Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11450

Experiment: Dextran 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS20690 and HMPREF1058_RS11455 are separated by 165 nucleotidesHMPREF1058_RS11455 and HMPREF1058_RS11450 are separated by 134 nucleotidesHMPREF1058_RS11450 and HMPREF1058_RS11445 are separated by 42 nucleotidesHMPREF1058_RS11445 and HMPREF1058_RS11440 are separated by 206 nucleotides HMPREF1058_RS20690: HMPREF1058_RS20690 - AAA family ATPase, at 374,406 to 374,588 _RS20690 HMPREF1058_RS11455: HMPREF1058_RS11455 - PorT family protein, at 374,754 to 375,443 _RS11455 HMPREF1058_RS11450: HMPREF1058_RS11450 - hypothetical protein, at 375,578 to 377,245 _RS11450 HMPREF1058_RS11445: HMPREF1058_RS11445 - PorT family protein, at 377,288 to 377,875 _RS11445 HMPREF1058_RS11440: HMPREF1058_RS11440 - family 20 glycosylhydrolase, at 378,082 to 380,061 _RS11440 Position (kb) 375 376 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 374.592 kb on - strandat 374.679 kb on - strandat 374.722 kb on + strandat 374.803 kb on + strandat 374.804 kb on - strandat 374.834 kb on + strand, within HMPREF1058_RS11455at 375.056 kb on + strand, within HMPREF1058_RS11455at 375.063 kb on + strand, within HMPREF1058_RS11455at 375.063 kb on + strand, within HMPREF1058_RS11455at 375.064 kb on - strand, within HMPREF1058_RS11455at 375.075 kb on + strand, within HMPREF1058_RS11455at 375.116 kb on - strand, within HMPREF1058_RS11455at 375.152 kb on - strand, within HMPREF1058_RS11455at 375.161 kb on + strand, within HMPREF1058_RS11455at 375.179 kb on - strand, within HMPREF1058_RS11455at 375.288 kb on + strand, within HMPREF1058_RS11455at 375.336 kb on - strand, within HMPREF1058_RS11455at 375.337 kb on + strand, within HMPREF1058_RS11455at 375.402 kb on + strandat 375.402 kb on + strandat 375.574 kb on - strandat 375.598 kb on + strandat 375.637 kb on + strandat 375.648 kb on - strandat 375.689 kb on + strandat 375.689 kb on + strandat 375.747 kb on + strand, within HMPREF1058_RS11450at 375.767 kb on + strand, within HMPREF1058_RS11450at 375.767 kb on + strand, within HMPREF1058_RS11450at 375.814 kb on + strand, within HMPREF1058_RS11450at 376.013 kb on - strand, within HMPREF1058_RS11450at 376.013 kb on - strand, within HMPREF1058_RS11450at 376.059 kb on + strand, within HMPREF1058_RS11450at 376.060 kb on - strand, within HMPREF1058_RS11450at 376.111 kb on + strand, within HMPREF1058_RS11450at 376.143 kb on - strand, within HMPREF1058_RS11450at 376.158 kb on + strand, within HMPREF1058_RS11450at 376.158 kb on + strand, within HMPREF1058_RS11450at 376.158 kb on + strand, within HMPREF1058_RS11450at 376.159 kb on - strand, within HMPREF1058_RS11450at 376.159 kb on - strand, within HMPREF1058_RS11450at 376.159 kb on - strand, within