Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1717 and Pf1N1B4_1718 are separated by 100 nucleotides Pf1N1B4_1718 and Pf1N1B4_1719 are separated by 127 nucleotides
Pf1N1B4_1717 - Fatty acid desaturase, at 1,964,895 to 1,965,968
_1717
Pf1N1B4_1718 - Transcriptional regulator, AraC family, at 1,966,069 to 1,967,073
_1718
Pf1N1B4_1719 - Protein hipA, at 1,967,201 to 1,967,959
_1719
Position (kb)
1966
1967
1968 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1965.181 kb on + strand, within Pf1N1B4_1717 at 1965.182 kb on - strand at 1965.182 kb on - strand, within Pf1N1B4_1717 at 1965.182 kb on - strand, within Pf1N1B4_1717 at 1965.182 kb on - strand, within Pf1N1B4_1717 at 1965.184 kb on + strand, within Pf1N1B4_1717 at 1965.184 kb on + strand, within Pf1N1B4_1717 at 1965.184 kb on + strand, within Pf1N1B4_1717 at 1965.184 kb on + strand, within Pf1N1B4_1717 at 1965.184 kb on + strand, within Pf1N1B4_1717 at 1965.185 kb on - strand, within Pf1N1B4_1717 at 1965.185 kb on - strand, within Pf1N1B4_1717 at 1965.185 kb on - strand, within Pf1N1B4_1717 at 1965.185 kb on - strand, within Pf1N1B4_1717 at 1965.185 kb on - strand, within Pf1N1B4_1717 at 1965.185 kb on - strand, within Pf1N1B4_1717 at 1965.185 kb on - strand, within Pf1N1B4_1717 at 1965.185 kb on - strand, within Pf1N1B4_1717 at 1965.185 kb on - strand, within Pf1N1B4_1717 at 1965.221 kb on + strand, within Pf1N1B4_1717 at 1965.221 kb on + strand, within Pf1N1B4_1717 at 1965.221 kb on + strand, within Pf1N1B4_1717 at 1965.222 kb on - strand, within Pf1N1B4_1717 at 1965.222 kb on - strand, within Pf1N1B4_1717 at 1965.222 kb on - strand, within Pf1N1B4_1717 at 1965.222 kb on - strand, within Pf1N1B4_1717 at 1965.222 kb on - strand, within Pf1N1B4_1717 at 1965.288 kb on - strand, within Pf1N1B4_1717 at 1965.288 kb on - strand, within Pf1N1B4_1717 at 1965.361 kb on + strand, within Pf1N1B4_1717 at 1965.361 kb on + strand, within Pf1N1B4_1717 at 1965.361 kb on + strand, within Pf1N1B4_1717 at 1965.361 kb on + strand, within Pf1N1B4_1717 at 1965.361 kb on + strand, within Pf1N1B4_1717 at 1965.362 kb on - strand, within Pf1N1B4_1717 at 1965.362 kb on - strand, within Pf1N1B4_1717 at 1965.362 kb on - strand, within Pf1N1B4_1717 at 1965.397 kb on + strand, within Pf1N1B4_1717 at 1965.499 kb on - strand, within Pf1N1B4_1717 at 1965.682 kb on + strand, within Pf1N1B4_1717 at 1965.683 kb on - strand, within Pf1N1B4_1717 at 1965.683 kb on - strand, within Pf1N1B4_1717 at 1965.683 kb on - strand at 1965.683 kb on - strand, within Pf1N1B4_1717 at 1965.683 kb on - strand, within Pf1N1B4_1717 at 1965.683 kb on - strand, within Pf1N1B4_1717 at 1965.683 kb on - strand, within Pf1N1B4_1717 at 1965.769 kb on + strand, within