Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_53

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_51 and Pf1N1B4_52 are separated by 337 nucleotidesPf1N1B4_52 and Pf1N1B4_53 are separated by 6 nucleotidesPf1N1B4_53 and Pf1N1B4_54 are separated by 194 nucleotides Pf1N1B4_51 - hypothetical protein, at 57,079 to 57,348 _51 Pf1N1B4_52 - FIG00956056: hypothetical protein, at 57,686 to 58,144 _52 Pf1N1B4_53 - hypothetical protein, at 58,151 to 58,342 _53 Pf1N1B4_54 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 58,537 to 59,328 _54 Position (kb) 58 59Strain fitness (log2 ratio) -2 -1 0 1 2at 57.221 kb on + strand, within Pf1N1B4_51at 57.221 kb on + strand, within Pf1N1B4_51at 57.221 kb on + strandat 57.221 kb on + strand, within Pf1N1B4_51at 57.221 kb on + strand, within Pf1N1B4_51at 57.221 kb on + strand, within Pf1N1B4_51at 57.221 kb on + strand, within Pf1N1B4_51at 57.222 kb on - strand, within Pf1N1B4_51at 57.222 kb on - strand, within Pf1N1B4_51at 57.409 kb on + strandat 57.432 kb on - strandat 57.504 kb on - strandat 57.512 kb on + strandat 57.512 kb on + strandat 57.513 kb on - strandat 57.603 kb on - strandat 57.603 kb on - strandat 57.717 kb on - strandat 57.717 kb on - strandat 57.875 kb on - strand, within Pf1N1B4_52at 58.055 kb on - strand, within Pf1N1B4_52at 58.072 kb on + strand, within Pf1N1B4_52at 58.093 kb on + strand, within Pf1N1B4_52at 58.142 kb on + strandat 58.182 kb on + strand, within Pf1N1B4_53at 58.186 kb on + strand, within Pf1N1B4_53at 58.202 kb on + strand, within Pf1N1B4_53at 58.202 kb on + strand, within Pf1N1B4_53at 58.206 kb on + strandat 58.206 kb on + strand, within Pf1N1B4_53at 58.206 kb on + strand, within Pf1N1B4_53at 58.206 kb on + strand, within Pf1N1B4_53at 58.206 kb on + strand, within Pf1N1B4_53at 58.207 kb on - strand, within Pf1N1B4_53at 58.272 kb on + strand, within Pf1N1B4_53at 58.352 kb on + strandat 58.388 kb on + strandat 58.389 kb on - strandat 58.389 kb on - strandat 58.426 kb on + strandat 58.427 kb on - strandat 58.427 kb on - strandat 58.548 kb on - strandat 58.684 kb on - strand, within Pf1N1B4_54at 58.684 kb on - strand, within Pf1N1B4_54at 58.684 kb on - strand, within Pf1N1B4_54at 58.709 kb on - strand, within Pf1N1B4_54at 59.132 kb on - strandat 59.145 kb on + strand, within Pf1N1B4_54at 59.181 kb on + strand, within Pf1N1B4_54at 59.182 kb on - strand, within Pf1N1B4_54at 59.189 kb on - strand, within Pf1N1B4_54at 59.203 kb on + strand, within Pf1N1B4_54at 59.203 kb on + strand, within Pf1N1B4_54at 59.239 kb on + strand, within Pf1N1B4_54at 59.239 kb on + strand, within Pf1N1B4_54at 59.239 kb on + strand, within Pf1N1B4_54at 59.239 kb on + strand, within Pf1N1B4_54at 59.239 kb on + strandat 59.239 kb on + strand, within Pf1N1B4_54at 59.239 kb on + strand, within Pf1N1B4_54at 59.239 kb on + strand, within Pf1N1B4_54at 59.282 kb on - strandat 59.282 kb on - strandat 59.322 kb on + strandat 59.322 kb on + strandat 59.326 kb on + strandat 59.326 kb on + strandat 59.326 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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57,221 + Pf1N1B4_51 0.53 +1.7
57,221 + Pf1N1B4_51 0.53 -0.2
57,221 + -0.5
57,221 + Pf1N1B4_51 0.53 -0.8
57,221 + Pf1N1B4_51 0.53 +0.1
57,221 + Pf1N1B4_51 0.53 -1.1
57,221 + Pf1N1B4_51 0.53 -0.9
57,222 - Pf1N1B4_51 0.53 -0.5
57,222 - Pf1N1B4_51 0.53 -0.1
57,409 + +1.1
57,432 - -0.5
57,504 - +0.1
57,512 + -0.5
57,512 + -0.5
57,513 - -0.1
57,603 - +0.5
57,603 - -0.7
57,717 - -0.2
57,717 - -0.9
57,875 - Pf1N1B4_52 0.41 -0.9
58,055 - Pf1N1B4_52 0.80 +0.7
58,072 + Pf1N1B4_52 0.84 +1.1
58,093 + Pf1N1B4_52 0.89 +0.8
58,142 + -0.7
58,182 + Pf1N1B4_53 0.16 +0.8
58,186 + Pf1N1B4_53 0.18 +1.4
58,202 + Pf1N1B4_53 0.27 -0.7
58,202 + Pf1N1B4_53 0.27 -0.9
58,206 + +0.1
58,206 + Pf1N1B4_53 0.29 +1.3
58,206 + Pf1N1B4_53 0.29 +1.4
58,206 + Pf1N1B4_53 0.29 +0.3
58,206 + Pf1N1B4_53 0.29 -1.5
58,207 - Pf1N1B4_53 0.29 +2.7
58,272 + Pf1N1B4_53 0.63 +0.1
58,352 + +0.4
58,388 + +0.4
58,389 - -0.2
58,389 - +1.1
58,426 + +0.4
58,427 - +0.1
58,427 - -2.1
58,548 - -0.0
58,684 - Pf1N1B4_54 0.19 +0.5
58,684 - Pf1N1B4_54 0.19 -0.0
58,684 - Pf1N1B4_54 0.19 -0.1
58,709 - Pf1N1B4_54 0.22 -1.3
59,132 - -0.5
59,145 + Pf1N1B4_54 0.77 -0.5
59,181 + Pf1N1B4_54 0.81 -2.1
59,182 - Pf1N1B4_54 0.81 +0.5
59,189 - Pf1N1B4_54 0.82 +1.7
59,203 + Pf1N1B4_54 0.84 +0.2
59,203 + Pf1N1B4_54 0.84 -0.5
59,239 + Pf1N1B4_54 0.89 -0.7
59,239 + Pf1N1B4_54 0.89 -0.1
59,239 + Pf1N1B4_54 0.89 +0.1
59,239 + Pf1N1B4_54 0.89 +0.4
59,239 + +1.1
59,239 + Pf1N1B4_54 0.89 -0.5
59,239 + Pf1N1B4_54 0.89 -0.5
59,239 + Pf1N1B4_54 0.89 -1.5
59,282 - +1.1
59,282 - -0.5
59,322 + -0.1
59,322 + +0.5
59,326 + +0.1
59,326 + +0.7
59,326 + +0.7

Or see this region's nucleotide sequence