HMPREF1058_RS11450at 376.258 kb on - strand, within HMPREF1058_RS11450at 376.258 kb on - strand, within HMPREF1058_RS11450at 376.262 kb on - strand, within HMPREF1058_RS11450at 376.338 kb on + strand, within HMPREF1058_RS11450at 376.338 kb on + strand, within HMPREF1058_RS11450at 376.338 kb on + strand, within HMPREF1058_RS11450at 376.339 kb on - strand, within HMPREF1058_RS11450at 376.429 kb on + strand, within HMPREF1058_RS11450at 376.432 kb on + strand, within HMPREF1058_RS11450at 376.498 kb on - strand, within HMPREF1058_RS11450at 376.516 kb on + strand, within HMPREF1058_RS11450at 376.519 kb on + strand, within HMPREF1058_RS11450at 376.523 kb on + strand, within HMPREF1058_RS11450at 376.541 kb on - strand, within HMPREF1058_RS11450at 376.598 kb on - strand, within HMPREF1058_RS11450at 376.648 kb on + strand, within HMPREF1058_RS11450at 376.665 kb on + strand, within HMPREF1058_RS11450at 376.666 kb on - strand, within HMPREF1058_RS11450at 376.729 kb on + strand, within HMPREF1058_RS11450at 376.746 kb on + strand, within HMPREF1058_RS11450at 376.746 kb on + strand, within HMPREF1058_RS11450at 376.746 kb on + strand, within HMPREF1058_RS11450at 376.750 kb on + strand, within HMPREF1058_RS11450at 376.750 kb on + strand, within HMPREF1058_RS11450at 376.751 kb on - strand, within HMPREF1058_RS11450at 376.751 kb on - strand, within HMPREF1058_RS11450at 376.751 kb on - strand, within HMPREF1058_RS11450at 376.800 kb on + strand, within HMPREF1058_RS11450at 376.801 kb on + strand, within HMPREF1058_RS11450at 376.801 kb on + strand, within HMPREF1058_RS11450at 376.801 kb on + strand, within HMPREF1058_RS11450at 376.802 kb on - strand, within HMPREF1058_RS11450at 376.804 kb on + strand, within HMPREF1058_RS11450at 376.804 kb on + strand, within HMPREF1058_RS11450at 376.805 kb on - strand, within HMPREF1058_RS11450at 376.805 kb on - strand, within HMPREF1058_RS11450at 376.806 kb on + strand, within HMPREF1058_RS11450at 376.809 kb on - strand, within HMPREF1058_RS11450at 376.809 kb on - strand, within HMPREF1058_RS11450at 376.924 kb on - strand, within HMPREF1058_RS11450at 376.935 kb on - strand, within HMPREF1058_RS11450at 376.964 kb on + strand, within HMPREF1058_RS11450at 377.074 kb on + strand, within HMPREF1058_RS11450at 377.139 kb on + strandat 377.204 kb on + strandat 377.204 kb on + strandat 377.205 kb on - strandat 377.205 kb on - strandat 377.235 kb on + strandat 377.236 kb on - strandat 377.241 kb on + strandat 377.296 kb on + strandat 377.296 kb on + strandat 377.296 kb on + strandat 377.304 kb on - strandat 377.360 kb on - strand, within HMPREF1058_RS11445at 377.373 kb on + strand, within HMPREF1058_RS11445at 377.418 kb on + strand, within HMPREF1058_RS11445at 377.461 kb on + strand, within HMPREF1058_RS11445at 377.482 kb on - strand, within