Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15835

Experiment: R2A with Manganese (II) chloride tetrahydrate 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 0.3125 mM
3,485,494	+		LRK54_RS15830	0.57	+0.5
3,485,494	+		LRK54_RS15830	0.57	-1.0
3,485,494	+		LRK54_RS15830	0.57	+0.0
3,485,494	+		LRK54_RS15830	0.57	-0.8
3,485,494	+		LRK54_RS15830	0.57	+1.1
3,485,494	+		LRK54_RS15830	0.57	-0.7
3,485,494	+		LRK54_RS15830	0.57	-0.0
3,485,495	-		LRK54_RS15830	0.57	+0.1
3,485,495	-		LRK54_RS15830	0.57	+0.5
3,485,495	-		LRK54_RS15830	0.57	+0.6
3,485,495	-		LRK54_RS15830	0.57	+0.9
3,485,551	+		LRK54_RS15830	0.61	+0.2
3,485,551	+		LRK54_RS15830	0.61	+1.4
3,485,551	+		LRK54_RS15830	0.61	+0.4
3,485,551	+		LRK54_RS15830	0.61	+0.3
3,485,551	+		LRK54_RS15830	0.61	+0.1
3,485,551	+		LRK54_RS15830	0.61	-0.1
3,485,552	-		LRK54_RS15830	0.61	-0.9
3,485,552	-		LRK54_RS15830	0.61	-0.4
3,485,552	-		LRK54_RS15830	0.61	-0.4
3,485,552	-		LRK54_RS15830	0.61	+0.3
3,485,552	-		LRK54_RS15830	0.61	+0.3
3,485,552	-		LRK54_RS15830	0.61	-0.0
3,485,552	-		LRK54_RS15830	0.61	-0.2
3,485,552	-		LRK54_RS15830	0.61	+0.8
3,485,695	+		LRK54_RS15830	0.69	+0.2
3,485,695	+		LRK54_RS15830	0.69	+0.1
3,485,695	+		LRK54_RS15830	0.69	-0.5
3,485,695	+		LRK54_RS15830	0.69	-0.3
3,485,695	+		LRK54_RS15830	0.69	+0.1
3,485,695	+		LRK54_RS15830	0.69	+0.1
3,485,695	+		LRK54_RS15830	0.69	-0.1
3,485,695	+		LRK54_RS15830	0.69	+0.1
3,485,695	+		LRK54_RS15830	0.69	+0.4
3,485,695	+		LRK54_RS15830	0.69	+0.4
3,485,696	-		LRK54_RS15830	0.69	-0.5
3,485,696	-		LRK54_RS15830	0.69	-0.7
3,485,696	-		LRK54_RS15830	0.69	-0.7
3,485,696	-		LRK54_RS15830	0.69	+1.1
3,485,696	-		LRK54_RS15830	0.69	+1.1
3,485,696	-		LRK54_RS15830	0.69	-0.9
3,485,698	+		LRK54_RS15830	0.69	-0.6
3,485,698	+		LRK54_RS15830	0.69	-1.9
3,485,698	+		LRK54_RS15830	0.69	-1.7
3,485,698	+		LRK54_RS15830	0.69	+1.3
3,485,699	-		LRK54_RS15830	0.69	-0.3
3,485,699	-		LRK54_RS15830	0.69	+0.7
3,485,699	-		LRK54_RS15830	0.69	-1.0
3,485,699	-		LRK54_RS15830	0.69	+0.2
3,485,699	-		LRK54_RS15830	0.69	+0.5
3,485,893	+		LRK54_RS15830	0.81	-0.6
3,485,893	+		LRK54_RS15830	0.81	-0.2
3,485,893	+		LRK54_RS15830	0.81	+0.0
3,485,893	+		LRK54_RS15830	0.81	+1.2
3,485,893	+		LRK54_RS15830	0.81	-0.5
