Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1718

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1717 and Pf1N1B4_1718 are separated by 100 nucleotidesPf1N1B4_1718 and Pf1N1B4_1719 are separated by 127 nucleotides Pf1N1B4_1717 - Fatty acid desaturase, at 1,964,895 to 1,965,968 _1717 Pf1N1B4_1718 - Transcriptional regulator, AraC family, at 1,966,069 to 1,967,073 _1718 Pf1N1B4_1719 - Protein hipA, at 1,967,201 to 1,967,959 _1719 Position (kb) 1966 1967 1968Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1965.181 kb on + strand, within Pf1N1B4_1717at 1965.182 kb on - strandat 1965.182 kb on - strand, within Pf1N1B4_1717at 1965.182 kb on - strand, within Pf1N1B4_1717at 1965.182 kb on - strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.221 kb on + strand, within Pf1N1B4_1717at 1965.221 kb on + strand, within Pf1N1B4_1717at 1965.221 kb on + strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.288 kb on - strand, within Pf1N1B4_1717at 1965.288 kb on - strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.362 kb on - strand, within Pf1N1B4_1717at 1965.362 kb on - strand, within Pf1N1B4_1717at 1965.362 kb on - strand, within Pf1N1B4_1717at 1965.397 kb on + strand, within Pf1N1B4_1717at 1965.499 kb on - strand, within Pf1N1B4_1717at 1965.682 kb on + strand, within Pf1N1B4_1717at 1965.683 kb on - strand, within Pf1N1B4_1717at 1965.683 kb on - strand, within Pf1N1B4_1717at 1965.683 kb on - strandat 1965.683 kb on - strand, within Pf1N1B4_1717at 1965.683 kb on - strand, within Pf1N1B4_1717at 1965.683 kb on - strand, within Pf1N1B4_1717at 1965.683 kb on - strand, within Pf1N1B4_1717at 1965.769 kb on + strand, within Pf1N1B4_1717at 1965.769 kb on + strand, within Pf1N1B4_1717at 1965.769 kb on + strand, within Pf1N1B4_1717at 1965.770 kb on - strand, within Pf1N1B4_1717at 1965.781 kb on + strandat 1965.781 kb on + strand, within Pf1N1B4_1717at 1965.781 kb on + strand, within Pf1N1B4_1717at 1965.781 kb on + strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.782 kb on - strand, within Pf1N1B4_1717at 1965.911 kb on + strandat 1965.959 kb on + strandat 1965.959 kb on + strandat 1965.960 kb on - strandat 1965.986 kb on - strandat 1966.017 kb on + strandat 1966.017 kb on + strandat 1966.018 kb on - strandat 1966.018 kb on - strandat 1966.432 kb on + strand, within Pf1N1B4_1718at 1966.435 kb on + strand, within Pf1N1B4_1718at 1966.436 kb on - strand, within Pf1N1B4_1718at 1966.436 kb on - strand, within Pf1N1B4_1718at 1966.436 