HMPREF1058_RS11445at 377.500 kb on + strand, within HMPREF1058_RS11445at 377.520 kb on + strand, within HMPREF1058_RS11445at 377.520 kb on + strand, within HMPREF1058_RS11445at 377.529 kb on + strand, within HMPREF1058_RS11445at 377.578 kb on + strand, within HMPREF1058_RS11445at 377.579 kb on - strand, within HMPREF1058_RS11445at 377.669 kb on - strand, within HMPREF1058_RS11445at 377.687 kb on + strand, within HMPREF1058_RS11445at 377.688 kb on - strand, within HMPREF1058_RS11445at 377.688 kb on - strand, within HMPREF1058_RS11445at 377.691 kb on + strand, within HMPREF1058_RS11445at 377.691 kb on + strand, within HMPREF1058_RS11445at 377.692 kb on - strand, within HMPREF1058_RS11445at 377.692 kb on - strand, within HMPREF1058_RS11445at 377.718 kb on + strand, within HMPREF1058_RS11445at 377.914 kb on - strandat 377.916 kb on - strandat 377.936 kb on - strandat 377.984 kb on - strandat 377.984 kb on - strandat 377.984 kb on - strandat 378.031 kb on + strandat 378.076 kb on + strandat 378.076 kb on + strandat 378.077 kb on - strandat 378.175 kb on - strandat 378.176 kb on + strandat 378.176 kb on + strandat 378.176 kb on + strandat 378.177 kb on - strandat 378.201 kb on + strandat 378.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C)
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374,592 - -0.1
374,679 - +0.3
374,722 + +0.6
374,803 + -1.9
374,804 - +0.0
374,834 + HMPREF1058_RS11455 0.12 -0.2
375,056 + HMPREF1058_RS11455 0.44 -0.1
375,063 + HMPREF1058_RS11455 0.45 -0.3
375,063 + HMPREF1058_RS11455 0.45 -2.0
375,064 - HMPREF1058_RS11455 0.45 +0.1
375,075 + HMPREF1058_RS11455 0.47 -0.6
375,116 - HMPREF1058_RS11455 0.52 +0.7
375,152 - HMPREF1058_RS11455 0.58 -1.3
375,161 + HMPREF1058_RS11455 0.59 -1.0
375,179 - HMPREF1058_RS11455 0.62 +0.5
375,288 + HMPREF1058_RS11455 0.77 -2.3
375,336 - HMPREF1058_RS11455 0.84 +0.3
375,337 + HMPREF1058_RS11455 0.84 -1.2
375,402 + +1.0
375,402 + -1.6
375,574 - +0.1
375,598 + -1.0
375,637 + -2.5
375,648 - +0.2
375,689 + +1.8
375,689 + +2.6
375,747 + HMPREF1058_RS11450 0.10 +2.2
375,767 + HMPREF1058_RS11450 0.11 -0.3
375,767 + HMPREF1058_RS11450 0.11 -0.2
375,814 + HMPREF1058_RS11450 0.14 +0.4
376,013 - HMPREF1058_RS11450 0.26 -0.9
376,013 - HMPREF1058_RS11450 0.26 -1.4
376,059 + HMPREF1058_RS11450 0.29 +0.3
376,060 - HMPREF1058_RS11450 0.29 -0.8
376,111 + HMPREF1058_RS11450 0.32 +0.8
376,143 - HMPREF1058_RS11450 0.34 -0.0
376,158 + HMPREF1058_RS11450 0.35 -0.5
376,158 + HMPREF1058_RS11450 0.35 -0.6
376,158 + HMPREF1058_RS11450 0.35 -0.2
376,159 - HMPREF1058_RS11450 0.35 -1.8
376,159 - HMPREF1058_RS11450 0.35 +0.6
376,159 - HMPREF1058_RS11450 0.35 +0.6
376,258 - HMPREF1058_RS11450 0.41 +0.3
376,258 - HMPREF1058_RS11450 0.41 +0.0
376,262 - HMPREF1058_RS11450 0.41 +1.0
376,338 + HMPREF1058_RS11450 0.46 -2.1