Pf1N1B4_1717 at 1965.769 kb on + strand, within Pf1N1B4_1717 at 1965.769 kb on + strand, within Pf1N1B4_1717 at 1965.770 kb on - strand, within Pf1N1B4_1717 at 1965.781 kb on + strand at 1965.781 kb on + strand, within Pf1N1B4_1717 at 1965.781 kb on + strand, within Pf1N1B4_1717 at 1965.781 kb on + strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.782 kb on - strand, within Pf1N1B4_1717 at 1965.911 kb on + strand at 1965.959 kb on + strand at 1965.959 kb on + strand at 1965.960 kb on - strand at 1965.986 kb on - strand at 1966.017 kb on + strand at 1966.017 kb on + strand at 1966.018 kb on - strand at 1966.018 kb on - strand at 1966.432 kb on + strand, within Pf1N1B4_1718 at 1966.435 kb on + strand, within Pf1N1B4_1718 at 1966.436 kb on - strand, within Pf1N1B4_1718 at 1966.436 kb on - strand, within Pf1N1B4_1718 at 1966.436 kb on - strand, within Pf1N1B4_1718 at 1966.436 kb on - strand, within Pf1N1B4_1718 at 1966.507 kb on + strand, within Pf1N1B4_1718 at 1966.507 kb on + strand, within Pf1N1B4_1718 at 1966.507 kb on + strand, within Pf1N1B4_1718 at 1966.508 kb on - strand, within Pf1N1B4_1718 at 1966.508 kb on - strand, within Pf1N1B4_1718 at 1966.508 kb on - strand, within Pf1N1B4_1718 at 1966.543 kb on + strand, within Pf1N1B4_1718 at 1966.561 kb on + strand, within Pf1N1B4_1718 at 1966.561 kb on + strand, within Pf1N1B4_1718 at 1966.562 kb on - strand, within Pf1N1B4_1718 at 1966.562 kb on - strand, within Pf1N1B4_1718 at 1966.624 kb on + strand, within Pf1N1B4_1718 at 1966.624 kb on + strand, within Pf1N1B4_1718 at 1966.624 kb on + strand, within Pf1N1B4_1718 at 1966.624 kb on + strand, within Pf1N1B4_1718 at 1966.624 kb on + strand, within Pf1N1B4_1718 at 1966.625 kb on - strand, within Pf1N1B4_1718 at 1966.625 kb on - strand, within Pf1N1B4_1718 at 1966.625 kb on - strand, within Pf1N1B4_1718 at 1966.625 kb on - strand, within Pf1N1B4_1718 at 1966.799 kb on + strand, within Pf1N1B4_1718 at 1966.979 kb on - strand at 1967.138 kb on - strand at 1967.138 kb on - strand at 1967.138 kb on - strand at 1967.152 kb on - strand at 1967.197 kb on + strand at 1967.197 kb on + strand at 1967.197 kb on + strand at 1967.198 kb on - strand at 1967.198 kb on - strand at 1967.198 kb on - strand at 1967.198 kb on - strand at 1967.198 kb on - strand at 1967.198 kb on - strand at 1967.198 kb on - strand at 1967.198 kb on - strand at 1967.292 kb on + strand, within Pf1N1B4_1719 at 1967.292 kb on + strand, within Pf1N1B4_1719 at 1967.292 kb on + strand, within Pf1N1B4_1719 at 1967.292 kb on + strand, within Pf1N1B4_1719 at 1967.292 kb on + strand, within Pf1N1B4_1719 at 1967.292 kb on + strand, within Pf1N1B4_1719 at 1967.292 kb on + strand, within Pf1N1B4_1719 at 1967.292 kb