3,485,893	+		LRK54_RS15830	0.81	+0.6
3,485,893	+		LRK54_RS15830	0.81	-1.0
3,485,893	+		LRK54_RS15830	0.81	+0.7
3,485,893	+		LRK54_RS15830	0.81	-0.1
3,485,893	+		LRK54_RS15830	0.81	+0.2
3,485,894	-		LRK54_RS15830	0.81	-0.3
3,485,894	-		LRK54_RS15830	0.81	-0.9
3,485,894	-		LRK54_RS15830	0.81	+0.0
3,485,894	-		LRK54_RS15830	0.81	+0.3
3,485,894	-		LRK54_RS15830	0.81	-1.0
3,485,894	-		LRK54_RS15830	0.81	-1.7
3,485,894	-		LRK54_RS15830	0.81	+0.3
3,486,010	+		LRK54_RS15830	0.88	-1.2
3,486,010	+		LRK54_RS15830	0.88	-0.4
3,486,010	+		LRK54_RS15830	0.88	+0.7
3,486,010	+		LRK54_RS15830	0.88	-0.9
3,486,010	+		LRK54_RS15830	0.88	-0.8
3,486,010	+		LRK54_RS15830	0.88	-0.2
3,486,010	+		LRK54_RS15830	0.88	-0.2
3,486,011	-		LRK54_RS15830	0.88	-0.4
3,486,011	-		LRK54_RS15830	0.88	-0.7
3,486,011	-		LRK54_RS15830	0.88	+0.7
3,486,011	-		LRK54_RS15830	0.88	-1.1
3,486,011	-		LRK54_RS15830	0.88	-0.6
3,486,011	-		LRK54_RS15830	0.88	-0.2
3,486,011	-		LRK54_RS15830	0.88	+0.3
3,486,011	-		LRK54_RS15830	0.88	-0.0
3,486,012	+		LRK54_RS15830	0.88	+0.0
3,486,012	+		LRK54_RS15830	0.88	-0.0
3,486,012	+		LRK54_RS15830	0.88	+0.1
3,486,012	+		LRK54_RS15830	0.88	-0.7
3,486,012	+		LRK54_RS15830	0.88	-0.5
3,486,013	-		LRK54_RS15830	0.88	-1.1
3,486,013	-		LRK54_RS15830	0.88	+0.5
3,486,013	-		LRK54_RS15830	0.88	-0.5
3,486,013	-		LRK54_RS15830	0.88	-0.5
3,486,013	-		LRK54_RS15830	0.88	-0.1
3,486,013	-		LRK54_RS15830	0.88	-0.2
3,486,013	-		LRK54_RS15830	0.88	+0.6
3,486,013	-		LRK54_RS15830	0.88	+1.5
3,486,013	-		LRK54_RS15830	0.88	+0.0
3,486,097	+				-0.7
3,486,097	+				+0.0
3,486,097	+				-0.6
3,486,097	+				-0.0
3,486,098	-				-0.1
3,486,098	-				-1.7
3,486,098	-				+0.5
3,486,098	-				-0.0
3,486,098	-				-0.7
3,486,112	+				-0.9
3,486,112	+				-0.8
3,486,112	+				-0.4
3,486,112	+				-0.8
3,486,112	+				-0.4
3,486,112	+				+0.6
3,486,112	+				-0.3
3,486,112	+				-0.0
3,486,112	+				-0.2
3,486,112	+				+0.3
3,486,112	+				-0.1
3,486,112	+				-0.4
3,486,112	+				+0.3
3,486,112	+				+1.2
3,486,112	+				-0.0
3,486,112	+				-0.7
3,486,113	-				+0.7
3,486,113	-				-0.1
3,486,113	-				-0.4
3,486,113	-				+0.3
3,486,113	-				-0.2
3,486,113	-				+0.3
3,486,113	-				+1.9
3,486,113	-				+0.1
3,486,145	+				-0.2
3,486,145	+				-0.7
3,486,145	+				-1.2