kb on - strand, within Pf1N1B4_1718at 1966.436 kb on - strand, within Pf1N1B4_1718at 1966.507 kb on + strand, within Pf1N1B4_1718at 1966.507 kb on + strand, within Pf1N1B4_1718at 1966.507 kb on + strand, within Pf1N1B4_1718at 1966.508 kb on - strand, within Pf1N1B4_1718at 1966.508 kb on - strand, within Pf1N1B4_1718at 1966.508 kb on - strand, within Pf1N1B4_1718at 1966.543 kb on + strand, within Pf1N1B4_1718at 1966.561 kb on + strand, within Pf1N1B4_1718at 1966.561 kb on + strand, within Pf1N1B4_1718at 1966.562 kb on - strand, within Pf1N1B4_1718at 1966.562 kb on - strand, within Pf1N1B4_1718at 1966.624 kb on + strand, within Pf1N1B4_1718at 1966.624 kb on + strand, within Pf1N1B4_1718at 1966.624 kb on + strand, within Pf1N1B4_1718at 1966.624 kb on + strand, within Pf1N1B4_1718at 1966.624 kb on + strand, within Pf1N1B4_1718at 1966.625 kb on - strand, within Pf1N1B4_1718at 1966.625 kb on - strand, within Pf1N1B4_1718at 1966.625 kb on - strand, within Pf1N1B4_1718at 1966.625 kb on - strand, within Pf1N1B4_1718at 1966.799 kb on + strand, within Pf1N1B4_1718at 1966.979 kb on - strandat 1967.138 kb on - strandat 1967.138 kb on - strandat 1967.138 kb on - strandat 1967.152 kb on - strandat 1967.197 kb on + strandat 1967.197 kb on + strandat 1967.197 kb on + strandat 1967.198 kb on - strandat 1967.198 kb on - strandat 1967.198 kb on - strandat 1967.198 kb on - strandat 1967.198 kb on - strandat 1967.198 kb on - strandat 1967.198 kb on - strandat 1967.198 kb on - strandat 1967.292 kb on + strand, within Pf1N1B4_1719at 1967.292 kb on + strand, within Pf1N1B4_1719at 1967.292 kb on + strand, within Pf1N1B4_1719at 1967.292 kb on + strand, within Pf1N1B4_1719at 1967.292 kb on + strand, within Pf1N1B4_1719at 1967.292 kb on + strand, within Pf1N1B4_1719at 1967.292 kb on + strand, within Pf1N1B4_1719at 1967.292 kb on + strand, within Pf1N1B4_1719at 1967.292 kb on + strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.293 kb on - strand, within Pf1N1B4_1719at 1967.466 kb on + strand, within Pf1N1B4_1719at 1967.467 kb on - strand, within Pf1N1B4_1719at 1967.467 kb on - strand, within Pf1N1B4_1719at 1967.467 kb on - strand, within Pf1N1B4_1719at 1967.467 kb on - strand, within Pf1N1B4_1719at 1967.467 kb on - strand, within Pf1N1B4_1719at 1967.490 kb on + strand, within Pf1N1B4_1719at 1967.490 kb on + strand, within Pf1N1B4_1719at 1967.490 kb on + strand, within Pf1N1B4_1719at 1967.535 kb on + strand, within Pf1N1B4_1719at 1967.535 kb on + strand, within