Experiment: Dextran 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04815 and HMPREF1058_RS04810 are separated by 84 nucleotides HMPREF1058_RS04810 and HMPREF1058_RS04805 overlap by 4 nucleotides HMPREF1058_RS04805 and HMPREF1058_RS04800 overlap by 11 nucleotides
HMPREF1058_RS04815: HMPREF1058_RS04815 - hypothetical protein, at 309,218 to 310,216
_RS04815
HMPREF1058_RS04810: HMPREF1058_RS04810 - hypothetical protein, at 310,301 to 314,413
_RS04810
HMPREF1058_RS04805: HMPREF1058_RS04805 - hypothetical protein, at 314,410 to 314,895
_RS04805
HMPREF1058_RS04800: HMPREF1058_RS04800 - ankyrin repeat domain-containing protein, at 314,885 to 316,462
_RS04800
Position (kb) 310
311
312
313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 309.326 kb on + strand, within HMPREF1058_RS04815 at 309.326 kb on + strand, within HMPREF1058_RS04815 at 309.385 kb on + strand, within HMPREF1058_RS04815 at 309.385 kb on + strand, within HMPREF1058_RS04815 at 309.522 kb on - strand, within HMPREF1058_RS04815 at 309.524 kb on + strand, within HMPREF1058_RS04815 at 309.527 kb on + strand, within HMPREF1058_RS04815 at 309.528 kb on - strand, within HMPREF1058_RS04815 at 309.583 kb on + strand, within HMPREF1058_RS04815 at 309.584 kb on - strand, within HMPREF1058_RS04815 at 309.627 kb on + strand, within HMPREF1058_RS04815 at 309.627 kb on + strand, within HMPREF1058_RS04815 at 309.641 kb on - strand, within HMPREF1058_RS04815 at 309.658 kb on + strand, within HMPREF1058_RS04815 at 309.659 kb on - strand, within HMPREF1058_RS04815 at 309.659 kb on - strand, within HMPREF1058_RS04815 at 309.664 kb on + strand, within HMPREF1058_RS04815 at 309.867 kb on + strand, within HMPREF1058_RS04815 at 309.868 kb on - strand, within HMPREF1058_RS04815 at 309.868 kb on - strand, within HMPREF1058_RS04815 at 309.874 kb on + strand, within HMPREF1058_RS04815 at 309.874 kb on + strand, within HMPREF1058_RS04815 at 309.875 kb on - strand, within HMPREF1058_RS04815 at 309.875 kb on - strand, within HMPREF1058_RS04815 at 309.972 kb on - strand, within HMPREF1058_RS04815 at 309.973 kb on + strand, within HMPREF1058_RS04815 at 309.974 kb on - strand, within HMPREF1058_RS04815 at 309.974 kb on - strand, within HMPREF1058_RS04815 at 309.975 kb on + strand, within HMPREF1058_RS04815 at 309.975 kb on + strand, within HMPREF1058_RS04815 at 309.976 kb on - strand, within HMPREF1058_RS04815 at 309.977 kb on + strand, within HMPREF1058_RS04815 at 309.978 kb on - strand, within HMPREF1058_RS04815 at 309.987 kb on - strand, within HMPREF1058_RS04815 at 310.068 kb on + strand, within HMPREF1058_RS04815 at 310.068 kb on + strand, within HMPREF1058_RS04815 at 310.160 kb on + strand at 310.160 kb on + strand at 310.160 kb on + strand at 310.160 kb on + strand at 310.161 kb on - strand at 310.161 kb on - strand at 310.252 kb on - strand at 310.257 kb on - strand at 310.286 kb on + strand at 310.287 kb on - strand at 310.316 kb on - strand at 310.316 kb on - strand at 310.316 kb on - strand at 310.316 kb on - strand at 310.338 kb on + strand at 310.732 kb on + strand, within HMPREF1058_RS04810 at 310.780 kb on + strand, within HMPREF1058_RS04810 at 310.781 kb on - strand, within HMPREF1058_RS04810 at 310.784 kb on + strand, within HMPREF1058_RS04810 at 310.784 kb on + strand, within HMPREF1058_RS04810 at 310.785 kb on - strand, within HMPREF1058_RS04810 at 310.785 kb on - strand, within HMPREF1058_RS04810 at 310.785 kb on - strand, within HMPREF1058_RS04810 at 310.894 kb on + strand, within HMPREF1058_RS04810 at 310.894 kb on + strand, within HMPREF1058_RS04810 at 310.895 kb on - strand, within HMPREF1058_RS04810 at 311.016 kb on - strand, within HMPREF1058_RS04810 at 311.089 kb on + strand, within HMPREF1058_RS04810 at 311.090 kb on - strand, within HMPREF1058_RS04810 at 311.094 kb on - strand, within HMPREF1058_RS04810 at 311.217 kb on + strand, within HMPREF1058_RS04810 at 311.223 kb on - strand, within HMPREF1058_RS04810 at 311.440 kb on + strand, within HMPREF1058_RS04810 at 311.449 kb on + strand, within HMPREF1058_RS04810 at 311.496 kb on - strand, within HMPREF1058_RS04810 at 311.526 kb on + strand, within HMPREF1058_RS04810 at 311.528 kb on + strand, within HMPREF1058_RS04810 at 311.530 kb on + strand, within HMPREF1058_RS04810 at 311.597 kb on + strand, within HMPREF1058_RS04810 at 311.619 kb on - strand, within HMPREF1058_RS04810 at 311.619 kb on - strand, within HMPREF1058_RS04810 at 311.620 kb on + strand, within HMPREF1058_RS04810 at 311.621 kb on - strand, within HMPREF1058_RS04810 at 311.648 kb on + strand, within HMPREF1058_RS04810 at 311.651 kb on - strand, within HMPREF1058_RS04810 at 311.651 kb on - strand, within HMPREF1058_RS04810 at 311.762 kb on + strand, within HMPREF1058_RS04810 at 311.776 kb on + strand, within HMPREF1058_RS04810 at 311.787 kb on + strand, within HMPREF1058_RS04810 at 311.787 kb on + strand, within HMPREF1058_RS04810 at 311.787 kb on + strand, within HMPREF1058_RS04810 at 311.788 kb on - strand, within HMPREF1058_RS04810 at 311.788 kb on - strand, within HMPREF1058_RS04810 at 311.969 kb on - strand, within HMPREF1058_RS04810 at 312.011 kb on - strand, within HMPREF1058_RS04810 at 312.014 kb on + strand, within HMPREF1058_RS04810 at 312.138 kb on + strand, within HMPREF1058_RS04810 at 312.197 kb on + strand, within HMPREF1058_RS04810 at 312.200 kb on - strand, within HMPREF1058_RS04810 at 312.369 kb on - strand, within HMPREF1058_RS04810 at 312.378 kb on + strand, within HMPREF1058_RS04810 at 312.378 kb on + strand, within HMPREF1058_RS04810 at 312.379 kb on - strand, within HMPREF1058_RS04810 at 312.386 kb on - strand, within HMPREF1058_RS04810 at 312.386 kb on - strand, within HMPREF1058_RS04810 at 312.504 kb on + strand, within HMPREF1058_RS04810 at 312.505 kb on - strand, within HMPREF1058_RS04810 at 312.505 kb on - strand, within HMPREF1058_RS04810 at 312.534 kb on + strand, within HMPREF1058_RS04810 at 312.534 kb on + strand, within HMPREF1058_RS04810 at 312.534 kb on + strand, within HMPREF1058_RS04810 at 312.538 kb on + strand, within HMPREF1058_RS04810 at 312.539 kb on - strand, within HMPREF1058_RS04810 at 312.593 kb on - strand, within HMPREF1058_RS04810 at 312.638 kb on + strand, within HMPREF1058_RS04810 at 312.641 kb on - strand, within HMPREF1058_RS04810 at 312.698 kb on + strand, within HMPREF1058_RS04810 at 312.718 kb on + strand, within HMPREF1058_RS04810 at 312.718 kb on + strand, within HMPREF1058_RS04810 at 312.719 kb on - strand, within HMPREF1058_RS04810 at 312.719 kb on - strand, within HMPREF1058_RS04810 at 312.795 kb on - strand, within HMPREF1058_RS04810 at 312.921 kb on - strand, within HMPREF1058_RS04810 at 313.268 kb