Experiment: Dextran 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11470 and HMPREF1058_RS11465 are separated by 307 nucleotides HMPREF1058_RS11465 and HMPREF1058_RS11460 are separated by 116 nucleotides HMPREF1058_RS11460 and HMPREF1058_RS20690 are separated by 218 nucleotides HMPREF1058_RS20690 and HMPREF1058_RS11455 are separated by 165 nucleotides
HMPREF1058_RS11470: HMPREF1058_RS11470 - porin family protein, at 371,161 to 371,859
_RS11470
HMPREF1058_RS11465: HMPREF1058_RS11465 - hypothetical protein, at 372,167 to 372,412
_RS11465
HMPREF1058_RS11460: HMPREF1058_RS11460 - hypothetical protein, at 372,529 to 374,187
_RS11460
HMPREF1058_RS20690: HMPREF1058_RS20690 - AAA family ATPase, at 374,406 to 374,588
_RS20690
HMPREF1058_RS11455: HMPREF1058_RS11455 - PorT family protein, at 374,754 to 375,443
_RS11455
Position (kb) 372
373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 371.560 kb on + strand, within HMPREF1058_RS11470 at 371.579 kb on + strand, within HMPREF1058_RS11470 at 371.579 kb on + strand, within HMPREF1058_RS11470 at 371.584 kb on - strand, within HMPREF1058_RS11470 at 371.617 kb on - strand, within HMPREF1058_RS11470 at 371.792 kb on - strand at 371.812 kb on + strand at 371.813 kb on - strand at 371.840 kb on - strand at 371.840 kb on - strand at 371.850 kb on + strand at 371.902 kb on + strand at 371.922 kb on + strand at 371.922 kb on + strand at 371.939 kb on - strand at 371.940 kb on + strand at 371.940 kb on + strand at 371.941 kb on - strand at 371.948 kb on + strand at 371.962 kb on - strand at 371.964 kb on - strand at 372.044 kb on + strand at 372.065 kb on + strand at 372.080 kb on - strand at 372.107 kb on + strand at 372.128 kb on + strand at 372.135 kb on + strand at 372.136 kb on - strand at 372.164 kb on + strand at 372.164 kb on + strand at 372.182 kb on - strand at 372.195 kb on - strand, within HMPREF1058_RS11465 at 372.195 kb on - strand, within HMPREF1058_RS11465 at 372.199 kb on + strand, within HMPREF1058_RS11465 at 372.199 kb on + strand, within HMPREF1058_RS11465 at 372.254 kb on + strand, within HMPREF1058_RS11465 at 372.257 kb on - strand, within HMPREF1058_RS11465 at 372.296 kb on - strand, within HMPREF1058_RS11465 at 372.399 kb on - strand at 372.412 kb on + strand at 372.466 kb on + strand at 372.473 kb on - strand at 372.496 kb on - strand at 372.588 kb on + strand at 372.601 kb on + strand at 372.702 kb on - strand, within HMPREF1058_RS11460 at 372.846 kb on + strand, within HMPREF1058_RS11460 at 372.846 kb on + strand, within HMPREF1058_RS11460 at 372.846 kb on + strand, within HMPREF1058_RS11460 at 372.846 kb on + strand, within HMPREF1058_RS11460 at 372.847 kb on - strand, within HMPREF1058_RS11460 at 372.964 kb on + strand, within HMPREF1058_RS11460 at 373.002 kb on - strand, within HMPREF1058_RS11460 