Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5832 and Pf1N1B4_5833 are separated by 243 nucleotides Pf1N1B4_5833 and Pf1N1B4_5834 are separated by 36 nucleotides Pf1N1B4_5834 and Pf1N1B4_5835 are separated by 11 nucleotides
Pf1N1B4_5832 - LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase, at 266,702 to 267,601
_5832
Pf1N1B4_5833 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 267,845 to 268,543
_5833
Pf1N1B4_5834 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 268,580 to 269,245
_5834
Pf1N1B4_5835 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 269,257 to 270,438
_5835
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 267.026 kb on - strand, within Pf1N1B4_5832 at 267.120 kb on + strand, within Pf1N1B4_5832 at 267.121 kb on - strand, within Pf1N1B4_5832 at 267.173 kb on + strand, within Pf1N1B4_5832 at 267.831 kb on + strand at 267.832 kb on - strand at 267.832 kb on - strand at 267.832 kb on - strand at 267.832 kb on - strand at 267.844 kb on + strand at 267.845 kb on - strand at 267.845 kb on - strand at 267.870 kb on - strand at 268.083 kb on - strand, within Pf1N1B4_5833 at 268.275 kb on - strand, within Pf1N1B4_5833 at 268.478 kb on + strand at 268.478 kb on + strand at 268.478 kb on + strand at 268.478 kb on + strand at 268.479 kb on - strand at 268.479 kb on - strand at 268.572 kb on + strand at 268.640 kb on + strand at 268.640 kb on + strand at 268.640 kb on + strand at 268.641 kb on - strand at 268.682 kb on + strand, within Pf1N1B4_5834 at 268.682 kb on + strand, within Pf1N1B4_5834 at 268.683 kb on - strand, within Pf1N1B4_5834 at 268.683 kb on - strand, within Pf1N1B4_5834 at 268.683 kb on - strand, within Pf1N1B4_5834 at 269.423 kb on + strand, within Pf1N1B4_5835
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 267,026 - Pf1N1B4_5832 0.36 -0.2 267,120 + Pf1N1B4_5832 0.46 -1.6 267,121 - Pf1N1B4_5832 0.47 -1.6 267,173 + Pf1N1B4_5832 0.52 +3.0 267,831 + +0.4 267,832 - +0.7 267,832 - -0.6 267,832 - -0.0 267,832 - -0.6 267,844 + -1.4 267,845 - -0.6 267,845 - -1.2 267,870 - +1.5 268,083 - Pf1N1B4_5833 0.34 +0.5 268,275 - Pf1N1B4_5833 0.62 +1.0 268,478 + +0.1 268,478 + +2.5 268,478 + -0.2 268,478 + -1.2 268,479 - +0.5 268,479 - +0.6 268,572 + +0.3 268,640 + -0.0 268,640 + +0.1 268,640 + -0.7 268,641 - -0.5 268,682 + Pf1N1B4_5834 0.15 -0.9 268,682 + Pf1N1B4_5834 0.15 +0.1 268,683 - Pf1N1B4_5834 0.15 -2.2 268,683 - Pf1N1B4_5834 0.15 +0.1 268,683 - Pf1N1B4_5834 0.15 +1.0 269,423 + Pf1N1B4_5835 0.14 +0.4
Or see this region's nucleotide sequence