Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5348

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5346 and Pf1N1B4_5347 are separated by 136 nucleotidesPf1N1B4_5347 and Pf1N1B4_5348 are separated by 101 nucleotidesPf1N1B4_5348 and Pf1N1B4_5349 are separated by 741 nucleotides Pf1N1B4_5346 - hypothetical protein, at 87,155 to 87,868 _5346 Pf1N1B4_5347 - hypothetical protein, at 88,005 to 88,352 _5347 Pf1N1B4_5348 - hypothetical protein, at 88,454 to 88,576 _5348 Pf1N1B4_5349 - hypothetical protein, at 89,318 to 89,953 _5349 Position (kb) 88 89Strain fitness (log2 ratio) -1 0 1 2at 87.597 kb on + strand, within Pf1N1B4_5346at 87.835 kb on + strandat 87.914 kb on + strandat 87.914 kb on + strandat 87.914 kb on + strandat 87.915 kb on - strandat 87.920 kb on + strandat 87.986 kb on - strandat 88.016 kb on - strandat 88.495 kb on - strand, within Pf1N1B4_5348at 88.495 kb on - strand, within Pf1N1B4_5348at 88.495 kb on - strand, within Pf1N1B4_5348at 88.560 kb on - strandat 88.560 kb on - strand, within Pf1N1B4_5348at 88.642 kb on - strandat 88.671 kb on + strandat 88.672 kb on - strandat 88.793 kb on - strandat 88.803 kb on + strandat 88.804 kb on - strandat 88.859 kb on - strandat 88.874 kb on + strandat 88.874 kb on + strandat 88.875 kb on - strandat 88.875 kb on - strandat 88.893 kb on + strandat 88.970 kb on + strandat 88.970 kb on + strandat 88.970 kb on + strandat 88.970 kb on + strandat 88.971 kb on - strandat 88.971 kb on - strandat 88.971 kb on - strandat 88.976 kb on + strandat 88.976 kb on + strandat 88.976 kb on + strandat 88.976 kb on + strandat 88.977 kb on - strandat 89.028 kb on - strandat 89.028 kb on - strandat 89.270 kb on + strandat 89.270 kb on + strandat 89.271 kb on - strandat 89.271 kb on - strandat 89.300 kb on - strandat 89.390 kb on - strand, within Pf1N1B4_5349at 89.390 kb on - strand, within Pf1N1B4_5349at 89.390 kb on - strandat 89.506 kb on - strand, within Pf1N1B4_5349at 89.506 kb on - strand, within Pf1N1B4_5349at 89.534 kb on + strand, within Pf1N1B4_5349

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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87,597 + Pf1N1B4_5346 0.62 +1.5
87,835 + -0.7
87,914 + -0.9
87,914 + -0.3
87,914 + -1.1
87,915 - -0.7
87,920 + -1.1
87,986 - +1.9
88,016 - -0.3
88,495 - Pf1N1B4_5348 0.33 -0.9
88,495 - Pf1N1B4_5348 0.33 -0.7
88,495 - Pf1N1B4_5348 0.33 -0.3
88,560 - -0.1
88,560 - Pf1N1B4_5348 0.86 -0.6
88,642 - -0.9
88,671 + +1.7
88,672 - +0.3
88,793 - -1.1
88,803 + -0.4
88,804 - -0.0
88,859 - -0.9
88,874 + +2.5
88,874 + -0.5
88,875 - +2.7
88,875 - +1.3
88,893 + -1.3
88,970 + +1.2
88,970 + +0.3
88,970 + -0.1
88,970 + -0.3
88,971 - +0.2
88,971 - -0.7
88,971 - -0.6
88,976 + -0.1
88,976 + +0.1
88,976 + +0.1
88,976 + +0.1
88,977 - +0.9
89,028 - -1.0
89,028 - +0.9
89,270 + -1.2
89,270 + +0.6
89,271 - +0.9
89,271 - +1.5
89,300 - +0.3
89,390 - Pf1N1B4_5349 0.11 +1.1
89,390 - Pf1N1B4_5349 0.11 -0.9
89,390 - +1.3
89,506 - Pf1N1B4_5349 0.30 +0.5
89,506 - Pf1N1B4_5349 0.30 +0.9
89,534 + Pf1N1B4_5349 0.34 -0.7

Or see this region's nucleotide sequence