Pf1N1B4_1719at 1967.535 kb on + strand, within Pf1N1B4_1719at 1967.535 kb on + strand, within Pf1N1B4_1719at 1967.535 kb on + strand, within Pf1N1B4_1719at 1967.536 kb on - strand, within Pf1N1B4_1719at 1967.536 kb on - strand, within Pf1N1B4_1719at 1967.536 kb on - strand, within Pf1N1B4_1719at 1967.676 kb on + strand, within Pf1N1B4_1719at 1967.676 kb on + strand, within Pf1N1B4_1719at 1967.676 kb on + strand, within Pf1N1B4_1719at 1967.677 kb on - strand, within Pf1N1B4_1719at 1967.688 kb on + strand, within Pf1N1B4_1719at 1967.688 kb on + strand, within Pf1N1B4_1719at 1967.688 kb on + strand, within Pf1N1B4_1719at 1967.688 kb on + strand, within Pf1N1B4_1719at 1967.688 kb on + strand, within Pf1N1B4_1719at 1967.689 kb on - strand, within Pf1N1B4_1719at 1967.689 kb on - strand, within Pf1N1B4_1719at 1967.689 kb on - strand, within Pf1N1B4_1719at 1967.689 kb on - strand, within Pf1N1B4_1719at 1967.689 kb on - strand, within Pf1N1B4_1719at 1967.689 kb on - strandat 1967.742 kb on + strand, within Pf1N1B4_1719at 1967.743 kb on - strand, within Pf1N1B4_1719at 1967.853 kb on + strand, within Pf1N1B4_1719at 1967.975 kb on + strandat 1968.003 kb on + strandat 1968.003 kb on + strandat 1968.003 kb on + strandat 1968.003 kb on + strandat 1968.003 kb on + strandat 1968.003 kb on + strandat 1968.003 kb on + strandat 1968.003 kb on + strandat 1968.003 kb on + strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strandat 1968.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,965,181 + Pf1N1B4_1717 0.27 -1.3
1,965,182 - +0.8
1,965,182 - Pf1N1B4_1717 0.27 -0.3
1,965,182 - Pf1N1B4_1717 0.27 +0.6
1,965,182 - Pf1N1B4_1717 0.27 +0.2
1,965,184 + Pf1N1B4_1717 0.27 -0.8
1,965,184 + Pf1N1B4_1717 0.27 +0.1
1,965,184 + Pf1N1B4_1717 0.27 -0.3
1,965,184 + Pf1N1B4_1717 0.27 +0.1
1,965,184 + Pf1N1B4_1717 0.27 +0.8
1,965,185 - Pf1N1B4_1717 0.27 +0.4
1,965,185 - Pf1N1B4_1717 0.27 +0.4
1,965,185 - Pf1N1B4_1717 0.27 -0.3
1,965,185 - Pf1N1B4_1717 0.27 +0.4
1,965,185 - Pf1N1B4_1717 0.27 -0.5
1,965,185 - Pf1N1B4_1717 0.27 +0.8
1,965,185 - Pf1N1B4_1717 0.27 -0.8
1,965,185 - Pf1N1B4_1717 0.27 +0.4
1,965,185 - Pf1N1B4_1717 0.27 +0.2
1,965,221 + Pf1N1B4_1717 0.30 -0.6
1,965,221 + Pf1N1B4_1717 0.30 +1.8
1,965,221 + Pf1N1B4_1717 0.30 -0.6
1,965,222 - Pf1N1B4_1717 0.30 +1.4
1,965,222 - Pf1N1B4_1717 0.30 +0.4
1,965,222 - Pf1N1B4_1717 0.30 +0.6
1,965,222 - Pf1N1B4_1717 0.30 +0.5
1,965,222 - Pf1N1B4_1717 0.30 -0.2
1,965,288 - Pf1N1B4_1717 0.37 +0.2
1,965,288 - Pf1N1B4_1717 0.37 -0.6
