Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3657 and Pf1N1B4_3658 overlap by 11 nucleotides Pf1N1B4_3658 and Pf1N1B4_3659 are separated by 174 nucleotides
Pf1N1B4_3657 - Pyruvate kinase (EC 2.7.1.40), at 4,061,736 to 4,063,151
_3657
Pf1N1B4_3658 - D-glycerate 2-kinase (EC 2.7.1.-), at 4,063,141 to 4,064,421
_3658
Pf1N1B4_3659 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 4,064,596 to 4,065,366
_3659
Position (kb)
4063
4064
4065 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4062.737 kb on - strand, within Pf1N1B4_3657 at 4062.777 kb on + strand, within Pf1N1B4_3657 at 4062.798 kb on - strand, within Pf1N1B4_3657 at 4062.968 kb on - strand, within Pf1N1B4_3657 at 4063.055 kb on + strand at 4063.139 kb on + strand at 4063.244 kb on + strand at 4063.310 kb on + strand, within Pf1N1B4_3658 at 4063.865 kb on - strand, within Pf1N1B4_3658 at 4063.865 kb on - strand, within Pf1N1B4_3658 at 4063.865 kb on - strand, within Pf1N1B4_3658 at 4063.880 kb on + strand, within Pf1N1B4_3658 at 4063.880 kb on + strand, within Pf1N1B4_3658 at 4063.881 kb on - strand, within Pf1N1B4_3658 at 4063.881 kb on - strand, within Pf1N1B4_3658 at 4063.881 kb on - strand, within Pf1N1B4_3658 at 4063.884 kb on + strand, within Pf1N1B4_3658 at 4063.884 kb on + strand, within Pf1N1B4_3658 at 4063.884 kb on + strand at 4063.884 kb on + strand at 4063.884 kb on + strand, within Pf1N1B4_3658 at 4063.884 kb on + strand, within Pf1N1B4_3658 at 4063.885 kb on - strand, within Pf1N1B4_3658 at 4063.885 kb on - strand, within Pf1N1B4_3658 at 4063.885 kb on - strand, within Pf1N1B4_3658 at 4063.885 kb on - strand, within Pf1N1B4_3658 at 4063.886 kb on + strand, within Pf1N1B4_3658 at 4063.886 kb on + strand, within Pf1N1B4_3658 at 4063.887 kb on - strand, within Pf1N1B4_3658 at 4063.887 kb on - strand, within Pf1N1B4_3658 at 4064.530 kb on - strand at 4064.576 kb on + strand at 4064.577 kb on - strand at 4064.577 kb on - strand at 4064.577 kb on - strand at 4064.597 kb on + strand at 4064.597 kb on + strand at 4064.597 kb on + strand at 4064.598 kb on - strand at 4064.598 kb on - strand at 4065.141 kb on - strand, within Pf1N1B4_3659
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 4,062,737 - Pf1N1B4_3657 0.71 +0.2 4,062,777 + Pf1N1B4_3657 0.74 -0.1 4,062,798 - Pf1N1B4_3657 0.75 -0.8 4,062,968 - Pf1N1B4_3657 0.87 +0.4 4,063,055 + -0.7 4,063,139 + -1.1 4,063,244 + -0.4 4,063,310 + Pf1N1B4_3658 0.13 +0.0 4,063,865 - Pf1N1B4_3658 0.57 +1.2 4,063,865 - Pf1N1B4_3658 0.57 -0.0 4,063,865 - Pf1N1B4_3658 0.57 +2.4 4,063,880 + Pf1N1B4_3658 0.58 -0.8 4,063,880 + Pf1N1B4_3658 0.58 -1.5 4,063,881 - Pf1N1B4_3658 0.58 +0.7 4,063,881 - Pf1N1B4_3658 0.58 +0.9 4,063,881 - Pf1N1B4_3658 0.58 -1.1 4,063,884 + Pf1N1B4_3658 0.58 +0.2 4,063,884 + Pf1N1B4_3658 0.58 +0.2 4,063,884 + +2.2 4,063,884 + -0.0 4,063,884 + Pf1N1B4_3658 0.58 +1.8 4,063,884 + Pf1N1B4_3658 0.58 +0.6 4,063,885 - Pf1N1B4_3658 0.58 -2.0 4,063,885 - Pf1N1B4_3658 0.58 -0.5 4,063,885 - Pf1N1B4_3658 0.58 +1.0 4,063,885 - Pf1N1B4_3658 0.58 +0.4 4,063,886 + Pf1N1B4_3658 0.58 +0.5 4,063,886 + Pf1N1B4_3658 0.58 -0.8 4,063,887 - Pf1N1B4_3658 0.58 +1.6 4,063,887 - Pf1N1B4_3658 0.58 -0.1 4,064,530 - +0.2 4,064,576 + +0.1 4,064,577 - +1.6 4,064,577 - -0.5 4,064,577 - +0.6 4,064,597 + -0.2 4,064,597 + +1.2 4,064,597 + -0.1 4,064,598 - -0.1 4,064,598 - +0.5 4,065,141 - Pf1N1B4_3659 0.71 -0.3
Or see this region's nucleotide sequence