Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_535 and Pf1N1B4_536 are separated by 360 nucleotides Pf1N1B4_536 and Pf1N1B4_537 are separated by 209 nucleotides
Pf1N1B4_535 - FIG00953341: hypothetical protein, at 633,973 to 634,809
_535
Pf1N1B4_536 - FIG00953551: hypothetical protein, at 635,170 to 635,349
_536
Pf1N1B4_537 - FIG00959721: hypothetical protein, at 635,559 to 636,275
_537
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1
2 at 632.983 kb on + strand at 632.983 kb on + strand at 632.984 kb on - strand at 633.015 kb on + strand at 633.115 kb on + strand at 633.115 kb on + strand at 633.116 kb on - strand at 633.322 kb on - strand at 633.322 kb on - strand at 633.378 kb on - strand at 633.378 kb on - strand at 633.380 kb on - strand at 633.380 kb on - strand at 633.531 kb on + strand at 633.531 kb on + strand at 633.532 kb on - strand at 633.532 kb on - strand at 633.548 kb on + strand at 633.707 kb on - strand at 633.735 kb on + strand at 633.787 kb on - strand at 633.840 kb on + strand at 633.840 kb on + strand at 633.840 kb on + strand at 633.840 kb on + strand at 633.841 kb on - strand at 633.841 kb on - strand at 633.841 kb on - strand at 633.859 kb on + strand at 633.859 kb on + strand at 633.859 kb on + strand at 633.859 kb on + strand at 633.860 kb on - strand at 633.922 kb on + strand at 633.955 kb on + strand at 633.955 kb on + strand at 633.956 kb on - strand at 633.956 kb on - strand at 633.988 kb on - strand at 634.023 kb on - strand at 634.023 kb on - strand at 634.023 kb on - strand at 634.023 kb on - strand at 634.071 kb on + strand at 634.072 kb on - strand, within Pf1N1B4_535 at 634.072 kb on - strand, within Pf1N1B4_535 at 634.072 kb on - strand, within Pf1N1B4_535 at 634.162 kb on - strand, within Pf1N1B4_535 at 634.231 kb on - strand, within Pf1N1B4_535 at 634.231 kb on - strand, within Pf1N1B4_535 at 634.248 kb on + strand, within Pf1N1B4_535 at 634.376 kb on + strand, within Pf1N1B4_535 at 634.376 kb on + strand, within Pf1N1B4_535 at 634.377 kb on - strand at 634.377 kb on - strand, within Pf1N1B4_535 at 634.377 kb on - strand, within Pf1N1B4_535 at 634.377 kb on - strand, within Pf1N1B4_535 at 634.451 kb on + strand, within Pf1N1B4_535 at 634.451 kb on + strand, within Pf1N1B4_535 at 634.451 kb on + strand, within Pf1N1B4_535 at 634.452 kb on - strand, within Pf1N1B4_535 at 634.470 kb on - strand at 634.704 kb on - strand, within Pf1N1B4_535 at 634.749 kb on - strand at 634.751 kb on - strand at 634.841 kb on + strand at 635.052 kb on - strand at 635.101 kb on - strand at 635.128 kb on - strand at 635.153 kb on - strand at 635.177 kb on + strand at 635.347 kb on + strand at 635.361 kb on + strand at 635.500 kb on + strand at 635.500 kb on + strand at 635.518 kb on - strand at 635.760 kb on + strand at 635.760 kb on + strand, within Pf1N1B4_537 at 635.760 kb on + strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 632,983 + +0.9 632,983 + +0.5 632,984 - +1.3 633,015 + +0.3 633,115 + -1.6 633,115 + +0.8 633,116 - -0.3 633,322 - +1.3 633,322 - +0.7 633,378 - -0.3 633,378 - +0.3 633,380 - +0.4 633,380 - +0.2 633,531 + -0.1 633,531 + +1.3 633,532 - -0.6 633,532 - -0.7 633,548 + -1.7 633,707 - +0.9 633,735 + -0.0 633,787 - -0.3 633,840 + -0.3 633,840 + -0.8 633,840 + -2.1 633,840 + -1.4 633,841 - +0.3 633,841 - -2.5 633,841 - -1.3 633,859 + -0.3 633,859 + +0.1 633,859 + -0.6 633,859 + +0.4 633,860 - +1.6 633,922 + -1.5 633,955 + +0.2 633,955 + +0.3 633,956 - +0.9 633,956 - -0.0 633,988 - -1.3 634,023 - -0.3 634,023 - +1.9 634,023 - +1.3 634,023 - -0.3 634,071 + +1.3 634,072 - Pf1N1B4_535 0.12 -0.1 634,072 - Pf1N1B4_535 0.12 -1.3 634,072 - Pf1N1B4_535 0.12 -1.3 634,162 - Pf1N1B4_535 0.23 -0.5 634,231 - Pf1N1B4_535 0.31 +1.0 634,231 - Pf1N1B4_535 0.31 +0.8 634,248 + Pf1N1B4_535 0.33 +0.8 634,376 + Pf1N1B4_535 0.48 -0.0 634,376 + Pf1N1B4_535 0.48 +1.9 634,377 - +0.7 634,377 - Pf1N1B4_535 0.48 +0.4 634,377 - Pf1N1B4_535 0.48 +1.0 634,377 - Pf1N1B4_535 0.48 +2.3 634,451 + Pf1N1B4_535 0.57 -0.3 634,451 + Pf1N1B4_535 0.57 +0.3 634,451 + Pf1N1B4_535 0.57 +0.1 634,452 - Pf1N1B4_535 0.57 +1.1 634,470 - +1.3 634,704 - Pf1N1B4_535 0.87 +2.3 634,749 - +1.3 634,751 - -0.8 634,841 + -0.4 635,052 - -1.5 635,101 - +0.6 635,128 - +1.3 635,153 - -0.3 635,177 + +0.9 635,347 + -1.3 635,361 + +1.3 635,500 + +1.3 635,500 + +0.3 635,518 - -1.1 635,760 + -0.3 635,760 + Pf1N1B4_537 0.28 -0.0 635,760 + Pf1N1B4_537 0.28 -0.0 635,761 - Pf1N1B4_537 0.28 -0.5 635,761 - Pf1N1B4_537 0.28 +0.1 635,761 - Pf1N1B4_537 0.28 -0.1 635,761 - Pf1N1B4_537 0.28 -2.3 635,761 - Pf1N1B4_537 0.28 +0.3 635,761 - Pf1N1B4_537 0.28 +0.7 635,761 - Pf1N1B4_537 0.28 +0.3 635,761 - Pf1N1B4_537 0.28 -0.7 635,761 - Pf1N1B4_537 0.28 -0.6 635,761 - Pf1N1B4_537 0.28 -0.0 635,761 - Pf1N1B4_537 0.28 -1.3 635,761 - Pf1N1B4_537 0.28 -0.3 635,761 - Pf1N1B4_537 0.28 -1.3
Or see this region's nucleotide sequence