on - strand, within HMPREF1058_RS04810 at 313.306 kb on - strand, within HMPREF1058_RS04810 at 313.310 kb on - strand, within HMPREF1058_RS04810 at 313.310 kb on - strand, within HMPREF1058_RS04810 at 313.310 kb on - strand, within HMPREF1058_RS04810 at 313.417 kb on + strand, within HMPREF1058_RS04810 at 313.430 kb on + strand, within HMPREF1058_RS04810 at 313.586 kb on + strand, within HMPREF1058_RS04810 at 313.591 kb on + strand, within HMPREF1058_RS04810 at 313.768 kb on + strand, within HMPREF1058_RS04810 at 313.768 kb on + strand, within HMPREF1058_RS04810 at 314.153 kb on - strand at 314.213 kb on - strand at 314.320 kb on + strand at 314.377 kb on - strand at 314.417 kb on + strand at 314.418 kb on - strand at 314.593 kb on + strand, within HMPREF1058_RS04805 at 314.722 kb on - strand, within HMPREF1058_RS04805 at 314.754 kb on + strand, within HMPREF1058_RS04805 at 314.755 kb on - strand, within HMPREF1058_RS04805 at 314.755 kb on - strand, within HMPREF1058_RS04805 at 314.760 kb on - strand, within HMPREF1058_RS04805 at 314.804 kb on - strand, within HMPREF1058_RS04805 at 314.845 kb on + strand, within HMPREF1058_RS04805 at 315.010 kb on + strand at 315.013 kb on - strand at 315.020 kb on + strand at 315.020 kb on + strand at 315.034 kb on - strand at 315.089 kb on - strand, within HMPREF1058_RS04800
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C) remove 309,326 + HMPREF1058_RS04815 0.11 -2.3 309,326 + HMPREF1058_RS04815 0.11 +0.2 309,385 + HMPREF1058_RS04815 0.17 -2.3 309,385 + HMPREF1058_RS04815 0.17 -0.2 309,522 - HMPREF1058_RS04815 0.30 -0.6 309,524 + HMPREF1058_RS04815 0.31 -3.3 309,527 + HMPREF1058_RS04815 0.31 -1.4 309,528 - HMPREF1058_RS04815 0.31 +0.3 309,583 + HMPREF1058_RS04815 0.37 -1.0 309,584 - HMPREF1058_RS04815 0.37 +0.5 309,627 + HMPREF1058_RS04815 0.41 -1.2 309,627 + HMPREF1058_RS04815 0.41 -0.6 309,641 - HMPREF1058_RS04815 0.42 +0.0 309,658 + HMPREF1058_RS04815 0.44 -0.8 309,659 - HMPREF1058_RS04815 0.44 -2.8 309,659 - HMPREF1058_RS04815 0.44 -0.9 309,664 + HMPREF1058_RS04815 0.45 +0.7 309,867 + HMPREF1058_RS04815 0.65 -0.7 309,868 - HMPREF1058_RS04815 0.65 +1.8 309,868 - HMPREF1058_RS04815 0.65 -1.0 309,874 + HMPREF1058_RS04815 0.66 -3.7 309,874 + HMPREF1058_RS04815 0.66 -0.2 309,875 - HMPREF1058_RS04815 0.66 +0.5 309,875 - HMPREF1058_RS04815 0.66 -0.7 309,972 - HMPREF1058_RS04815 0.75 -1.3 309,973 + HMPREF1058_RS04815 0.76 +0.6 309,974 - HMPREF1058_RS04815 0.76 -0.7 309,974 - HMPREF1058_RS04815 0.76 -0.2 309,975 + HMPREF1058_RS04815 0.76 -0.4 309,975 + HMPREF1058_RS04815 0.76 +0.7 309,976 - HMPREF1058_RS04815 0.76 -0.6 309,977 + HMPREF1058_RS04815 0.76 +1.1 309,978 - HMPREF1058_RS04815 0.76 +0.6 309,987 - HMPREF1058_RS04815 0.77 -1.3 310,068 + HMPREF1058_RS04815 0.85 +2.7 310,068 + HMPREF1058_RS04815 0.85 +1.4 310,160 + +0.4 310,160 + -0.0 310,160 + -2.1 310,160 + +0.3 310,161 - +2.7 310,161 - +0.8 310,252 - -2.4 310,257 - -1.3 310,286 + +0.1 310,287 - +1.1 310,316 - -1.7 310,316 - -0.3 310,316 - +0.8 310,316 - +1.5 310,338 + +1.2 310,732 + HMPREF1058_RS04810 0.10 -0.6 310,780 + HMPREF1058_RS04810 0.12 -2.0 310,781 - HMPREF1058_RS04810 0.12 -0.3 310,784 + HMPREF1058_RS04810 0.12 -1.7 310,784 + HMPREF1058_RS04810 0.12 +2.7 310,785 - HMPREF1058_RS04810 0.12 -1.7 310,785 - HMPREF1058_RS04810 0.12 -0.9 310,785 - HMPREF1058_RS04810 0.12 -1.1 310,894 + HMPREF1058_RS04810 0.14 -0.5 310,894 + HMPREF1058_RS04810 0.14 +1.1 310,895 - HMPREF1058_RS04810 0.14 -1.6 311,016 - HMPREF1058_RS04810 0.17 -2.8 311,089 + HMPREF1058_RS04810 0.19 -0.8 311,090 - HMPREF1058_RS04810 0.19 -1.4 311,094 - HMPREF1058_RS04810 0.19 +0.8 311,217 + HMPREF1058_RS04810 0.22 +1.9 311,223 - HMPREF1058_RS04810 0.22 -1.1 311,440 + HMPREF1058_RS04810 0.28 -1.5 311,449 + HMPREF1058_RS04810 0.28 -2.3 311,496 - HMPREF1058_RS04810 0.29 -0.7 311,526 + HMPREF1058_RS04810 0.30 -0.6 311,528 + HMPREF1058_RS04810 0.30 -2.6 311,530 + HMPREF1058_RS04810 0.30 +0.3 311,597 + HMPREF1058_RS04810 0.32 -2.1 311,619 - HMPREF1058_RS04810 0.32 -1.0 311,619 - HMPREF1058_RS04810 0.32 +0.2 311,620 + HMPREF1058_RS04810 0.32 -0.7 311,621 - HMPREF1058_RS04810 0.32 -0.7 311,648 + HMPREF1058_RS04810 0.33 -2.1 311,651 - HMPREF1058_RS04810 0.33 -1.3 311,651 - HMPREF1058_RS04810 0.33 +1.1 311,762 + HMPREF1058_RS04810 0.36 -1.0 311,776 + HMPREF1058_RS04810 0.36 -0.3 311,787 + HMPREF1058_RS04810 0.36 -2.5 311,787 + HMPREF1058_RS04810 0.36 -2.3 311,787 + HMPREF1058_RS04810 0.36 +0.1 311,788 - HMPREF1058_RS04810 0.36 -2.3 311,788 - HMPREF1058_RS04810 0.36 +0.7 311,969 - HMPREF1058_RS04810 0.41 +0.1 312,011 - HMPREF1058_RS04810 0.42 +0.4 312,014 + HMPREF1058_RS04810 0.42 +1.2 312,138 + HMPREF1058_RS04810 0.45 +1.5 312,197 + HMPREF1058_RS04810 0.46 -0.5 312,200 - HMPREF1058_RS04810 0.46 -0.8 312,369 - HMPREF1058_RS04810 0.50 -0.8 312,378 + HMPREF1058_RS04810 0.50 +0.1 312,378 + HMPREF1058_RS04810 0.50 +1.8 312,379 - HMPREF1058_RS04810 0.51 -0.7 312,386 - HMPREF1058_RS04810 0.51 +2.5 312,386 - HMPREF1058_RS04810 0.51 +0.1 312,504 + HMPREF1058_RS04810 0.54 -0.5 312,505 - HMPREF1058_RS04810 0.54 +0.1 312,505 - HMPREF1058_RS04810 0.54 +0.1 312,534 + HMPREF1058_RS04810 0.54 -1.4 312,534 + HMPREF1058_RS04810 0.54 -1.0 312,534 + HMPREF1058_RS04810 0.54 +0.3 312,538 + HMPREF1058_RS04810 0.54 +0.1 312,539 - HMPREF1058_RS04810 0.54 +0.1 312,593 - HMPREF1058_RS04810 0.56 -1.0 312,638 + HMPREF1058_RS04810 0.57 +0.8 312,641 - HMPREF1058_RS04810 0.57 -1.3 312,698 + HMPREF1058_RS04810 0.58 -1.2 312,718 + HMPREF1058_RS04810 0.59 -1.5 312,718 + HMPREF1058_RS04810 0.59 -1.5 312,719 - HMPREF1058_RS04810 0.59 +0.3 312,719 - HMPREF1058_RS04810 0.59 +0.1 312,795 - HMPREF1058_RS04810 0.61 -1.2 312,921 - HMPREF1058_RS04810 0.64 -2.3 313,268 - HMPREF1058_RS04810 0.72 -0.5 313,306 - HMPREF1058_RS04810 0.73 -1.2 313,310 - HMPREF1058_RS04810 0.73 -0.2 313,310 - HMPREF1058_RS04810 0.73 -0.9 313,310 - HMPREF1058_RS04810 0.73 +0.1 313,417 + HMPREF1058_RS04810 0.76 +0.7 313,430 + HMPREF1058_RS04810 0.76 -1.5 313,586 + HMPREF1058_RS04810 0.80 -1.0 313,591 + HMPREF1058_RS04810 0.80 -0.3 313,768 + HMPREF1058_RS04810 0.84 +0.7 313,768 + HMPREF1058_RS04810 0.84 +3.7 314,153 - +0.4 314,213 - -3.3 314,320 + -0.7 314,377 - +1.7 314,417 + -2.3 314,418 - -1.4 314,593 + HMPREF1058_RS04805 0.38 +2.1 314,722 - HMPREF1058_RS04805 0.64 +0.3 314,754 + HMPREF1058_RS04805 0.71 -1.0 314,755 - HMPREF1058_RS04805 0.71 -0.4 314,755 - HMPREF1058_RS04805 0.71 -0.7 314,760 - HMPREF1058_RS04805 0.72 -0.8 314,804 - HMPREF1058_RS04805 0.81 -1.0 314,845 + HMPREF1058_RS04805 0.90 +0.3 315,010 + +0.5 315,013 - -1.6 315,020 + -2.3 315,020 + -2.3 315,034 - -0.1 315,089 - HMPREF1058_RS04800 0.13 +0.3
Or see this region's nucleotide sequence