on + strand, within Pf1N1B4_1719 at 1967.292 kb on + strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.293 kb on - strand, within Pf1N1B4_1719 at 1967.466 kb on + strand, within Pf1N1B4_1719 at 1967.467 kb on - strand, within Pf1N1B4_1719 at 1967.467 kb on - strand, within Pf1N1B4_1719 at 1967.467 kb on - strand, within Pf1N1B4_1719 at 1967.467 kb on - strand, within Pf1N1B4_1719 at 1967.467 kb on - strand, within Pf1N1B4_1719 at 1967.490 kb on + strand, within Pf1N1B4_1719 at 1967.490 kb on + strand, within Pf1N1B4_1719 at 1967.490 kb on + strand, within Pf1N1B4_1719 at 1967.535 kb on + strand, within Pf1N1B4_1719 at 1967.535 kb on + strand, within Pf1N1B4_1719 at 1967.535 kb on + strand, within Pf1N1B4_1719 at 1967.535 kb on + strand, within Pf1N1B4_1719 at 1967.535 kb on + strand, within Pf1N1B4_1719 at 1967.536 kb on - strand, within Pf1N1B4_1719 at 1967.536 kb on - strand, within Pf1N1B4_1719 at 1967.536 kb on - strand, within Pf1N1B4_1719 at 1967.676 kb on + strand, within Pf1N1B4_1719 at 1967.676 kb on + strand, within Pf1N1B4_1719 at 1967.676 kb on + strand, within Pf1N1B4_1719 at 1967.677 kb on - strand, within Pf1N1B4_1719 at 1967.688 kb on + strand, within Pf1N1B4_1719 at 1967.688 kb on + strand, within Pf1N1B4_1719 at 1967.688 kb on + strand, within Pf1N1B4_1719 at 1967.688 kb on + strand, within Pf1N1B4_1719 at 1967.688 kb on + strand, within Pf1N1B4_1719 at 1967.689 kb on - strand, within Pf1N1B4_1719 at 1967.689 kb on - strand, within Pf1N1B4_1719 at 1967.689 kb on - strand, within Pf1N1B4_1719 at 1967.689 kb on - strand, within Pf1N1B4_1719 at 1967.689 kb on - strand, within Pf1N1B4_1719 at 1967.689 kb on - strand at 1967.742 kb on + strand, within Pf1N1B4_1719 at 1967.743 kb on - strand, within Pf1N1B4_1719 at 1967.853 kb on + strand, within Pf1N1B4_1719 at 1967.975 kb on + strand at 1968.003 kb on + strand at 1968.003 kb on + strand at 1968.003 kb on + strand at 1968.003 kb on + strand at 1968.003 kb on + strand at 1968.003 kb on + strand at 1968.003 kb on + strand at 1968.003 kb on + strand at 1968.003 kb on + strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand at 1968.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,965,181 + Pf1N1B4_1717 0.27 -1.3 1,965,182 - +0.8 1,965,182 - Pf1N1B4_1717 0.27 -0.3 1,965,182 - Pf1N1B4_1717 0.27 +0.6 1,965,182 - Pf1N1B4_1717 0.27 +0.2 1,965,184 + Pf1N1B4_1717 0.27 -0.8 1,965,184 + Pf1N1B4_1717 0.27 +0.1 1,965,184 + Pf1N1B4_1717 0.27 -0.3 1,965,184 + Pf1N1B4_1717 0.27 +0.1 1,965,184 + Pf1N1B4_1717 0.27 +0.8 1,965,185 - Pf1N1B4_1717 0.27 +0.4 1,965,185 - Pf1N1B4_1717 0.27 +0.4 1,965,185 - Pf1N1B4_1717 0.27 -0.3 1,965,185 - Pf1N1B4_1717 0.27 +0.4 1,965,185 - Pf1N1B4_1717 0.27 -0.5 1,965,185 - Pf1N1B4_1717 