within Pf1N1B4_843at 971.601 kb on - strand, within Pf1N1B4_843at 971.601 kb on - strand, within Pf1N1B4_843at 971.634 kb on + strand, within Pf1N1B4_843at 971.784 kb on + strand, within Pf1N1B4_843at 971.784 kb on + strand, within Pf1N1B4_843at 971.784 kb on + strand, within Pf1N1B4_843at 971.816 kb on + strand, within Pf1N1B4_843at 971.816 kb on + strandat 971.922 kb on + strand, within Pf1N1B4_843at 971.922 kb on + strand, within Pf1N1B4_843at 971.922 kb on + strand, within Pf1N1B4_843at 971.922 kb on + strand, within Pf1N1B4_843at 971.923 kb on - strand, within Pf1N1B4_843at 972.161 kb on + strandat 972.161 kb on + strandat 972.161 kb on + strandat 972.161 kb on + strandat 972.162 kb on - strandat 972.162 kb on - strandat 972.167 kb on + strandat 972.167 kb on + strandat 972.168 kb on - strandat 972.168 kb on - strandat 972.168 kb on - strandat 972.227 kb on + strandat 972.228 kb on - strandat 972.228 kb on - strandat 972.228 kb on - strandat 972.241 kb on - strandat 972.316 kb on + strandat 972.317 kb on - strandat 972.334 kb on + strandat 972.453 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.630 kb on - strand, within Pf1N1B4_844at 973.237 kb on + strand, within Pf1N1B4_844at 973.238 kb on - strand, within Pf1N1B4_844at 973.238 kb on - strand, within Pf1N1B4_844

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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970,329 + +0.7
970,329 + +0.0
970,330 - -0.4
970,330 - +0.7
970,405 - -0.4
970,405 - -0.9
970,437 + -1.2
970,438 - +0.8
970,438 - -1.4
970,599 + Pf1N1B4_842 0.23 -0.6
970,599 + +1.4
970,600 - Pf1N1B4_842 0.23 -0.0
970,704 + Pf1N1B4_842 0.36 -0.3
970,705 - Pf1N1B4_842 0.37 -0.2
970,705 - Pf1N1B4_842 0.37 +0.2
970,705 - Pf1N1B4_842 0.37 -0.8
970,705 - Pf1N1B4_842 0.37 -0.2
970,705 - Pf1N1B4_842 0.37 +0.1
970,713 + Pf1N1B4_842 0.38 -1.3
970,714 - Pf1N1B4_842 0.38 -0.2
970,715 + Pf1N1B4_842 0.38 -1.6
970,716 - Pf1N1B4_842 0.38 +1.2
970,811 - Pf1N1B4_842 0.50 -1.4
970,811 - Pf1N1B4_842 0.50 -0.8
970,824 + Pf1N1B4_842 0.52 -0.6
971,102 + Pf1N1B4_842 0.88 -0.3
971,109 + Pf1N1B4_842 0.89 +0.7
971,109 + Pf1N1B4_842 0.89 +0.8
971,109 + Pf1N1B4_842 0.89 -1.4
971,109 + +0.1
971,110 - Pf1N1B4_842 0.89 -0.5
971,110 - Pf1N1B4_842 0.89 -0.7
971,110 - Pf1N1B4_842 0.89 -0.5
971,110 - Pf1N1B4_842 0.89 +2.0
971,110 - Pf1N1B4_842 0.89 +0.3
971,174 + -0.6
971,175 - -0.3
971,175 - +1.2
971,208 + -0.3
971,209 - +0.2
971,248 + +1.8
971,251 + +1.0
971,251 + -1.9
971,252 - +0.4
971,367 + +0.4
971,372 + +0.4
971,540 + Pf1N1B4_843 0.26 +1.8
971,541 - Pf1N1B4_843 0.26 -0.2
971,600 + Pf1N1B4_843 0.32 +0.4
971,600 + Pf1N1B4_843 0.32 -1.0
971,601 - Pf1N1B4_843 0.32 +1.1
971,601 - Pf1N1B4_843 0.32 -0.6
971,634 + Pf1N1B4_843 0.36 +0.4
971,784 + Pf1N1B4_843 0.52 +0.6
971,784 + Pf1N1B4_843 0.52 +1.4
971,784 + Pf1N1B4_843 0.52 +1.0
971,816 + Pf1N1B4_843 0.55 -0.2
971,816 + -1.2
971,922 + Pf1N1B4_843 0.66 +1.4
971,922 + Pf1N1B4_843 0.66 +1.8
971,922 + Pf1N1B4_843 0.66 +0.2
971,922 + Pf1N1B4_843 0.66 +1.4
971,923 - Pf1N1B4_843 0.66 -1.4
972,161 + -0.2
972,161 + +0.8
972,161 + +0.3
972,161 + +0.4
972,162 - +0.4
972,162 - -0.2
972,167 + -0.1
972,167 + -1.5
972,168 - -0.0
972,168 - -1.5
972,168 - +0.0
972,227 + +0.4
972,228 - -0.3
972,228 - -0.2
972,228 - +0.8
972,241 - +0.2
972,316 + +0.7
972,317 - -1.9
972,334 + -0.5
972,453 + Pf1N1B4_844 0.11 -0.4
972,488 + Pf1N1B4_844 0.13 +0.8
972,488 + Pf1N1B4_844 0.13 +0.0
972,488 + Pf1N1B4_844 0.13 -0.2
972,488 + Pf1N1B4_844 0.13 +0.2
972,488 + Pf1N1B4_844 0.13 +1.2
972,488 + Pf1N1B4_844 0.13 +0.2
972,489 - Pf1N1B4_844 0.13 +0.6
972,489 - Pf1N1B4_844 0.13 +0.1
972,489 - Pf1N1B4_844 0.13 -0.6
972,489 - Pf1N1B4_844 0.13 +1.1
972,489 - Pf1N1B4_844 0.13 -0.5
972,489 - Pf1N1B4_844 0.13 -0.6
972,489 - Pf1N1B4_844 0.13 -0.4
972,630 - Pf1N1B4_844 0.23 +1.7
973,237 + Pf1N1B4_844 0.66 -0.6
973,238 - Pf1N1B4_844 0.67 +0.1
973,238 - Pf1N1B4_844 0.67 +2.0

Or see this region's nucleotide sequence