3,486,145	+				-0.8
3,486,146	-				-0.3
3,486,146	-				-0.7
3,486,146	-				-0.6
3,486,146	-				+0.8
3,486,146	-				-0.8
3,486,146	-				-0.4
3,486,146	-				+0.0
3,486,146	-				+0.1
3,486,299	+				-0.2
3,486,299	+				+0.2
3,486,687	+		LRK54_RS15835	0.16	-0.9
3,486,688	-		LRK54_RS15835	0.17	-0.4
3,486,710	+		LRK54_RS15835	0.17	-0.1
3,486,710	+		LRK54_RS15835	0.17	-1.1
3,486,710	+		LRK54_RS15835	0.17	-0.1
3,486,710	+		LRK54_RS15835	0.17	+0.7
3,486,710	+		LRK54_RS15835	0.17	-0.1
3,486,711	-		LRK54_RS15835	0.17	-0.4
3,486,711	-		LRK54_RS15835	0.17	+0.4
3,486,711	-		LRK54_RS15835	0.17	+1.1
3,486,711	-		LRK54_RS15835	0.17	+0.8
3,486,711	-		LRK54_RS15835	0.17	-0.0
3,486,711	-		LRK54_RS15835	0.17	+0.2
3,486,711	-		LRK54_RS15835	0.17	+0.8
3,486,711	-		LRK54_RS15835	0.17	-0.4
3,487,088	+		LRK54_RS15835	0.31	+0.3
3,487,088	+		LRK54_RS15835	0.31	-0.2
3,487,088	+		LRK54_RS15835	0.31	-0.1
3,487,088	+		LRK54_RS15835	0.31	+0.3
3,487,088	+		LRK54_RS15835	0.31	-0.2
3,487,088	+		LRK54_RS15835	0.31	+0.3
3,487,089	-		LRK54_RS15835	0.31	+0.8
3,487,089	-		LRK54_RS15835	0.31	+0.4
3,487,089	-		LRK54_RS15835	0.31	-2.0
3,487,089	-		LRK54_RS15835	0.31	-0.0
3,487,136	+		LRK54_RS15835	0.33	-0.8
3,487,136	+		LRK54_RS15835	0.33	-0.4
3,487,136	+		LRK54_RS15835	0.33	+1.2
3,487,136	+		LRK54_RS15835	0.33	-0.8
3,487,136	+		LRK54_RS15835	0.33	+0.5
3,487,136	+		LRK54_RS15835	0.33	-0.2
3,487,136	+		LRK54_RS15835	0.33	-0.3
3,487,136	+		LRK54_RS15835	0.33	-0.0
3,487,136	+		LRK54_RS15835	0.33	-0.5
3,487,137	-		LRK54_RS15835	0.33	-0.1
3,487,137	-		LRK54_RS15835	0.33	-1.1
3,487,137	-		LRK54_RS15835	0.33	+0.9
3,487,137	-		LRK54_RS15835	0.33	-1.3
3,487,137	-		LRK54_RS15835	0.33	+0.1
3,487,137	-		LRK54_RS15835	0.33	+1.0
3,487,137	-		LRK54_RS15835	0.33	+0.2
3,487,137	-		LRK54_RS15835	0.33	-0.8
3,487,137	-		LRK54_RS15835	0.33	-0.2
3,487,142	+		LRK54_RS15835	0.33	+0.1
3,487,142	+		LRK54_RS15835	0.33	+0.4
3,487,143	-		LRK54_RS15835	0.33	-0.9
3,487,143	-		LRK54_RS15835	0.33	-0.2
3,487,143	-		LRK54_RS15835	0.33	-1.3
3,487,382	+		LRK54_RS15835	0.42	-1.0
3,487,383	-		LRK54_RS15835	0.42	+0.1
3,487,415	+		LRK54_RS15835	0.43	+0.5
3,487,415	+		LRK54_RS15835	0.43	-0.3
3,487,415	+		LRK54_RS15835	0.43	-0.2
3,487,415	+		LRK54_RS15835	0.43	-0.4