at 373.007 kb on - strand, within HMPREF1058_RS11460 at 373.007 kb on - strand, within HMPREF1058_RS11460 at 373.045 kb on - strand, within HMPREF1058_RS11460 at 373.086 kb on + strand, within HMPREF1058_RS11460 at 373.086 kb on + strand, within HMPREF1058_RS11460 at 373.177 kb on + strand, within HMPREF1058_RS11460 at 373.178 kb on - strand, within HMPREF1058_RS11460 at 373.178 kb on - strand, within HMPREF1058_RS11460 at 373.178 kb on - strand, within HMPREF1058_RS11460 at 373.178 kb on - strand, within HMPREF1058_RS11460 at 373.179 kb on + strand, within HMPREF1058_RS11460 at 373.180 kb on - strand, within HMPREF1058_RS11460 at 373.240 kb on - strand, within HMPREF1058_RS11460 at 373.243 kb on + strand, within HMPREF1058_RS11460 at 373.243 kb on + strand, within HMPREF1058_RS11460 at 373.279 kb on - strand, within HMPREF1058_RS11460 at 373.311 kb on + strand, within HMPREF1058_RS11460 at 373.312 kb on - strand, within HMPREF1058_RS11460 at 373.350 kb on - strand, within HMPREF1058_RS11460 at 373.352 kb on + strand, within HMPREF1058_RS11460 at 373.353 kb on - strand, within HMPREF1058_RS11460 at 373.353 kb on - strand, within HMPREF1058_RS11460 at 373.385 kb on + strand, within HMPREF1058_RS11460 at 373.396 kb on + strand, within HMPREF1058_RS11460 at 373.396 kb on + strand, within HMPREF1058_RS11460 at 373.396 kb on + strand, within HMPREF1058_RS11460 at 373.396 kb on + strand, within HMPREF1058_RS11460 at 373.397 kb on - strand, within HMPREF1058_RS11460 at 373.397 kb on - strand, within HMPREF1058_RS11460 at 373.397 kb on - strand, within HMPREF1058_RS11460 at 373.397 kb on - strand, within HMPREF1058_RS11460 at 373.397 kb on - strand, within HMPREF1058_RS11460 at 373.404 kb on - strand, within HMPREF1058_RS11460 at 373.421 kb on - strand, within HMPREF1058_RS11460 at 373.440 kb on + strand, within HMPREF1058_RS11460 at 373.511 kb on - strand, within HMPREF1058_RS11460 at 373.543 kb on - strand, within HMPREF1058_RS11460 at 373.558 kb on - strand, within HMPREF1058_RS11460 at 373.563 kb on - strand, within HMPREF1058_RS11460 at 373.588 kb on + strand, within HMPREF1058_RS11460 at 373.605 kb on + strand, within HMPREF1058_RS11460 at 373.614 kb on + strand, within HMPREF1058_RS11460 at 373.619 kb on + strand, within HMPREF1058_RS11460 at 373.619 kb on + strand, within HMPREF1058_RS11460 at 373.620 kb on - strand, within HMPREF1058_RS11460 at 373.624 kb on - strand, within HMPREF1058_RS11460 at 373.635 kb on + strand, within HMPREF1058_RS11460 at 373.648 kb on - strand, within HMPREF1058_RS11460 at 373.673 kb on + strand, within HMPREF1058_RS11460 at 373.868 kb on + strand, within HMPREF1058_RS11460 at 373.868 kb on + strand, within HMPREF1058_RS11460 at 373.869 kb on - strand, within HMPREF1058_RS11460 at 373.869 kb on - strand, within