1,965,361 + Pf1N1B4_1717 0.43 +1.1
1,965,361 + Pf1N1B4_1717 0.43 -1.2
1,965,361 + Pf1N1B4_1717 0.43 +0.8
1,965,361 + Pf1N1B4_1717 0.43 -1.3
1,965,361 + Pf1N1B4_1717 0.43 +0.2
1,965,362 - Pf1N1B4_1717 0.43 -0.3
1,965,362 - Pf1N1B4_1717 0.43 +1.0
1,965,362 - Pf1N1B4_1717 0.43 -1.5
1,965,397 + Pf1N1B4_1717 0.47 +0.5
1,965,499 - Pf1N1B4_1717 0.56 -1.6
1,965,682 + Pf1N1B4_1717 0.73 +1.5
1,965,683 - Pf1N1B4_1717 0.73 +0.5
1,965,683 - Pf1N1B4_1717 0.73 +0.4
1,965,683 - +0.8
1,965,683 - Pf1N1B4_1717 0.73 -0.2
1,965,683 - Pf1N1B4_1717 0.73 +0.0
1,965,683 - Pf1N1B4_1717 0.73 +2.4
1,965,683 - Pf1N1B4_1717 0.73 +0.8
1,965,769 + Pf1N1B4_1717 0.81 +0.0
1,965,769 + Pf1N1B4_1717 0.81 -0.5
1,965,769 + Pf1N1B4_1717 0.81 +0.6
1,965,770 - Pf1N1B4_1717 0.81 -0.4
1,965,781 + -0.2
1,965,781 + Pf1N1B4_1717 0.82 -0.8
1,965,781 + Pf1N1B4_1717 0.82 -0.4
1,965,781 + Pf1N1B4_1717 0.82 +0.2
1,965,782 - Pf1N1B4_1717 0.83 +0.4
1,965,782 - Pf1N1B4_1717 0.83 -1.4
1,965,782 - Pf1N1B4_1717 0.83 +0.8
1,965,782 - Pf1N1B4_1717 0.83 +0.7
1,965,782 - Pf1N1B4_1717 0.83 -0.8
1,965,782 - Pf1N1B4_1717 0.83 +0.2
1,965,782 - Pf1N1B4_1717 0.83 +0.4
1,965,782 - Pf1N1B4_1717 0.83 -0.3
1,965,782 - Pf1N1B4_1717 0.83 -0.3
1,965,782 - Pf1N1B4_1717 0.83 +0.8
1,965,911 + +0.7
1,965,959 + -1.3
1,965,959 + +0.8
1,965,960 - -0.9
1,965,986 - +0.5
1,966,017 + +0.2
1,966,017 + +0.2
1,966,018 - -0.4
1,966,018 - -1.5
1,966,432 + Pf1N1B4_1718 0.36 +1.4
1,966,435 + Pf1N1B4_1718 0.36 +0.8
1,966,436 - Pf1N1B4_1718 0.37 +0.7
1,966,436 - Pf1N1B4_1718 0.37 +1.1
1,966,436 - Pf1N1B4_1718 0.37 +0.5
1,966,436 - Pf1N1B4_1718 0.37 -1.2
1,966,507 + Pf1N1B4_1718 0.44 -0.3
1,966,507 + Pf1N1B4_1718 0.44 +1.1
1,966,507 + Pf1N1B4_1718 0.44 +1.0
1,966,508 - Pf1N1B4_1718 0.44 +0.4
1,966,508 - Pf1N1B4_1718 0.44 +1.4
1,966,508 - Pf1N1B4_1718 0.44 +2.0
1,966,543 + Pf1N1B4_1718 0.47 +1.1
1,966,561 + Pf1N1B4_1718 0.49 +1.8
1,966,561 + Pf1N1B4_1718 0.49 +0.6
1,966,562 - Pf1N1B4_1718 0.49 -1.9
1,966,562 - Pf1N1B4_1718 0.49 -0.8
1,966,624 + Pf1N1B4_1718 0.55 -1.6
1,966,624 + Pf1N1B4_1718 0.55 +0.1
1,966,624 + Pf1N1B4_1718 0.55 +0.8
1,966,624 + Pf1N1B4_1718 0.55 +0.5
1,966,624 + Pf1N1B4_1718 0.55 -0.5
1,966,625 - Pf1N1B4_1718 0.55 +0.1
1,966,625 - Pf1N1B4_1718 0.55 +1.2
1,966,625 - Pf1N1B4_1718 0.55 +0.8
1,966,625 - Pf1N1B4_1718 0.55 -0.5
1,966,799 + Pf1N1B4_1718 0.73 -0.2
1,966,979 - -0.2
1,967,138 - +0.8
1,967,138 - -1.4
1,967,138 - -1.3
1,967,152 - +0.3
1,967,197 + +0.5
1,967,197 + +0.4
1,967,197 + +0.6
1,967,198 - +1.3