0.27 +0.8 1,965,185 - Pf1N1B4_1717 0.27 -0.8 1,965,185 - Pf1N1B4_1717 0.27 +0.4 1,965,185 - Pf1N1B4_1717 0.27 +0.2 1,965,221 + Pf1N1B4_1717 0.30 -0.6 1,965,221 + Pf1N1B4_1717 0.30 +1.8 1,965,221 + Pf1N1B4_1717 0.30 -0.6 1,965,222 - Pf1N1B4_1717 0.30 +1.4 1,965,222 - Pf1N1B4_1717 0.30 +0.4 1,965,222 - Pf1N1B4_1717 0.30 +0.6 1,965,222 - Pf1N1B4_1717 0.30 +0.5 1,965,222 - Pf1N1B4_1717 0.30 -0.2 1,965,288 - Pf1N1B4_1717 0.37 +0.2 1,965,288 - Pf1N1B4_1717 0.37 -0.6 1,965,361 + Pf1N1B4_1717 0.43 +1.1 1,965,361 + Pf1N1B4_1717 0.43 -1.2 1,965,361 + Pf1N1B4_1717 0.43 +0.8 1,965,361 + Pf1N1B4_1717 0.43 -1.3 1,965,361 + Pf1N1B4_1717 0.43 +0.2 1,965,362 - Pf1N1B4_1717 0.43 -0.3 1,965,362 - Pf1N1B4_1717 0.43 +1.0 1,965,362 - Pf1N1B4_1717 0.43 -1.5 1,965,397 + Pf1N1B4_1717 0.47 +0.5 1,965,499 - Pf1N1B4_1717 0.56 -1.6 1,965,682 + Pf1N1B4_1717 0.73 +1.5 1,965,683 - Pf1N1B4_1717 0.73 +0.5 1,965,683 - Pf1N1B4_1717 0.73 +0.4 1,965,683 - +0.8 1,965,683 - Pf1N1B4_1717 0.73 -0.2 1,965,683 - Pf1N1B4_1717 0.73 +0.0 1,965,683 - Pf1N1B4_1717 0.73 +2.4 1,965,683 - Pf1N1B4_1717 0.73 +0.8 1,965,769 + Pf1N1B4_1717 0.81 +0.0 1,965,769 + Pf1N1B4_1717 0.81 -0.5 1,965,769 + Pf1N1B4_1717 0.81 +0.6 1,965,770 - Pf1N1B4_1717 0.81 -0.4 1,965,781 + -0.2 1,965,781 + Pf1N1B4_1717 0.82 -0.8 1,965,781 + Pf1N1B4_1717 0.82 -0.4 1,965,781 + Pf1N1B4_1717 0.82 +0.2 1,965,782 - Pf1N1B4_1717 0.83 +0.4 1,965,782 - Pf1N1B4_1717 0.83 -1.4 1,965,782 - Pf1N1B4_1717 0.83 +0.8 1,965,782 - Pf1N1B4_1717 0.83 +0.7 1,965,782 - Pf1N1B4_1717 0.83 -0.8 1,965,782 - Pf1N1B4_1717 0.83 +0.2 1,965,782 - Pf1N1B4_1717 0.83 +0.4 1,965,782 - Pf1N1B4_1717 0.83 -0.3 1,965,782 - Pf1N1B4_1717 0.83 -0.3 1,965,782 - Pf1N1B4_1717 0.83 +0.8 1,965,911 + +0.7 1,965,959 + -1.3 1,965,959 + +0.8 1,965,960 - -0.9 1,965,986 - +0.5 1,966,017 + +0.2 1,966,017 + +0.2 1,966,018 - -0.4 1,966,018 - -1.5 1,966,432 + Pf1N1B4_1718 0.36 +1.4 1,966,435 + Pf1N1B4_1718 0.36 +0.8 1,966,436 - Pf1N1B4_1718 0.37 +0.7 1,966,436 - Pf1N1B4_1718 0.37 +1.1 1,966,436 - Pf1N1B4_1718 0.37 +0.5 1,966,436 - Pf1N1B4_1718 0.37 -1.2 1,966,507 + Pf1N1B4_1718 0.44 -0.3 1,966,507 + Pf1N1B4_1718 0.44 +1.1 1,966,507 + Pf1N1B4_1718 0.44 +1.0 1,966,508 - Pf1N1B4_1718 0.44 +0.4 1,966,508 - Pf1N1B4_1718 0.44 +1.4 1,966,508 - Pf1N1B4_1718 0.44 +2.0 1,966,543 + Pf1N1B4_1718 0.47 +1.1 1,966,561 + Pf1N1B4_1718 0.49 +1.8 1,966,561 + Pf1N1B4_1718 0.49 +0.6 1,966,562 - Pf1N1B4_1718 0.49 -1.9 1,966,562 - Pf1N1B4_1718 0.49 -0.8 1,966,624 + Pf1N1B4_1718 0.55 -1.6 1,966,624 + Pf1N1B4_1718 0.55 +0.1 1,966,624 + Pf1N1B4_1718 0.55 +0.8 1,966,624 + Pf1N1B4_1718 0.55 +0.5 1,966,624 + Pf1N1B4_1718 0.55 -0.5 1,966,625 - Pf1N1B4_1718 0.55 +0.1 1,966,625 - Pf1N1B4_1718 0.55 +1.2 1,966,625 - Pf1N1B4_1718 0.55 +0.8 1,966,625 - Pf1N1B4_1718 0.55 -0.5 1,966,799 + Pf1N1B4_1718 0.73 -0.2 1,966,979 - -0.2 1,967,138 - +0.8 1,967,138 - -1.4 1,967,138 - -1.3 1,967,152 - +0.3 1,967,197 + +0.5 1,967,197 + +0.4 1,967,197 + +0.6 1,967,198 - +1.3 1,967,198 - +0.0 1,967,198 - -1.2 1,967,198 - -0.5 1,967,198 - -2.1 1,967,198 - +1.7 1,967,198 - -0.2 1,967,198 - +1.4 1,967,292 + Pf1N1B4_1719 0.12 -0.8 1,967,292 + Pf1N1B4_1719 0.12 +0.1 1,967,292 + Pf1N1B4_1719 0.12 -1.1 1,967,292 + Pf1N1B4_1719 0.12 +0.1 1,967,292 + Pf1N1B4_1719 0.12 +0.0 1,967,292 + Pf1N1B4_1719 0.12 -1.2 1,967,292 + Pf1N1B4_1719 0.12 -0.5 1,967,292 + Pf1N1B4_1719 0.12 +0.1 1,967,292 + Pf1N1B4_1719 0.12 +1.0 1,967,293 - Pf1N1B4_1719 0.12 -0.0 1,967,293 - Pf1N1B4_1719 0.12 +0.6 1,967,293 - Pf1N1B4_1719 0.12 +0.8 1,967,293 - Pf1N1B4_1719 0.12 +1.1 1,967,293 - Pf1N1B4_1719 0.12 -0.2 1,967,293 - Pf1N1B4_1719 0.12 -0.6 1,967,293 - Pf1N1B4_1719 0.12 -1.2 1,967,293 - Pf1N1B4_1719 0.12 +0.1 1,967,293 - Pf1N1B4_1719 0.12 -0.0 1,967,293 - Pf1N1B4_1719 0.12 -0.5 1,967,293 - Pf1N1B4_1719 0.12 +0.2 1,967,293 - Pf1N1B4_1719 0.12 +0.2 1,967,466 + Pf1N1B4_1719 0.35 -1.6 1,967,467 - Pf1N1B4_1719 0.35 +0.8 1,967,467 - Pf1N1B4_1719 0.35 +0.8 1,967,467 - Pf1N1B4_1719 0.35 -1.1 1,967,467 - Pf1N1B4_1719 0.35 +0.2 1,967,467 - Pf1N1B4_1719 0.35 -0.2 1,967,490 + Pf1N1B4_1719 0.38 +1.2 1,967,490 + Pf1N1B4_1719 0.38 -1.2 1,967,490 + Pf1N1B4_1719 0.38 +0.4 1,967,535 + Pf1N1B4_1719 0.44 +0.8 1,967,535 + Pf1N1B4_1719 0.44 +0.7 1,967,535 + Pf1N1B4_1719 0.44 +0.0 1,967,535 + Pf1N1B4_1719 0.44 -0.7 1,967,535 + Pf1N1B4_1719 0.44 -0.8 1,967,536 - Pf1N1B4_1719 0.44 -0.6 1,967,536 - Pf1N1B4_1719 0.44 +0.9 1,967,536 - Pf1N1B4_1719 0.44 -0.3 1,967,676 + Pf1N1B4_1719 0.63 -0.5 1,967,676 + Pf1N1B4_1719 0.63 +0.0 1,967,676 + Pf1N1B4_1719 0.63 -0.8 1,967,677 - Pf1N1B4_1719 0.63 +0.4 1,967,688 + Pf1N1B4_1719 0.64 +1.5 1,967,688 + Pf1N1B4_1719 0.64 -0.5 1,967,688 + Pf1N1B4_1719 0.64 +0.2 1,967,688 + Pf1N1B4_1719 0.64 +0.2 1,967,688 + Pf1N1B4_1719 0.64 -1.2 1,967,689 - Pf1N1B4_1719 0.64 -0.8 1,967,689 - Pf1N1B4_1719 0.64 -0.2 1,967,689 - Pf1N1B4_1719 0.64 -1.0 1,967,689 - Pf1N1B4_1719 0.64 +0.6 1,967,689 - Pf1N1B4_1719 0.64 +0.4 1,967,689 - -1.0 1,967,742 + Pf1N1B4_1719 0.71 -0.9 1,967,743 - Pf1N1B4_1719 0.71 +1.6 1,967,853 + Pf1N1B4_1719 0.86 +1.2 1,967,975 + -0.5 1,968,003 + +1.8 1,968,003 + +1.8 1,968,003 + +0.0 1,968,003 + +2.8 1,968,003 + +0.1 1,968,003 + -0.6 1,968,003 + +1.5 1,968,003 + -0.1 1,968,003 + +0.2 1,968,004 - -0.5 1,968,004 - +1.4 1,968,004 - -0.2 1,968,004 - -0.6 1,968,004 - +2.4 1,968,004 - +1.1 1,968,004 - +0.6 1,968,004 - +0.6 1,968,004 - -0.6 1,968,004 - -0.5 1,968,004 - -0.3 1,968,004 - -0.5 1,968,004 - +0.7
Or see this region's nucleotide sequence