Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02435

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02432 and CCNA_02433 are separated by 120 nucleotidesCCNA_02433 and CCNA_02434 are separated by 187 nucleotidesCCNA_02434 and CCNA_02435 are separated by 2 nucleotidesCCNA_02435 and CCNA_02436 are separated by 97 nucleotidesCCNA_02436 and CCNA_R0059 are separated by 90 nucleotidesCCNA_R0059 and CCNA_02437 are separated by 114 nucleotides CCNA_02432: CCNA_02432 - nucleobase-cation-symport-1 (NCS1) transporter, at 2,573,283 to 2,574,749 _02432 CCNA_02433: CCNA_02433 - hypothetical protein, at 2,574,870 to 2,575,064 _02433 CCNA_02434: CCNA_02434 - hypothetical protein, at 2,575,252 to 2,575,692 _02434 CCNA_02435: CCNA_02435 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,575,695 to 2,576,984 _02435 CCNA_02436: CCNA_02436 - hypothetical protein, at 2,577,082 to 2,577,531 _02436 CCNA_R0059: CCNA_R0059 - tRNA-Thr, at 2,577,622 to 2,577,696 _R0059 CCNA_02437: CCNA_02437 - LysR-family transcriptional regulator, at 2,577,811 to 2,578,719 _02437 Position (kb) 2575 2576 2577Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2574.695 kb on + strandat 2574.696 kb on - strandat 2574.707 kb on + strandat 2574.868 kb on + strandat 2574.868 kb on + strandat 2574.868 kb on + strandat 2574.876 kb on - strandat 2574.881 kb on - strandat 2574.883 kb on + strandat 2574.883 kb on + strandat 2574.883 kb on + strandat 2574.883 kb on + strandat 2574.888 kb on + strandat 2574.891 kb on - strand, within CCNA_02433at 2574.891 kb on - strand, within CCNA_02433at 2574.891 kb on - strand, within CCNA_02433at 2574.891 kb on - strand, within CCNA_02433at 2574.896 kb on - strand, within CCNA_02433at 2574.907 kb on + strand, within CCNA_02433at 2574.922 kb on - strand, within CCNA_02433at 2574.943 kb on - strand, within CCNA_02433at 2574.945 kb on + strand, within CCNA_02433at 2574.945 kb on + strand, within CCNA_02433at 2574.953 kb on - strand, within CCNA_02433at 2574.964 kb on + strand, within CCNA_02433at 2574.991 kb on + strand, within CCNA_02433at 2574.999 kb on - strand, within CCNA_02433at 2575.072 kb on + strandat 2575.072 kb on + strandat 2575.073 kb on + strandat 2575.080 kb on - strandat 2575.080 kb on - strandat 2575.080 kb on - strandat 2575.080 kb on - strandat 2575.110 kb on + strandat 2575.118 kb on - strandat 2575.222 kb on + strandat 2575.230 kb on - strandat 2575.230 kb on - strandat 2575.230 kb on - strandat 2575.230 kb on - strandat 2575.249 kb on + strandat 2575.278 kb on - strandat 2575.369 kb on - strand, within CCNA_02434at 2575.398 kb on + strand, within CCNA_02434at 2575.418 kb on + strand, within CCNA_02434at 2575.486 kb on + strand, within CCNA_02434at 2575.494 kb on - strand, within CCNA_02434at 2575.494 kb on - strand, within CCNA_02434at 2575.494 kb on - strand, within CCNA_02434at 2575.505 kb on + strand, within CCNA_02434at 2575.623 kb on - strand, within CCNA_02434at 2575.623 kb on - strand, within CCNA_02434at 2575.623 kb on - strand, within CCNA_02434at 2575.647 kb on - strand, within CCNA_02434at 2575.649 kb on - strandat 2575.673 kb on + strandat 2575.680 kb on - strandat 2575.680 kb on - strandat 2575.690 kb on + strandat 2575.701 kb on - strandat 2575.717 kb on + strandat 2577.031 kb on - strandat 2577.031 kb on - strandat 2577.031 kb on - strandat 2577.031 kb on - strandat 2577.036 kb on - strandat 2577.036 kb on - strandat 2577.041 kb on + strandat 2577.080 kb on - strandat 2577.088 kb on - strandat 2577.099 kb on + strandat 2577.114 kb on + strandat 2577.119 kb on + strandat 2577.119 kb on + strandat 2577.119 kb on + strandat 2577.119 kb on + strandat 2577.119 kb on + strandat 2577.122 kb on - strandat 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.129 kb on + strand, within CCNA_02436at 2577.132 kb on - strand, within CCNA_02436at 2577.140 kb on + strand, within CCNA_02436at 2577.179 kb on + strand, within CCNA_02436at 2577.192 kb on + strand, within CCNA_02436at 2577.192 kb on + strand, within CCNA_02436at 2577.192 kb on - strand, within CCNA_02436at 2577.192 kb on - strand, within CCNA_02436at 2577.233 kb on + strand, within CCNA_02436at 2577.236 kb on - strand, within CCNA_02436at 2577.273 kb on + strand, within CCNA_02436at 2577.276 kb on + strand, within CCNA_02436at 2577.342 kb on - strand, within CCNA_02436at 2577.460 kb on - strand, within CCNA_02436at 2577.463 kb on + strand, within CCNA_02436at 2577.481 kb on - strand, within CCNA_02436at 2577.509 kb on + strandat 2577.541 kb on - strandat 2577.571 kb on + strandat 2577.720 kb on + strandat 2577.730 kb on + strandat 2577.839 kb on - strandat 2577.853 kb on - strandat 2577.876 kb on + strandat 2577.878 kb on - strandat 2577.884 kb on - strandat 2577.890 kb on - strandat 2577.946 kb on - strand, within CCNA_02437at 2577.984 kb on - strand, within CCNA_02437

