Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22220

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS22215 and HSERO_RS22220 are separated by 134 nucleotidesHSERO_RS22220 and HSERO_RS22225 are separated by 134 nucleotides HSERO_RS22215: HSERO_RS22215 - branched-chain amino acid ABC transporter permease, at 5,079,526 to 5,080,497 _RS22215 HSERO_RS22220: HSERO_RS22220 - D-ribose transporter ATP-binding protein, at 5,080,632 to 5,082,146 _RS22220 HSERO_RS22225: HSERO_RS22225 - ABC transporter substrate-binding protein, at 5,082,281 to 5,083,258 _RS22225 Position (kb) 5080 5081 5082 5083Strain fitness (log2 ratio) -2 -1 0 1 2at 5079.818 kb on + strand, within HSERO_RS22215at 5079.825 kb on + strand, within HSERO_RS22215at 5079.826 kb on - strand, within HSERO_RS22215at 5080.019 kb on - strand, within HSERO_RS22215at 5080.441 kb on - strandat 5080.478 kb on + strandat 5080.481 kb on - strandat 5080.685 kb on - strandat 5080.698 kb on + strandat 5080.712 kb on - strandat 5080.769 kb on + strandat 5080.771 kb on + strandat 5080.895 kb on + strand, within HSERO_RS22220at 5080.900 kb on + strand, within HSERO_RS22220at 5081.029 kb on - strand, within HSERO_RS22220at 5081.250 kb on - strand, within HSERO_RS22220at 5081.475 kb on + strand, within HSERO_RS22220at 5081.483 kb on + strand, within HSERO_RS22220at 5081.503 kb on + strand, within HSERO_RS22220at 5081.503 kb on + strand, within HSERO_RS22220at 5081.511 kb on - strand, within HSERO_RS22220at 5081.643 kb on - strand, within HSERO_RS22220at 5081.684 kb on + strand, within HSERO_RS22220at 5081.853 kb on - strand, within HSERO_RS22220at 5081.985 kb on - strand, within HSERO_RS22220at 5081.987 kb on + strand, within HSERO_RS22220at 5081.987 kb on + strand, within HSERO_RS22220at 5082.054 kb on - strandat 5082.219 kb on - strandat 5082.460 kb on + strand, within HSERO_RS22225at 5082.779 kb on + strand, within HSERO_RS22225at 5082.915 kb on + strand, within HSERO_RS22225at 5082.941 kb on - strand, within HSERO_RS22225at 5082.946 kb on + strand, within HSERO_RS22225at 5082.980 kb on + strand, within HSERO_RS22225

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,079,818 + HSERO_RS22215 0.30 -0.1
5,079,825 + HSERO_RS22215 0.31 +1.2
5,079,826 - HSERO_RS22215 0.31 +0.7
5,080,019 - HSERO_RS22215 0.51 +1.0
5,080,441 - -1.8
5,080,478 + +0.6
5,080,481 - +2.0
5,080,685 - +0.8
5,080,698 + -0.7
5,080,712 - -1.6
5,080,769 + -0.4
5,080,771 + +0.2
5,080,895 + HSERO_RS22220 0.17 -2.1
5,080,900 + HSERO_RS22220 0.18 -0.5
5,081,029 - HSERO_RS22220 0.26 -1.4
5,081,250 - HSERO_RS22220 0.41 +0.1
5,081,475 + HSERO_RS22220 0.56 -0.8
5,081,483 + HSERO_RS22220 0.56 -0.2
5,081,503 + HSERO_RS22220 0.57 -0.3
5,081,503 + HSERO_RS22220 0.57 -1.6
5,081,511 - HSERO_RS22220 0.58 -1.4
5,081,643 - HSERO_RS22220 0.67 +0.2
5,081,684 + HSERO_RS22220 0.69 -0.2
5,081,853 - HSERO_RS22220 0.81 -1.3
5,081,985 - HSERO_RS22220 0.89 -1.2
5,081,987 + HSERO_RS22220 0.89 -0.4
5,081,987 + HSERO_RS22220 0.89 -0.3
5,082,054 - +0.0
5,082,219 - -0.2
5,082,460 + HSERO_RS22225 0.18 +0.3
5,082,779 + HSERO_RS22225 0.51 -1.4
5,082,915 + HSERO_RS22225 0.65 +0.3
5,082,941 - HSERO_RS22225 0.67 +0.0
5,082,946 + HSERO_RS22225 0.68 +0.3
5,082,980 + HSERO_RS22225 0.71 -0.4

Or see this region's nucleotide sequence