376,338 + HMPREF1058_RS11450 0.46 -0.2
376,338 + HMPREF1058_RS11450 0.46 +0.4
376,339 - HMPREF1058_RS11450 0.46 +0.3
376,429 + HMPREF1058_RS11450 0.51 -2.2
376,432 + HMPREF1058_RS11450 0.51 -3.3
376,498 - HMPREF1058_RS11450 0.55 +0.3
376,516 + HMPREF1058_RS11450 0.56 +1.1
376,519 + HMPREF1058_RS11450 0.56 +2.1
376,523 + HMPREF1058_RS11450 0.57 -0.2
376,541 - HMPREF1058_RS11450 0.58 +0.1
376,598 - HMPREF1058_RS11450 0.61 +0.4
376,648 + HMPREF1058_RS11450 0.64 -0.5
376,665 + HMPREF1058_RS11450 0.65 +0.1
376,666 - HMPREF1058_RS11450 0.65 -0.8
376,729 + HMPREF1058_RS11450 0.69 +1.2
376,746 + HMPREF1058_RS11450 0.70 -0.2
376,746 + HMPREF1058_RS11450 0.70 -1.6
376,746 + HMPREF1058_RS11450 0.70 +0.7
376,750 + HMPREF1058_RS11450 0.70 +1.4
376,750 + HMPREF1058_RS11450 0.70 +0.5
376,751 - HMPREF1058_RS11450 0.70 -0.0
376,751 - HMPREF1058_RS11450 0.70 +2.3
376,751 - HMPREF1058_RS11450 0.70 -0.1
376,800 + HMPREF1058_RS11450 0.73 -0.6
376,801 + HMPREF1058_RS11450 0.73 -1.6
376,801 + HMPREF1058_RS11450 0.73 -0.1
376,801 + HMPREF1058_RS11450 0.73 -1.2
376,802 - HMPREF1058_RS11450 0.73 -0.5
376,804 + HMPREF1058_RS11450 0.74 +0.7
376,804 + HMPREF1058_RS11450 0.74 -2.8
376,805 - HMPREF1058_RS11450 0.74 +0.0
376,805 - HMPREF1058_RS11450 0.74 -1.5
376,806 + HMPREF1058_RS11450 0.74 +0.7
376,809 - HMPREF1058_RS11450 0.74 +1.0
376,809 - HMPREF1058_RS11450 0.74 +0.7
376,924 - HMPREF1058_RS11450 0.81 +1.0
376,935 - HMPREF1058_RS11450 0.81 +1.1
376,964 + HMPREF1058_RS11450 0.83 -0.9
377,074 + HMPREF1058_RS11450 0.90 +0.7
377,139 + -2.2
377,204 + +0.8
377,204 + -1.2
377,205 - +0.2
377,205 - -0.4
377,235 + +0.4
377,236 - +0.2
377,241 + +2.1
377,296 + -0.9
377,296 + -0.3
377,296 + +0.3
377,304 - +0.1
377,360 - HMPREF1058_RS11445 0.12 -2.9
377,373 + HMPREF1058_RS11445 0.14 +1.1
377,418 + HMPREF1058_RS11445 0.22 -0.2
377,461 + HMPREF1058_RS11445 0.29 +1.8
377,482 - HMPREF1058_RS11445 0.33 +0.5
377,500 + HMPREF1058_RS11445 0.36 -3.1
377,520 + HMPREF1058_RS11445 0.39 -0.2
377,520 + HMPREF1058_RS11445 0.39 +0.2
377,529 + HMPREF1058_RS11445 0.41 -1.3
377,578 + HMPREF1058_RS11445 0.49 -0.2
377,579 - HMPREF1058_RS11445 0.49 +0.1
377,669 - HMPREF1058_RS11445 0.65 +0.5
377,687 + HMPREF1058_RS11445 0.68 -0.1
377,688 - HMPREF1058_RS11445 0.68 +0.8
377,688 - HMPREF1058_RS11445 0.68 -0.2
377,691 + HMPREF1058_RS11445 0.69 +0.8
377,691 + HMPREF1058_RS11445 0.69 -0.0
377,692 - HMPREF1058_RS11445 0.69 -1.4
377,692 - HMPREF1058_RS11445 0.69 -1.9
377,718 + HMPREF1058_RS11445 0.73 -1.0
377,914 - +1.8
377,916 - +0.2
377,936 - -2.3
377,984 - +0.3
377,984 - +0.1
377,984 - +0.8
378,031 + +0.5
378,076 + +0.7
378,076 + +0.3
378,077 - +0.6
378,175 - +0.1
378,176 + -0.4
378,176 + -1.3
378,176 + +0.6
378,177 - -0.0
378,201 + -1.2
378,204 - -1.0

Or see this region's nucleotide sequence