Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5346 and Pf1N1B4_5347 are separated by 136 nucleotides Pf1N1B4_5347 and Pf1N1B4_5348 are separated by 101 nucleotides Pf1N1B4_5348 and Pf1N1B4_5349 are separated by 741 nucleotides
Pf1N1B4_5346 - hypothetical protein, at 87,155 to 87,868
_5346
Pf1N1B4_5347 - hypothetical protein, at 88,005 to 88,352
_5347
Pf1N1B4_5348 - hypothetical protein, at 88,454 to 88,576
_5348
Pf1N1B4_5349 - hypothetical protein, at 89,318 to 89,953
_5349
Position (kb)
88
89 Strain fitness (log2 ratio)
-1
0
1
2 at 87.597 kb on + strand, within Pf1N1B4_5346 at 87.835 kb on + strand at 87.914 kb on + strand at 87.914 kb on + strand at 87.914 kb on + strand at 87.915 kb on - strand at 87.920 kb on + strand at 87.986 kb on - strand at 88.016 kb on - strand at 88.495 kb on - strand, within Pf1N1B4_5348 at 88.495 kb on - strand, within Pf1N1B4_5348 at 88.495 kb on - strand, within Pf1N1B4_5348 at 88.560 kb on - strand at 88.560 kb on - strand, within Pf1N1B4_5348 at 88.642 kb on - strand at 88.671 kb on + strand at 88.672 kb on - strand at 88.793 kb on - strand at 88.803 kb on + strand at 88.804 kb on - strand at 88.859 kb on - strand at 88.874 kb on + strand at 88.874 kb on + strand at 88.875 kb on - strand at 88.875 kb on - strand at 88.893 kb on + strand at 88.970 kb on + strand at 88.970 kb on + strand at 88.970 kb on + strand at 88.970 kb on + strand at 88.971 kb on - strand at 88.971 kb on - strand at 88.971 kb on - strand at 88.976 kb on + strand at 88.976 kb on + strand at 88.976 kb on + strand at 88.976 kb on + strand at 88.977 kb on - strand at 89.028 kb on - strand at 89.028 kb on - strand at 89.270 kb on + strand at 89.270 kb on + strand at 89.271 kb on - strand at 89.271 kb on - strand at 89.300 kb on - strand at 89.390 kb on - strand, within Pf1N1B4_5349 at 89.390 kb on - strand, within Pf1N1B4_5349 at 89.390 kb on - strand at 89.506 kb on - strand, within Pf1N1B4_5349 at 89.506 kb on - strand, within Pf1N1B4_5349 at 89.534 kb on + strand, within Pf1N1B4_5349
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 87,597 + Pf1N1B4_5346 0.62 +1.5 87,835 + -0.7 87,914 + -0.9 87,914 + -0.3 87,914 + -1.1 87,915 - -0.7 87,920 + -1.1 87,986 - +1.9 88,016 - -0.3 88,495 - Pf1N1B4_5348 0.33 -0.9 88,495 - Pf1N1B4_5348 0.33 -0.7 88,495 - Pf1N1B4_5348 0.33 -0.3 88,560 - -0.1 88,560 - Pf1N1B4_5348 0.86 -0.6 88,642 - -0.9 88,671 + +1.7 88,672 - +0.3 88,793 - -1.1 88,803 + -0.4 88,804 - -0.0 88,859 - -0.9 88,874 + +2.5 88,874 + -0.5 88,875 - +2.7 88,875 - +1.3 88,893 + -1.3 88,970 + +1.2 88,970 + +0.3 88,970 + -0.1 88,970 + -0.3 88,971 - +0.2 88,971 - -0.7 88,971 - -0.6 88,976 + -0.1 88,976 + +0.1 88,976 + +0.1 88,976 + +0.1 88,977 - +0.9 89,028 - -1.0 89,028 - +0.9 89,270 + -1.2 89,270 + +0.6 89,271 - +0.9 89,271 - +1.5 89,300 - +0.3 89,390 - Pf1N1B4_5349 0.11 +1.1 89,390 - Pf1N1B4_5349 0.11 -0.9 89,390 - +1.3 89,506 - Pf1N1B4_5349 0.30 +0.5 89,506 - Pf1N1B4_5349 0.30 +0.9 89,534 + Pf1N1B4_5349 0.34 -0.7
Or see this region's nucleotide sequence