3,487,415	+		LRK54_RS15835	0.43	-0.6
3,487,415	+		LRK54_RS15835	0.43	+0.2
3,487,415	+		LRK54_RS15835	0.43	-0.3
3,487,415	+		LRK54_RS15835	0.43	-0.1
3,487,415	+		LRK54_RS15835	0.43	+0.6
3,487,415	+		LRK54_RS15835	0.43	+1.6
3,487,416	-		LRK54_RS15835	0.43	-0.2
3,487,416	-		LRK54_RS15835	0.43	+0.7
3,487,416	-		LRK54_RS15835	0.43	-0.2
3,487,416	-		LRK54_RS15835	0.43	+0.9
3,487,416	-		LRK54_RS15835	0.43	-1.6
3,487,451	+		LRK54_RS15835	0.44	-0.2
3,487,475	+		LRK54_RS15835	0.45	+1.0
3,487,475	+		LRK54_RS15835	0.45	+0.8
3,487,475	+		LRK54_RS15835	0.45	+0.8
3,487,475	+		LRK54_RS15835	0.45	-0.4
3,487,475	+		LRK54_RS15835	0.45	-0.7
3,487,475	+		LRK54_RS15835	0.45	+0.7
3,487,475	+		LRK54_RS15835	0.45	-1.1
3,487,475	+		LRK54_RS15835	0.45	-0.8
3,487,475	+		LRK54_RS15835	0.45	+0.7
3,487,475	+		LRK54_RS15835	0.45	+0.5
3,487,475	+		LRK54_RS15835	0.45	+0.3
3,487,475	+		LRK54_RS15835	0.45	+0.1
3,487,475	+		LRK54_RS15835	0.45	+1.8
3,487,475	+		LRK54_RS15835	0.45	+0.2
3,487,475	+		LRK54_RS15835	0.45	+0.1
3,487,476	-		LRK54_RS15835	0.45	-1.1
3,487,476	-		LRK54_RS15835	0.45	+0.4
3,487,476	-		LRK54_RS15835	0.45	-0.0
3,487,476	-		LRK54_RS15835	0.45	-0.3
3,487,476	-		LRK54_RS15835	0.45	+0.7
3,487,476	-		LRK54_RS15835	0.45	+0.9
3,487,476	-		LRK54_RS15835	0.45	+1.1
3,487,476	-		LRK54_RS15835	0.45	-0.1
3,487,476	-		LRK54_RS15835	0.45	+0.4
3,487,476	-		LRK54_RS15835	0.45	-0.5
3,487,476	-		LRK54_RS15835	0.45	+0.6
3,487,476	-		LRK54_RS15835	0.45	-0.8
3,487,476	-		LRK54_RS15835	0.45	-0.0
3,487,643	+		LRK54_RS15835	0.51	+0.2
3,487,643	+		LRK54_RS15835	0.51	+0.4
3,487,643	+		LRK54_RS15835	0.51	-0.8
3,487,643	+		LRK54_RS15835	0.51	-0.7
3,487,643	+		LRK54_RS15835	0.51	-0.0
3,487,643	+		LRK54_RS15835	0.51	-0.4
3,487,643	+		LRK54_RS15835	0.51	-0.2
3,487,644	-		LRK54_RS15835	0.51	+0.2
3,487,644	-		LRK54_RS15835	0.51	-0.6
3,487,644	-		LRK54_RS15835	0.51	-0.1
3,487,644	-		LRK54_RS15835	0.51	+0.5
3,487,644	-		LRK54_RS15835	0.51	-0.2
3,487,644	-		LRK54_RS15835	0.51	-1.3
3,487,644	-		LRK54_RS15835	0.51	+0.1
3,487,644	-		LRK54_RS15835	0.51	-0.6
3,487,644	-		LRK54_RS15835	0.51	-1.2
3,487,644	-		LRK54_RS15835	0.51	-0.5
3,487,644	-		LRK54_RS15835	0.51	+0.3
3,487,644	-		LRK54_RS15835	0.51	+0.3
3,487,644	-		LRK54_RS15835	0.51	+0.0
