Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5170 and Pf1N1B4_5171 are separated by 6 nucleotides Pf1N1B4_5171 and Pf1N1B4_5172 are separated by 107 nucleotides Pf1N1B4_5172 and Pf1N1B4_5173 are separated by 5 nucleotides Pf1N1B4_5173 and Pf1N1B4_507 are separated by 395 nucleotides Pf1N1B4_507 and Pf1N1B4_508 are separated by 193 nucleotides
Pf1N1B4_5170 - tRNA-Gly-GCC, at 597,787 to 597,859
_5170
Pf1N1B4_5171 - tRNA-Glu-TTC, at 597,866 to 597,938
_5171
Pf1N1B4_5172 - tRNA-Gly-GCC, at 598,046 to 598,118
_5172
Pf1N1B4_5173 - tRNA-Glu-TTC, at 598,124 to 598,195
_5173
Pf1N1B4_507 - FIG00956448: hypothetical protein, at 598,591 to 599,349
_507
Pf1N1B4_508 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 599,543 to 601,495
_508
Position (kb) 598
599
600 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 597.682 kb on + strand at 597.711 kb on - strand at 597.735 kb on + strand at 597.995 kb on - strand at 598.202 kb on - strand at 598.202 kb on - strand at 598.298 kb on - strand at 598.374 kb on + strand at 598.374 kb on + strand at 598.374 kb on + strand at 598.374 kb on + strand at 598.376 kb on + strand at 598.376 kb on + strand at 598.399 kb on + strand at 598.401 kb on + strand at 598.401 kb on + strand at 598.401 kb on + strand at 598.402 kb on - strand at 598.402 kb on - strand at 598.402 kb on - strand at 598.440 kb on + strand at 598.441 kb on - strand at 598.441 kb on - strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.449 kb on - strand at 598.449 kb on - strand at 598.449 kb on - strand at 598.449 kb on - strand at 598.452 kb on + strand at 598.452 kb on + strand at 598.452 kb on + strand at 598.452 kb on + strand at 598.453 kb on - strand at 598.453 kb on - strand at 598.453 kb on - strand at 598.472 kb on - strand at 598.472 kb on - strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.474 kb on - strand at 598.474 kb on - strand at 598.532 kb on + strand at 598.532 kb on + strand at 598.532 kb on + strand at 598.532 kb on + strand at 598.532 kb on + strand at 598.533 kb on - strand at 598.533 kb on - strand at 598.533 kb on - strand at 598.533 kb on - strand at 598.535 kb on + strand at 598.536 kb on - strand at 598.536 kb on - strand at 598.562 kb on + strand at 598.562 kb on + strand at 598.563 kb on - strand at 598.563 kb on - strand at 598.604 kb on + strand at 598.605 kb on - strand at 598.626 kb on - strand at 598.642 kb on + strand at 598.642 kb on + strand at 598.642 kb on + strand at 598.643 kb on - strand at 598.668 kb on + strand, within Pf1N1B4_507 at 598.668 kb on + strand, within Pf1N1B4_507 at 598.669 kb on - strand, within Pf1N1B4_507 at 599.158 kb on + strand, within Pf1N1B4_507 at 599.207 kb on - strand, within Pf1N1B4_507 at 599.207 kb on - strand at 599.341 kb on + strand at 599.341 kb on + strand at 599.341 kb on + strand at 599.342 kb on - strand at 599.342 kb on - strand at 599.545 kb on - strand at 599.545 kb on - strand at 599.545 kb on - strand at 599.545 kb on - strand at 599.545 kb on - strand at 599.545 kb on - strand at 599.545 kb on - strand at 599.602 kb on + strand at 599.603 kb on - strand at 600.047 kb on + strand, within Pf1N1B4_508 at 600.217 kb on + strand, within Pf1N1B4_508
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 597,682 + -0.7 597,711 - +0.6 597,735 + +1.3 597,995 - -1.8 598,202 - -0.7 598,202 - -1.0 598,298 - +0.3 598,374 + +0.6 598,374 + +1.0 598,374 + +1.0 598,374 + +0.9 598,376 + +0.4 598,376 + -0.5 598,399 + -1.9 598,401 + -0.4 598,401 + -0.0 598,401 + -0.6 598,402 - -0.1 598,402 - +0.6 598,402 - -0.7 598,440 + -0.8 598,441 - -1.8 598,441 - -1.3 598,444 + -0.7 598,444 + -0.0 598,444 + -1.0 598,444 + +0.9 598,444 + -0.1 598,444 + -0.0 598,444 + +0.6 598,444 + -0.3 598,444 + +0.1 598,445 - +0.6 598,445 - +1.3 598,445 - +0.3 598,445 - -0.3 598,445 - -0.2 598,445 - +0.6 598,445 - +1.9 598,448 + +0.3 598,448 + -0.0 598,448 + -0.1 598,448 + -1.6 598,448 + -1.5 598,448 + -0.3 598,448 + +0.1 598,449 - +0.3 598,449 - +1.1 598,449 - -0.0 598,449 - -1.8 598,452 + -0.0 598,452 + -1.8 598,452 + -0.5 598,452 + -0.3 598,453 - -0.3 598,453 - -2.3 598,453 - +0.3 598,472 - +0.7 598,472 - -1.3 598,473 + +0.3 598,473 + -0.3 598,473 + -0.8 598,473 + +1.3 598,473 + -0.0 598,473 + -0.7 598,473 + -1.3 598,474 - +0.7 598,474 - +0.5 598,532 + -1.7 598,532 + +0.5 598,532 + -0.0 598,532 + -0.3 598,532 + -0.1 598,533 - +0.9 598,533 - +1.0 598,533 - -0.0 598,533 - -0.3 598,535 + -0.3 598,536 - +0.2 598,536 - +1.1 598,562 + +1.6 598,562 + +0.1 598,563 - +0.4 598,563 - -1.0 598,604 + +0.3 598,605 - +0.2 598,626 - +0.2 598,642 + -0.3 598,642 + -0.8 598,642 + +0.3 598,643 - -0.7 598,668 + Pf1N1B4_507 0.10 +0.3 598,668 + Pf1N1B4_507 0.10 -0.7 598,669 - Pf1N1B4_507 0.10 +0.9 599,158 + Pf1N1B4_507 0.75 +2.3 599,207 - Pf1N1B4_507 0.81 +2.9 599,207 - +0.3 599,341 + -0.3 599,341 + -0.0 599,341 + +0.3 599,342 - +0.4 599,342 - +0.6 599,545 - -1.1 599,545 - -0.0 599,545 - +0.5 599,545 - +0.7 599,545 - +1.0 599,545 - -1.8 599,545 - +0.7 599,602 + -1.3 599,603 - +0.9 600,047 + Pf1N1B4_508 0.26 -2.6 600,217 + Pf1N1B4_508 0.35 +0.3
Or see this region's nucleotide sequence