1,967,198 - +0.0
1,967,198 - -1.2
1,967,198 - -0.5
1,967,198 - -2.1
1,967,198 - +1.7
1,967,198 - -0.2
1,967,198 - +1.4
1,967,292 + Pf1N1B4_1719 0.12 -0.8
1,967,292 + Pf1N1B4_1719 0.12 +0.1
1,967,292 + Pf1N1B4_1719 0.12 -1.1
1,967,292 + Pf1N1B4_1719 0.12 +0.1
1,967,292 + Pf1N1B4_1719 0.12 +0.0
1,967,292 + Pf1N1B4_1719 0.12 -1.2
1,967,292 + Pf1N1B4_1719 0.12 -0.5
1,967,292 + Pf1N1B4_1719 0.12 +0.1
1,967,292 + Pf1N1B4_1719 0.12 +1.0
1,967,293 - Pf1N1B4_1719 0.12 -0.0
1,967,293 - Pf1N1B4_1719 0.12 +0.6
1,967,293 - Pf1N1B4_1719 0.12 +0.8
1,967,293 - Pf1N1B4_1719 0.12 +1.1
1,967,293 - Pf1N1B4_1719 0.12 -0.2
1,967,293 - Pf1N1B4_1719 0.12 -0.6
1,967,293 - Pf1N1B4_1719 0.12 -1.2
1,967,293 - Pf1N1B4_1719 0.12 +0.1
1,967,293 - Pf1N1B4_1719 0.12 -0.0
1,967,293 - Pf1N1B4_1719 0.12 -0.5
1,967,293 - Pf1N1B4_1719 0.12 +0.2
1,967,293 - Pf1N1B4_1719 0.12 +0.2
1,967,466 + Pf1N1B4_1719 0.35 -1.6
1,967,467 - Pf1N1B4_1719 0.35 +0.8
1,967,467 - Pf1N1B4_1719 0.35 +0.8
1,967,467 - Pf1N1B4_1719 0.35 -1.1
1,967,467 - Pf1N1B4_1719 0.35 +0.2
1,967,467 - Pf1N1B4_1719 0.35 -0.2
1,967,490 + Pf1N1B4_1719 0.38 +1.2
1,967,490 + Pf1N1B4_1719 0.38 -1.2
1,967,490 + Pf1N1B4_1719 0.38 +0.4
1,967,535 + Pf1N1B4_1719 0.44 +0.8
1,967,535 + Pf1N1B4_1719 0.44 +0.7
1,967,535 + Pf1N1B4_1719 0.44 +0.0
1,967,535 + Pf1N1B4_1719 0.44 -0.7
1,967,535 + Pf1N1B4_1719 0.44 -0.8
1,967,536 - Pf1N1B4_1719 0.44 -0.6
1,967,536 - Pf1N1B4_1719 0.44 +0.9
1,967,536 - Pf1N1B4_1719 0.44 -0.3
1,967,676 + Pf1N1B4_1719 0.63 -0.5
1,967,676 + Pf1N1B4_1719 0.63 +0.0
1,967,676 + Pf1N1B4_1719 0.63 -0.8
1,967,677 - Pf1N1B4_1719 0.63 +0.4
1,967,688 + Pf1N1B4_1719 0.64 +1.5
1,967,688 + Pf1N1B4_1719 0.64 -0.5
1,967,688 + Pf1N1B4_1719 0.64 +0.2
1,967,688 + Pf1N1B4_1719 0.64 +0.2
1,967,688 + Pf1N1B4_1719 0.64 -1.2
1,967,689 - Pf1N1B4_1719 0.64 -0.8
1,967,689 - Pf1N1B4_1719 0.64 -0.2
1,967,689 - Pf1N1B4_1719 0.64 -1.0
1,967,689 - Pf1N1B4_1719 0.64 +0.6
1,967,689 - Pf1N1B4_1719 0.64 +0.4
1,967,689 - -1.0
1,967,742 + Pf1N1B4_1719 0.71 -0.9
1,967,743 - Pf1N1B4_1719 0.71 +1.6
1,967,853 + Pf1N1B4_1719 0.86 +1.2
1,967,975 + -0.5
1,968,003 + +1.8
1,968,003 + +1.8
1,968,003 + +0.0
1,968,003 + +2.8
1,968,003 + +0.1
1,968,003 + -0.6
1,968,003 + +1.5
1,968,003 + -0.1
1,968,003 + +0.2
1,968,004 - -0.5
1,968,004 - +1.4
1,968,004 - -0.2
1,968,004 - -0.6
1,968,004 - +2.4
1,968,004 - +1.1
1,968,004 - +0.6
1,968,004 - +0.6
1,968,004 - -0.6
1,968,004 - -0.5
1,968,004 - -0.3
1,968,004 - -0.5
1,968,004 - +0.7

Or see this region's nucleotide sequence