3,487,697	+		LRK54_RS15835	0.53	+0.2
3,487,697	+		LRK54_RS15835	0.53	+0.7
3,487,697	+		LRK54_RS15835	0.53	-0.6
3,487,697	+		LRK54_RS15835	0.53	-0.0
3,487,697	+		LRK54_RS15835	0.53	-1.6
3,487,697	+		LRK54_RS15835	0.53	-0.2
3,487,697	+		LRK54_RS15835	0.53	+0.1
3,487,698	-		LRK54_RS15835	0.53	+0.7
3,487,698	-		LRK54_RS15835	0.53	+0.3
3,487,698	-		LRK54_RS15835	0.53	+0.3
3,487,698	-		LRK54_RS15835	0.53	+0.4
3,487,698	-		LRK54_RS15835	0.53	-0.2
3,487,736	+		LRK54_RS15835	0.55	-0.0
3,487,736	+		LRK54_RS15835	0.55	-0.0
3,487,736	+		LRK54_RS15835	0.55	+0.7
3,487,736	+		LRK54_RS15835	0.55	-0.7
3,487,736	+		LRK54_RS15835	0.55	+0.2
3,487,736	+		LRK54_RS15835	0.55	-1.0
3,487,736	+		LRK54_RS15835	0.55	-0.3
3,487,736	+		LRK54_RS15835	0.55	-1.2
3,487,737	-		LRK54_RS15835	0.55	-1.5
3,487,737	-		LRK54_RS15835	0.55	-0.0
3,487,737	-		LRK54_RS15835	0.55	-0.1
3,487,737	-		LRK54_RS15835	0.55	+0.3
3,487,737	-		LRK54_RS15835	0.55	-0.6
3,487,737	-		LRK54_RS15835	0.55	-0.8
3,487,737	-		LRK54_RS15835	0.55	-0.8
3,487,737	-		LRK54_RS15835	0.55	+0.8
3,487,737	-		LRK54_RS15835	0.55	-0.3
3,487,737	-		LRK54_RS15835	0.55	+0.0
3,487,769	+		LRK54_RS15835	0.56	+1.1
3,487,769	+		LRK54_RS15835	0.56	+0.3
3,487,769	+		LRK54_RS15835	0.56	+0.8
3,487,769	+		LRK54_RS15835	0.56	-0.2
3,487,769	+		LRK54_RS15835	0.56	-0.4
3,487,769	+		LRK54_RS15835	0.56	+0.1
3,487,769	+		LRK54_RS15835	0.56	-0.5
3,487,769	+		LRK54_RS15835	0.56	-0.5
3,487,769	+		LRK54_RS15835	0.56	+0.3
3,487,769	+		LRK54_RS15835	0.56	-0.6
3,487,769	+		LRK54_RS15835	0.56	-0.2
3,487,770	-		LRK54_RS15835	0.56	-0.4
3,487,770	-		LRK54_RS15835	0.56	-0.0
3,487,770	-		LRK54_RS15835	0.56	-1.4
3,487,770	-		LRK54_RS15835	0.56	+0.2
3,487,770	-		LRK54_RS15835	0.56	-0.1
3,487,841	+		LRK54_RS15835	0.59	-1.3
3,487,841	+		LRK54_RS15835	0.59	+0.4
3,487,841	+		LRK54_RS15835	0.59	-1.3
3,487,841	+		LRK54_RS15835	0.59	-1.5
3,487,841	+		LRK54_RS15835	0.59	-0.2
3,487,842	-		LRK54_RS15835	0.59	+0.5
3,487,842	-		LRK54_RS15835	0.59	-0.3
3,487,842	-		LRK54_RS15835	0.59	-0.5
3,487,842	-		LRK54_RS15835	0.59	-1.6
3,487,892	+		LRK54_RS15835	0.60	+0.3
3,487,892	+		LRK54_RS15835	0.60	+0.5
3,487,892	+		LRK54_RS15835	0.60	+0.2
3,487,892	+		LRK54_RS15835	0.60	+0.5
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