Experiment: Dextran 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18920 and HMPREF1058_RS18915 are separated by 23 nucleotides HMPREF1058_RS18915 and HMPREF1058_RS0119260 overlap by 16 nucleotides HMPREF1058_RS0119260 and HMPREF1058_RS18910 are separated by 265 nucleotides
HMPREF1058_RS18920: HMPREF1058_RS18920 - hypothetical protein, at 47,765 to 48,406
_RS18920
HMPREF1058_RS18915: HMPREF1058_RS18915 - recombination protein NinG, at 48,430 to 48,909
_RS18915
HMPREF1058_RS0119260: HMPREF1058_RS0119260 - hypothetical protein, at 48,894 to 49,088
_RS0119260
HMPREF1058_RS18910: HMPREF1058_RS18910 - hypothetical protein, at 49,354 to 50,091
_RS18910
HMPREF1058_RS18905: HMPREF1058_RS18905 - hypothetical protein, at 50,088 to 50,519
_RS18905
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 47.908 kb on + strand, within HMPREF1058_RS18920 at 47.912 kb on + strand, within HMPREF1058_RS18920 at 47.912 kb on + strand, within HMPREF1058_RS18920 at 47.914 kb on + strand, within HMPREF1058_RS18920 at 47.914 kb on + strand, within HMPREF1058_RS18920 at 47.914 kb on + strand, within HMPREF1058_RS18920 at 47.926 kb on + strand, within HMPREF1058_RS18920 at 47.993 kb on + strand, within HMPREF1058_RS18920 at 48.088 kb on + strand, within HMPREF1058_RS18920 at 48.088 kb on + strand, within HMPREF1058_RS18920 at 48.325 kb on + strand, within HMPREF1058_RS18920 at 48.325 kb on + strand, within HMPREF1058_RS18920 at 48.325 kb on + strand, within HMPREF1058_RS18920 at 48.365 kb on + strand at 48.412 kb on + strand at 48.519 kb on + strand, within HMPREF1058_RS18915 at 48.675 kb on + strand, within HMPREF1058_RS18915 at 48.686 kb on + strand, within HMPREF1058_RS18915 at 49.044 kb on + strand, within HMPREF1058_RS0119260 at 49.099 kb on + strand at 49.140 kb on + strand at 49.196 kb on + strand at 49.196 kb on + strand at 49.217 kb on + strand at 49.246 kb on + strand at 49.246 kb on + strand at 49.369 kb on + strand at 49.598 kb on + strand, within HMPREF1058_RS18910 at 49.692 kb on + strand, within HMPREF1058_RS18910 at 49.838 kb on + strand, within HMPREF1058_RS18910 at 50.029 kb on + strand at 50.051 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C) remove 47,908 + HMPREF1058_RS18920 0.22 -1.1 47,912 + HMPREF1058_RS18920 0.23 +0.4 47,912 + HMPREF1058_RS18920 0.23 -0.1 47,914 + HMPREF1058_RS18920 0.23 -0.3 47,914 + HMPREF1058_RS18920 0.23 +0.6 47,914 + HMPREF1058_RS18920 0.23 -2.0 47,926 + HMPREF1058_RS18920 0.25 -2.6 47,993 + HMPREF1058_RS18920 0.36 -1.4 48,088 + HMPREF1058_RS18920 0.50 -1.3 48,088 + HMPREF1058_RS18920 0.50 -1.6 48,325 + HMPREF1058_RS18920 0.87 +0.2 48,325 + HMPREF1058_RS18920 0.87 -1.2 48,325 + HMPREF1058_RS18920 0.87 -3.3 48,365 + -1.3 48,412 + +0.7 48,519 + HMPREF1058_RS18915 0.19 +2.3 48,675 + HMPREF1058_RS18915 0.51 +1.6 48,686 + HMPREF1058_RS18915 0.53 -0.3 49,044 + HMPREF1058_RS0119260 0.77 +0.7 49,099 + +1.0 49,140 + +0.1 49,196 + -1.8 49,196 + -1.0 49,217 + +1.8 49,246 + -1.5 49,246 + -0.3 49,369 + -0.3 49,598 + HMPREF1058_RS18910 0.33 +1.3 49,692 + HMPREF1058_RS18910 0.46 +0.8 49,838 + HMPREF1058_RS18910 0.66 +0.5 50,029 + -1.2 50,051 + -0.8
Or see this region's nucleotide sequence