Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14410

Experiment: Dextran 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextran 5 mg/ml (C)
1,209,719	+		HMPREF1058_RS14415	0.23	-0.9
1,209,797	+		HMPREF1058_RS14415	0.29	-0.1
1,209,798	-		HMPREF1058_RS14415	0.29	-0.8
1,209,801	-		HMPREF1058_RS14415	0.29	-1.2
1,209,830	+		HMPREF1058_RS14415	0.32	-1.2
1,209,830	+		HMPREF1058_RS14415	0.32	+0.5
1,209,836	+		HMPREF1058_RS14415	0.32	-0.2
1,209,873	-		HMPREF1058_RS14415	0.35	+1.0
1,209,982	+		HMPREF1058_RS14415	0.44	-2.6
1,210,078	+		HMPREF1058_RS14415	0.52	-1.8
1,210,218	+		HMPREF1058_RS14415	0.63	-0.5
1,210,228	-		HMPREF1058_RS14415	0.64	-1.1
1,210,315	-		HMPREF1058_RS14415	0.71	-3.7
1,210,363	+		HMPREF1058_RS14415	0.75	+0.1
1,210,364	-		HMPREF1058_RS14415	0.75	+0.6
1,210,364	-		HMPREF1058_RS14415	0.75	+2.7
1,210,366	+		HMPREF1058_RS14415	0.75	+0.3
1,210,366	+		HMPREF1058_RS14415	0.75	-1.9
1,210,594	+				-0.9
1,210,622	+				-1.3
1,210,643	+				-0.2
1,210,662	+				-0.3
1,210,675	-				-1.3
1,210,676	+				+0.2
1,210,691	+				-1.5
1,210,691	+				+0.6
1,210,724	-				-1.8
1,210,733	-				-2.3
1,210,741	+				-0.3
1,210,744	+				-0.6
1,210,752	+				-2.2
1,210,773	+				-0.4
1,210,813	+				+1.0
1,210,988	+		HMPREF1058_RS14410	0.17	-2.3
1,210,989	-		HMPREF1058_RS14410	0.17	-1.3
1,210,989	-		HMPREF1058_RS14410	0.17	-0.4
1,211,136	+		HMPREF1058_RS14410	0.25	-2.6
1,211,197	+		HMPREF1058_RS14410	0.28	+0.1
1,211,493	-		HMPREF1058_RS14410	0.44	-0.0
1,211,496	+		HMPREF1058_RS14410	0.44	-1.0
1,211,497	-		HMPREF1058_RS14410	0.44	-0.7
1,211,579	-		HMPREF1058_RS14410	0.49	-1.1
1,211,579	-		HMPREF1058_RS14410	0.49	+0.1
1,211,684	-		HMPREF1058_RS14410	0.54	-1.5
1,211,685	+		HMPREF1058_RS14410	0.54	+0.3
1,211,686	-		HMPREF1058_RS14410	0.54	-0.0
1,211,687	+		HMPREF1058_RS14410	0.54	-0.5
1,211,688	-		HMPREF1058_RS14410	0.54	-0.4
1,211,688	-		HMPREF1058_RS14410	0.54	-3.6
1,211,739	+		HMPREF1058_RS14410	0.57	-1.2
1,211,854	+		HMPREF1058_RS14410	0.63	-1.3
1,211,876	+		HMPREF1058_RS14410	0.65	-2.6
1,211,930	+		HMPREF1058_RS14410	0.67	-0.4
1,212,010	+		HMPREF1058_RS14410	0.72	-3.6
1,212,038	+		HMPREF1058_RS14410	0.73	-0.3
1,212,039	-		HMPREF1058_RS14410	0.73	-2.9
1,212,064	-		HMPREF1058_RS14410	0.75	-0.3
1,212,067	-		HMPREF1058_RS14410	0.75	-0.6
1,212,076	+		HMPREF1058_RS14410	0.75	-2.1
1,212,077	-		HMPREF1058_RS14410	0.75	-2.4
1,212,196	+		HMPREF1058_RS14410	0.82	+0.1
1,212,224	-		HMPREF1058_RS14410	0.83	+0.0
1,212,226	-		HMPREF1058_RS14410	0.83	-2.9
1,212,226	-		HMPREF1058_RS14410	0.83	+0.7
1,212,293	-		HMPREF1058_RS14410	0.87	-0.2
1,212,461	+				-0.4
1,212,474	+				+0.4
1,212,474	+				-0.7
1,212,475	-				-0.3
1,212,475	-				-0.8
1,212,496	+				+0.6
1,212,570	-				+2.2
1,212,598	+		HMPREF1058_RS14405	0.13	+0.4
1,212,718	+		HMPREF1058_RS14405	0.60	-0.2
1,212,722	-		HMPREF1058_RS14405	0.62	-1.1
1,212,727	-		HMPREF1058_RS14405	0.64	-1.0
1,212,738	+		HMPREF1058_RS14405	0.68	-0.0
1,212,738	+		HMPREF1058_RS14405	0.68	-0.8
1,212,738	+		HMPREF1058_RS14405	0.68	-0.5
1,212,806	+				-1.2
1,212,837	+				-2.4
1,212,840	-				-1.2
1,212,846	+				-2.0
1,212,855	-				-1.9
1,213,012	+				+0.3
1,213,222	+		HMPREF1058_RS14400	0.27	-0.5
1,213,285	+		HMPREF1058_RS14400	0.40	-0.2
1,213,399	-		HMPREF1058_RS14400	0.63	-0.4
1,213,502	-		HMPREF1058_RS14400	0.83	+0.1