Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03557 and CCNA_03558 are separated by 207 nucleotides CCNA_03558 and CCNA_03559 overlap by 1 nucleotides CCNA_03559 and CCNA_03560 overlap by 1 nucleotides
CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810
_03557
CCNA_03558: CCNA_03558 - ATP synthase epsilon chain, at 3,714,018 to 3,714,278
_03558
CCNA_03559: CCNA_03559 - hypothetical protein, at 3,714,278 to 3,714,529
_03559
CCNA_03560: CCNA_03560 - ATP synthase beta chain, at 3,714,529 to 3,716,148
_03560
Position (kb)
3714
3715 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3713.045 kb on + strand at 3713.053 kb on - strand at 3713.072 kb on + strand at 3713.106 kb on - strand at 3713.111 kb on - strand at 3713.165 kb on - strand, within CCNA_03557 at 3713.244 kb on + strand, within CCNA_03557 at 3713.293 kb on + strand, within CCNA_03557 at 3713.316 kb on - strand, within CCNA_03557 at 3713.338 kb on - strand, within CCNA_03557 at 3713.362 kb on + strand, within CCNA_03557 at 3713.370 kb on - strand, within CCNA_03557 at 3713.389 kb on - strand, within CCNA_03557 at 3713.391 kb on + strand, within CCNA_03557 at 3713.391 kb on + strand, within CCNA_03557 at 3713.399 kb on - strand, within CCNA_03557 at 3713.461 kb on + strand, within CCNA_03557 at 3713.469 kb on - strand, within CCNA_03557 at 3713.514 kb on + strand, within CCNA_03557 at 3713.546 kb on + strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.578 kb on + strand, within CCNA_03557 at 3713.586 kb on - strand, within CCNA_03557 at 3713.602 kb on + strand, within CCNA_03557 at 3713.632 kb on + strand, within CCNA_03557 at 3713.670 kb on - strand, within CCNA_03557 at 3713.677 kb on + strand, within CCNA_03557 at 3713.719 kb on + strand, within CCNA_03557 at 3713.746 kb on - strand at 3713.782 kb on + strand at 3713.795 kb on - strand at 3713.800 kb on - strand at 3713.874 kb on - strand at 3713.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 3,713,045 + -1.2 3,713,053 - +3.0 3,713,072 + +0.2 3,713,106 - +2.4 3,713,111 - +0.3 3,713,165 - CCNA_03557 0.11 +2.4 3,713,244 + CCNA_03557 0.22 -1.7 3,713,293 + CCNA_03557 0.29 +1.5 3,713,316 - CCNA_03557 0.32 +2.6 3,713,338 - CCNA_03557 0.35 +2.5 3,713,362 + CCNA_03557 0.38 +0.8 3,713,370 - CCNA_03557 0.39 +2.6 3,713,389 - CCNA_03557 0.42 +2.7 3,713,391 + CCNA_03557 0.42 -0.0 3,713,391 + CCNA_03557 0.42 -0.1 3,713,399 - CCNA_03557 0.43 +1.4 3,713,461 + CCNA_03557 0.52 -0.1 3,713,469 - CCNA_03557 0.53 +3.0 3,713,514 + CCNA_03557 0.59 -0.3 3,713,546 + CCNA_03557 0.63 -0.7 3,713,547 - CCNA_03557 0.64 +2.5 3,713,554 - CCNA_03557 0.65 +2.0 3,713,554 - CCNA_03557 0.65 +1.9 3,713,554 - CCNA_03557 0.65 +1.9 3,713,554 - CCNA_03557 0.65 +2.2 3,713,578 + CCNA_03557 0.68 -2.8 3,713,586 - CCNA_03557 0.69 +1.1 3,713,602 + CCNA_03557 0.71 -0.2 3,713,632 + CCNA_03557 0.75 -0.3 3,713,670 - CCNA_03557 0.81 +2.3 3,713,677 + CCNA_03557 0.82 +0.3 3,713,719 + CCNA_03557 0.87 -0.7 3,713,746 - +2.0 3,713,782 + -0.1 3,713,795 - +1.6 3,713,800 - +1.8 3,713,874 - +2.1 3,713,991 - +2.6
Or see this region's nucleotide sequence