Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3658

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3657 and Pf1N1B4_3658 overlap by 11 nucleotidesPf1N1B4_3658 and Pf1N1B4_3659 are separated by 174 nucleotides Pf1N1B4_3657 - Pyruvate kinase (EC 2.7.1.40), at 4,061,736 to 4,063,151 _3657 Pf1N1B4_3658 - D-glycerate 2-kinase (EC 2.7.1.-), at 4,063,141 to 4,064,421 _3658 Pf1N1B4_3659 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 4,064,596 to 4,065,366 _3659 Position (kb) 4063 4064 4065Strain fitness (log2 ratio) -2 -1 0 1 2at 4062.737 kb on - strand, within Pf1N1B4_3657at 4062.777 kb on + strand, within Pf1N1B4_3657at 4062.798 kb on - strand, within Pf1N1B4_3657at 4062.968 kb on - strand, within Pf1N1B4_3657at 4063.055 kb on + strandat 4063.139 kb on + strandat 4063.244 kb on + strandat 4063.310 kb on + strand, within Pf1N1B4_3658at 4063.865 kb on - strand, within Pf1N1B4_3658at 4063.865 kb on - strand, within Pf1N1B4_3658at 4063.865 kb on - strand, within Pf1N1B4_3658at 4063.880 kb on + strand, within Pf1N1B4_3658at 4063.880 kb on + strand, within Pf1N1B4_3658at 4063.881 kb on - strand, within Pf1N1B4_3658at 4063.881 kb on - strand, within Pf1N1B4_3658at 4063.881 kb on - strand, within Pf1N1B4_3658at 4063.884 kb on + strand, within Pf1N1B4_3658at 4063.884 kb on + strand, within Pf1N1B4_3658at 4063.884 kb on + strandat 4063.884 kb on + strandat 4063.884 kb on + strand, within Pf1N1B4_3658at 4063.884 kb on + strand, within Pf1N1B4_3658at 4063.885 kb on - strand, within Pf1N1B4_3658at 4063.885 kb on - strand, within Pf1N1B4_3658at 4063.885 kb on - strand, within Pf1N1B4_3658at 4063.885 kb on - strand, within Pf1N1B4_3658at 4063.886 kb on + strand, within Pf1N1B4_3658at 4063.886 kb on + strand, within Pf1N1B4_3658at 4063.887 kb on - strand, within Pf1N1B4_3658at 4063.887 kb on - strand, within Pf1N1B4_3658at 4064.530 kb on - strandat 4064.576 kb on + strandat 4064.577 kb on - strandat 4064.577 kb on - strandat 4064.577 kb on - strandat 4064.597 kb on + strandat 4064.597 kb on + strandat 4064.597 kb on + strandat 4064.598 kb on - strandat 4064.598 kb on - strandat 4065.141 kb on - strand, within Pf1N1B4_3659

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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4,062,737 - Pf1N1B4_3657 0.71 +0.2
4,062,777 + Pf1N1B4_3657 0.74 -0.1
4,062,798 - Pf1N1B4_3657 0.75 -0.8
4,062,968 - Pf1N1B4_3657 0.87 +0.4
4,063,055 + -0.7
4,063,139 + -1.1
4,063,244 + -0.4
4,063,310 + Pf1N1B4_3658 0.13 +0.0
4,063,865 - Pf1N1B4_3658 0.57 +1.2
4,063,865 - Pf1N1B4_3658 0.57 -0.0
4,063,865 - Pf1N1B4_3658 0.57 +2.4
4,063,880 + Pf1N1B4_3658 0.58 -0.8
4,063,880 + Pf1N1B4_3658 0.58 -1.5
4,063,881 - Pf1N1B4_3658 0.58 +0.7
4,063,881 - Pf1N1B4_3658 0.58 +0.9
4,063,881 - Pf1N1B4_3658 0.58 -1.1
4,063,884 + Pf1N1B4_3658 0.58 +0.2
4,063,884 + Pf1N1B4_3658 0.58 +0.2
4,063,884 + +2.2
4,063,884 + -0.0
4,063,884 + Pf1N1B4_3658 0.58 +1.8
4,063,884 + Pf1N1B4_3658 0.58 +0.6
4,063,885 - Pf1N1B4_3658 0.58 -2.0
4,063,885 - Pf1N1B4_3658 0.58 -0.5
4,063,885 - Pf1N1B4_3658 0.58 +1.0
4,063,885 - Pf1N1B4_3658 0.58 +0.4
4,063,886 + Pf1N1B4_3658 0.58 +0.5
4,063,886 + Pf1N1B4_3658 0.58 -0.8
4,063,887 - Pf1N1B4_3658 0.58 +1.6
4,063,887 - Pf1N1B4_3658 0.58 -0.1
4,064,530 - +0.2
4,064,576 + +0.1
4,064,577 - +1.6
4,064,577 - -0.5
4,064,577 - +0.6
4,064,597 + -0.2
4,064,597 + +1.2
4,064,597 + -0.1
4,064,598 - -0.1
4,064,598 - +0.5
4,065,141 - Pf1N1B4_3659 0.71 -0.3

Or see this region's nucleotide sequence