HMPREF1058_RS11460 at 373.994 kb on + strand, within HMPREF1058_RS11460 at 373.998 kb on - strand, within HMPREF1058_RS11460 at 374.036 kb on - strand at 374.098 kb on + strand at 374.171 kb on - strand at 374.173 kb on - strand at 374.173 kb on - strand at 374.176 kb on - strand at 374.190 kb on + strand at 374.190 kb on + strand at 374.191 kb on - strand at 374.211 kb on + strand at 374.361 kb on - strand at 374.370 kb on - strand at 374.373 kb on + strand at 374.383 kb on + strand at 374.445 kb on + strand, within HMPREF1058_RS20690 at 374.463 kb on + strand, within HMPREF1058_RS20690 at 374.561 kb on + strand, within HMPREF1058_RS20690 at 374.592 kb on - strand at 374.679 kb on - strand at 374.722 kb on + strand at 374.803 kb on + strand at 374.804 kb on - strand at 374.834 kb on + strand, within HMPREF1058_RS11455 at 375.056 kb on + strand, within HMPREF1058_RS11455 at 375.063 kb on + strand, within HMPREF1058_RS11455 at 375.063 kb on + strand, within HMPREF1058_RS11455 at 375.064 kb on - strand, within HMPREF1058_RS11455 at 375.075 kb on + strand, within HMPREF1058_RS11455 at 375.116 kb on - strand, within HMPREF1058_RS11455 at 375.152 kb on - strand, within HMPREF1058_RS11455 at 375.161 kb on + strand, within HMPREF1058_RS11455 at 375.179 kb on - strand, within HMPREF1058_RS11455
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C) remove 371,560 + HMPREF1058_RS11470 0.57 -0.3 371,579 + HMPREF1058_RS11470 0.60 -1.0 371,579 + HMPREF1058_RS11470 0.60 -0.2 371,584 - HMPREF1058_RS11470 0.61 +0.1 371,617 - HMPREF1058_RS11470 0.65 +0.0 371,792 - +0.9 371,812 + -0.5 371,813 - +1.1 371,840 - -2.6 371,840 - +0.4 371,850 + -0.3 371,902 + +0.7 371,922 + +0.3 371,922 + +1.6 371,939 - +0.2 371,940 + -2.8 371,940 + -1.4 371,941 - +0.3 371,948 + +0.3 371,962 - +1.1 371,964 - +1.0 372,044 + +0.7 372,065 + +0.6 372,080 - -1.1 372,107 + -0.2 372,128 + -0.5 372,135 + -0.5 372,136 - -0.8 372,164 + -0.4 372,164 + -0.2 372,182 - -2.5 372,195 - HMPREF1058_RS11465 0.11 +0.2 372,195 - HMPREF1058_RS11465 0.11 -0.3 372,199 + HMPREF1058_RS11465 0.13 +0.1 372,199 + HMPREF1058_RS11465 0.13 +3.0 372,254 + HMPREF1058_RS11465 0.35 -0.6 372,257 - HMPREF1058_RS11465 0.37 +1.1 372,296 - HMPREF1058_RS11465 0.52 +0.5 372,399 - -1.0 372,412 + -1.1 372,466 + +0.5 372,473 - +0.2 372,496 - -0.9 372,588 + +0.3 372,601 + +0.5 372,702 - HMPREF1058_RS11460 0.10 -1.8 372,846 + HMPREF1058_RS11460 0.19 -0.7 372,846 + HMPREF1058_RS11460 0.19 -0.3 372,846 + HMPREF1058_RS11460 0.19 -0.1 372,846 + HMPREF1058_RS11460 0.19 +0.3 372,847 - HMPREF1058_RS11460 0.19 -0.3 372,964 + HMPREF1058_RS11460 0.26 -0.2 373,002 - HMPREF1058_RS11460 0.29 -0.9 373,007 - HMPREF1058_RS11460 0.29 -1.1 373,007 - HMPREF1058_RS11460 0.29 +0.5 373,045 - HMPREF1058_RS11460 0.31 -0.4 373,086 + HMPREF1058_RS11460 0.34 +0.7 373,086 + HMPREF1058_RS11460 0.34 +0.3 373,177 + HMPREF1058_RS11460 0.39 -1.6 373,178 - HMPREF1058_RS11460 0.39 +1.7 373,178 - HMPREF1058_RS11460 0.39 -0.2 373,178 - HMPREF1058_RS11460 0.39 -1.0 373,178 - HMPREF1058_RS11460 0.39 -0.3 373,179 + HMPREF1058_RS11460 0.39 -2.4 373,180 - HMPREF1058_RS11460 0.39 -1.3 373,240 - HMPREF1058_RS11460 0.43 -1.1 373,243 + HMPREF1058_RS11460 0.43 +0.4 373,243 + HMPREF1058_RS11460 0.43 -0.3 373,279 - HMPREF1058_RS11460 0.45 +0.5 373,311 + HMPREF1058_RS11460 0.47 +0.4 373,312 - HMPREF1058_RS11460 0.47 -0.7 373,350 - HMPREF1058_RS11460 0.49 +0.8 373,352 + HMPREF1058_RS11460 0.50 +0.7 373,353 - HMPREF1058_RS11460 0.50 -0.1 373,353 - HMPREF1058_RS11460 0.50 -1.5 373,385 + HMPREF1058_RS11460 0.52 -1.2 373,396 + HMPREF1058_RS11460 0.52 +0.8 373,396 + HMPREF1058_RS11460 0.52 +2.0 373,396 + HMPREF1058_RS11460 0.52 -1.2 373,396 + HMPREF1058_RS11460 0.52 +0.3 373,397 - HMPREF1058_RS11460 0.52 -0.3 373,397 - HMPREF1058_RS11460 0.52 +0.5 373,397 - HMPREF1058_RS11460 0.52 -0.9 373,397 - HMPREF1058_RS11460 0.52 -0.1 373,397 - HMPREF1058_RS11460 0.52 -0.3 373,404 - HMPREF1058_RS11460 0.53 -2.0 373,421 - HMPREF1058_RS11460 0.54 -0.9 373,440 + HMPREF1058_RS11460 0.55 -3.2 373,511 - HMPREF1058_RS11460 0.59 -1.2 373,543 - HMPREF1058_RS11460 0.61 +0.0 373,558 - HMPREF1058_RS11460 0.62 +0.5 373,563 - HMPREF1058_RS11460 0.62 -2.0 373,588 + HMPREF1058_RS11460 0.64 +0.2 373,605 + HMPREF1058_RS11460 0.65 +1.4 373,614 + HMPREF1058_RS11460 0.65 +0.4 373,619 + HMPREF1058_RS11460 0.66 +2.0 373,619 + HMPREF1058_RS11460 0.66 +0.8 373,620 - HMPREF1058_RS11460 0.66 +0.6 373,624 - HMPREF1058_RS11460 0.66 -0.9 373,635 + HMPREF1058_RS11460 0.67 -0.4 373,648 - HMPREF1058_RS11460 0.67 +0.2 373,673 + HMPREF1058_RS11460 0.69 -0.9 373,868 + HMPREF1058_RS11460 0.81 -0.1 373,868 + HMPREF1058_RS11460 0.81 +1.4 373,869 - HMPREF1058_RS11460 0.81 +0.3 373,869 - HMPREF1058_RS11460 0.81 -1.3 373,994 + HMPREF1058_RS11460 0.88 +0.2 373,998 - HMPREF1058_RS11460 0.89 +0.6 374,036 - +0.0 374,098 + -1.1 374,171 - +0.7 374,173 - +0.6 374,173 - -0.3 374,176 - +0.1 374,190 + -1.8 374,190 + -0.9 374,191 - +1.2 374,211 + +0.2 374,361 - -0.1 374,370 - +1.1 374,373 + +1.0 374,383 + +0.4 374,445 + HMPREF1058_RS20690 0.21 -0.6 374,463 + HMPREF1058_RS20690 0.31 -0.3 374,561 + HMPREF1058_RS20690 0.85 -0.8 374,592 - -0.1 374,679 - +0.3 374,722 + +0.6 374,803 + -1.9 374,804 - +0.0 374,834 + HMPREF1058_RS11455 0.12 -0.2 375,056 + HMPREF1058_RS11455 0.44 -0.1 375,063 + HMPREF1058_RS11455 0.45 -0.3 375,063 + HMPREF1058_RS11455 0.45 -2.0 375,064 - HMPREF1058_RS11455 0.45 +0.1 375,075 + HMPREF1058_RS11455 0.47 -0.6 375,116 - HMPREF1058_RS11455 0.52 +0.7 375,152 - HMPREF1058_RS11455 0.58 -1.3 375,161 + HMPREF1058_RS11455 0.59 -1.0 375,179 - HMPREF1058_RS11455 0.62 +0.5
Or see this region's nucleotide sequence