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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2,574,695 + -0.1
2,574,696 - -2.0
2,574,707 + -1.2
2,574,868 + -0.7
2,574,868 + +0.1
2,574,868 + -2.0
2,574,876 - +1.4
2,574,881 - +0.5
2,574,883 + -0.9
2,574,883 + -0.7
2,574,883 + -0.9
2,574,883 + +0.1
2,574,888 + +0.1
2,574,891 - CCNA_02433 0.11 +1.5
2,574,891 - CCNA_02433 0.11 +1.2
2,574,891 - CCNA_02433 0.11 +0.8
2,574,891 - CCNA_02433 0.11 +1.8
2,574,896 - CCNA_02433 0.13 +2.4
2,574,907 + CCNA_02433 0.19 -1.8
2,574,922 - CCNA_02433 0.27 +1.4
2,574,943 - CCNA_02433 0.37 +0.8
2,574,945 + CCNA_02433 0.38 +0.6
2,574,945 + CCNA_02433 0.38 +2.3
2,574,953 - CCNA_02433 0.43 +0.7
2,574,964 + CCNA_02433 0.48 -1.6
2,574,991 + CCNA_02433 0.62 +0.4
2,574,999 - CCNA_02433 0.66 +0.8
2,575,072 + -2.3
2,575,072 + -0.4
2,575,073 + -0.9
2,575,080 - +1.0
2,575,080 - +1.4
2,575,080 - +1.5
2,575,080 - +0.0
2,575,110 + -0.6
2,575,118 - -0.1
2,575,222 + -0.6
2,575,230 - +0.2
2,575,230 - +0.4
2,575,230 - +2.0
2,575,230 - +1.0
2,575,249 + -2.0
2,575,278 - +2.6
2,575,369 - CCNA_02434 0.27 +1.5
2,575,398 + CCNA_02434 0.33 -1.0
2,575,418 + CCNA_02434 0.38 -0.9
2,575,486 + CCNA_02434 0.53 +0.1
2,575,494 - CCNA_02434 0.55 +1.4
2,575,494 - CCNA_02434 0.55 +2.2
2,575,494 - CCNA_02434 0.55 +1.6
2,575,505 + CCNA_02434 0.57 -1.3
2,575,623 - CCNA_02434 0.84 +1.4
2,575,623 - CCNA_02434 0.84 +1.1
2,575,623 - CCNA_02434 0.84 +1.5
2,575,647 - CCNA_02434 0.90 +0.9
2,575,649 - +1.3
2,575,673 + -1.3
2,575,680 - +1.5
2,575,680 - +1.8
2,575,690 + -1.4
2,575,701 - +2.3
2,575,717 + -0.7
2,577,031 - +2.6
2,577,031 - +1.6
2,577,031 - +1.8
2,577,031 - +1.6
2,577,036 - +2.7
2,577,036 - +0.7
2,577,041 + -1.4
2,577,080 - -0.3
2,577,088 - +1.7
2,577,099 + +1.0
2,577,114 + -0.7
2,577,119 + -1.6
2,577,119 + -0.0
2,577,119 + -1.7
2,577,119 + -1.3
2,577,119 + -0.9
2,577,122 - -0.3
2,577,127 - CCNA_02436 0.10 -0.7
2,577,127 - CCNA_02436 0.10 +1.0
2,577,127 - CCNA_02436 0.10 +0.5
2,577,127 - CCNA_02436 0.10 +2.2
2,577,127 - CCNA_02436 0.10 -0.6
2,577,127 - CCNA_02436 0.10 -0.3
2,577,127 - CCNA_02436 0.10 -0.0
2,577,129 + CCNA_02436 0.10 -1.5
2,577,132 - CCNA_02436 0.11 -0.2
2,577,140 + CCNA_02436 0.13 -0.2
2,577,179 + CCNA_02436 0.22 -2.7
2,577,192 + CCNA_02436 0.24 +0.8
2,577,192 + CCNA_02436 0.24 -0.0
2,577,192 - CCNA_02436 0.24 +2.5
2,577,192 - CCNA_02436 0.24 +1.5
2,577,233 + CCNA_02436 0.34 -1.2
2,577,236 - CCNA_02436 0.34 -0.5
2,577,273 + CCNA_02436 0.42 -0.9
2,577,276 + CCNA_02436 0.43 -1.5
2,577,342 - CCNA_02436 0.58 -0.3
2,577,460 - CCNA_02436 0.84 -1.6
2,577,463 + CCNA_02436 0.85 +2.0
2,577,481 - CCNA_02436 0.89 -1.2
2,577,509 + +1.5
2,577,541 - +1.0
2,577,571 + -1.7
2,577,720 + +2.8
2,577,730 + +2.9
2,577,839 - +1.0
2,577,853 - +1.2
2,577,876 + -1.5
2,577,878 - +1.0
2,577,884 - +1.1
2,577,890 - +2.4
2,577,946 - CCNA_02437 0.15 +1.4
2,577,984 - CCNA_02437 0.19 -0.4

Or see this region's nucleotide sequence